RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8034
         (73 letters)



>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
          (porphobilinogen synthase) {Pseudomonas aeruginosa
          [TaxId: 287]}
          Length = 329

 Score = 23.7 bits (51), Expect = 2.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query: 63 YPHLRPARLRR 73
          YP+ R  R RR
Sbjct: 4  YPYTRLRRNRR 14


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.418 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 279,339
Number of extensions: 10093
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)