BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8036
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E5A|A Chain A, Crystal Structure Of Bovine Lipoyltransferase In Complex
With Lipoyl-Amp
pdb|3A7U|A Chain A, Crystal Structure Of The Bovine Lipoyltransferase In Its
Unliganded Form
Length = 347
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 14/131 (10%)
Query: 10 KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
+GI SNATASTPA NL E P ++ + +I ++ EY + I
Sbjct: 172 QGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQI------------DNHI 219
Query: 70 QTINPTDD-WFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVK 128
INPTD+ FPG+ E Q+WEW YG TPKF++ SF + E + ++ + +++
Sbjct: 220 HLINPTDETVFPGINSKAIELQTWEWIYGKTPKFSVDTSFTVLHEQ-SHVEIKVFIDVKN 278
Query: 129 GLIESVCFKIP 139
G IE + P
Sbjct: 279 GRIEVCNIEAP 289
>pdb|3A7A|A Chain A, Crystal Structure Of E. Coli Lipoate-protein Ligase A In
Complex With Octyl-amp And Apoh-protein
pdb|3A7A|C Chain C, Crystal Structure Of E. Coli Lipoate-protein Ligase A In
Complex With Octyl-amp And Apoh-protein
pdb|3A7R|A Chain A, Crystal Structure Of E. Coli Lipoate-Protein Ligase A In
Complex With Lipoyl-Amp
Length = 337
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 20/124 (16%)
Query: 10 KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGG--EGQIAKQR 67
K + + S + NL E+ P ++ +++ +++ T+A G E +I
Sbjct: 170 KKLAAKGITSVRSRVTNLTELLPGITHEQVCEAI------TEAFFAHYGERVEAEII--- 220
Query: 68 GFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIV 127
+ N T D P A+ + SWEW +G P F+ + DE G + + ++
Sbjct: 221 ---SPNKTPD-LPNFAETFARQSSWEWNFGQAPAFS-----HLLDERFTWGGVELHFDVE 271
Query: 128 KGLI 131
KG I
Sbjct: 272 KGHI 275
>pdb|1X2G|A Chain A, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli
pdb|1X2G|B Chain B, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli
pdb|1X2G|C Chain C, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli
pdb|1X2H|A Chain A, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli Complexed With Lipoic Acid
pdb|1X2H|B Chain B, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli Complexed With Lipoic Acid
pdb|1X2H|C Chain C, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli Complexed With Lipoic Acid
Length = 337
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 20/124 (16%)
Query: 10 KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGG--EGQIAKQR 67
K + + S + NL E+ P ++ +++ +++ T+A G E +I
Sbjct: 170 KKLAAKGITSVRSRVTNLTELLPGITHEQVCEAI------TEAFFAHYGERVEAEII--- 220
Query: 68 GFQTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIV 127
+ N T D P A+ + SWEW +G P F+ + DE G + + ++
Sbjct: 221 ---SPNKTPD-LPNFAETFARQSSWEWNFGQAPAFS-----HLLDERFTWGGVELHFDVE 271
Query: 128 KGLI 131
KG I
Sbjct: 272 KGHI 275
>pdb|1AWC|A Chain A, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 110
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 147 HFLQDAELLCSVQGRKFTETALDDLKEALTSRGQTYLGTSLDRLV 191
+ D +++C VQG++F + DLK + Y L+RLV
Sbjct: 60 RYYYDGDMICKVQGKRFVYKFVCDLKTLI-----GYSAAELNRLV 99
>pdb|1VQZ|A Chain A, Crystal Structure Of A Putative Lipoate-Protein Ligase A
(Sp_1160) From Streptococcus Pneumoniae Tigr4 At 1.99 A
Resolution
Length = 341
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 87 SEYQSWEWRYGSTPKFTISQ 106
+++ +W+W YG +P+F + +
Sbjct: 243 TKFGTWDWNYGKSPEFNVRR 262
>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
Glucose
Length = 485
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 138 IPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTSRG 179
+P L+++ H L+D + S RK + +D+L + LT +G
Sbjct: 19 VPKELMDEIHQLEDMFTVDSETLRKVVKHFIDELNKGLTKKG 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,732,542
Number of Sequences: 62578
Number of extensions: 229581
Number of successful extensions: 491
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 10
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)