Query psy8036
Match_columns 194
No_of_seqs 141 out of 737
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 16:48:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vqz_A Lipoate-protein ligase, 100.0 1.1E-32 3.8E-37 237.8 11.7 161 2-192 171-337 (341)
2 3a7r_A Lipoate-protein ligase 100.0 1.4E-32 4.8E-37 236.8 11.0 162 2-192 162-330 (337)
3 2e5a_A Lipoyltransferase 1; li 100.0 1.8E-30 6.1E-35 224.5 7.6 167 1-191 163-336 (347)
4 2c8m_A Lipoate-protein ligase 99.5 1.1E-15 3.8E-20 127.0 1.0 85 2-101 174-259 (262)
5 3r07_C Putative lipoate-protei 99.4 2.9E-12 9.9E-17 90.3 9.2 74 104-192 8-86 (91)
6 2p5i_A BH3822 protein; PFAM030 97.7 1E-05 3.4E-10 67.7 1.2 70 3-89 200-270 (288)
7 2p0l_A Lipoate-protein ligase 96.7 0.00085 2.9E-08 55.9 3.1 45 4-50 200-245 (288)
8 1w66_A Lipoyltransferase; lipo 93.3 0.055 1.9E-06 43.6 3.3 45 1-51 169-213 (232)
9 2qq4_A Iron-sulfur cluster bio 90.2 0.95 3.2E-05 33.3 6.8 68 86-164 13-84 (138)
10 1su0_B NIFU like protein ISCU; 81.8 2.8 9.7E-05 31.5 5.7 68 85-164 14-85 (159)
11 2z7e_A ISCU protein, NIFU-like 81.5 3.5 0.00012 31.0 6.1 50 85-138 9-60 (157)
12 4eb5_C NIFU protein (NIFU-1); 81.1 3.4 0.00012 31.0 5.8 41 95-138 15-55 (153)
13 1xjs_A NIFU-like protein; SR17 79.2 2.6 9E-05 31.2 4.6 68 85-164 15-86 (147)
14 3q6b_A Outer membrane protein 70.7 21 0.00072 26.8 8.0 86 81-183 73-164 (189)
15 1ffv_C CUTM, flavoprotein of c 65.3 20 0.0007 29.1 7.3 54 120-176 198-251 (287)
16 3lvl_A NIFU-like protein; prot 65.0 15 0.00053 26.3 5.8 40 118-164 40-84 (129)
17 1n62_C Carbon monoxide dehydro 64.6 21 0.00072 29.0 7.3 54 120-176 198-251 (288)
18 1t3q_C Quinoline 2-oxidoreduct 63.4 23 0.0008 28.8 7.3 56 119-177 194-249 (288)
19 3nvz_B Xanthine dehydrogenase/ 61.7 22 0.00074 29.2 6.9 55 120-177 213-269 (305)
20 3o6u_A Uncharacterized protein 60.4 7 0.00024 28.2 3.2 21 118-138 19-39 (128)
21 1b4r_A Protein (PKD1_human); P 51.6 11 0.00039 24.9 2.8 37 90-130 27-67 (80)
22 1u07_A TONB protein; beta-hair 51.4 20 0.00068 23.5 4.1 21 118-138 25-46 (90)
23 3hrd_C Nicotinate dehydrogenas 50.7 33 0.0011 28.0 6.1 53 120-175 201-254 (296)
24 2w3s_A Xanthine dehydrogenase; 49.1 34 0.0012 29.9 6.3 54 120-176 366-419 (462)
25 2k9k_A TONB2; metal transport; 47.3 23 0.00079 23.9 4.1 21 118-138 40-61 (106)
26 3dm8_A Uncharacterized protein 44.4 19 0.00066 25.4 3.4 33 122-165 107-139 (143)
27 2qhs_A Lipoyltransferase; glob 43.0 25 0.00086 27.7 4.1 20 33-52 207-226 (237)
28 3mc9_A ALR2269 protein; polype 42.3 58 0.002 26.6 6.5 56 118-176 126-187 (316)
29 2kzx_A Uncharacterized protein 41.2 30 0.001 24.7 4.0 20 119-138 19-38 (131)
30 1rm6_B 4-hydroxybenzoyl-COA re 39.6 41 0.0014 28.0 5.1 53 119-176 237-289 (324)
31 2x8x_X TLR1789 protein, OMP85; 39.4 77 0.0026 23.7 6.4 55 118-176 65-120 (235)
32 1cc1_L Hydrogenase (large subu 38.7 30 0.001 30.4 4.3 59 118-176 426-490 (498)
33 2grx_C Protein TONB; beta barr 38.4 35 0.0012 27.1 4.3 43 118-165 164-207 (229)
34 2wpn_B Periplasmic [nifese] hy 37.2 29 0.00098 30.5 3.9 59 118-176 423-487 (495)
35 2yh9_A Small protein A, BAME p 37.2 31 0.001 22.8 3.3 38 90-138 38-75 (88)
36 2y72_A Collagenase, collagenas 36.2 31 0.0011 22.4 3.1 36 90-129 34-70 (85)
37 2qdf_A OMP85, outer membrane p 35.9 1.1E+02 0.0038 24.5 7.2 51 118-176 236-293 (335)
38 1wui_L Periplasmic [NIFE] hydr 34.2 38 0.0013 30.2 4.3 59 118-176 462-526 (534)
39 3zyv_A AOH1; oxidoreductase, m 34.1 14 0.00049 36.7 1.6 55 119-176 444-498 (1335)
40 3uqy_L Hydrogenase-1 large cha 33.1 97 0.0033 28.0 6.8 47 118-164 510-558 (582)
41 1yqw_Q Periplasmic [NIFE] hydr 32.6 41 0.0014 30.0 4.3 59 118-176 477-541 (549)
42 2qdz_A TPSB transporter FHAC; 31.8 79 0.0027 27.4 5.9 52 122-177 127-181 (554)
43 2qdf_A OMP85, outer membrane p 31.5 72 0.0025 25.6 5.3 49 121-176 67-122 (335)
44 1yq9_H Periplasmic [NIFE] hydr 31.2 55 0.0019 29.2 4.8 59 118-176 464-528 (536)
45 2kzw_A Uncharacterized protein 28.5 27 0.00091 25.6 1.9 35 91-129 90-125 (145)
46 1cc1_L Hydrogenase (large subu 27.2 65 0.0022 28.2 4.5 21 118-138 24-44 (498)
47 1wui_L Periplasmic [NIFE] hydr 26.8 62 0.0021 28.8 4.4 21 118-138 17-37 (534)
48 1yqw_Q Periplasmic [NIFE] hydr 26.2 64 0.0022 28.8 4.4 21 118-138 26-46 (549)
49 2wpn_B Periplasmic [nifese] hy 26.0 70 0.0024 28.0 4.5 21 118-138 29-49 (495)
50 3unc_A Xanthine dehydrogenase/ 25.3 1.4E+02 0.0048 29.8 6.9 53 122-177 438-492 (1332)
51 1yq9_H Periplasmic [NIFE] hydr 24.9 71 0.0024 28.4 4.4 21 118-138 19-39 (536)
52 1e3d_B [NIFE] hydrogenase larg 24.8 74 0.0025 28.4 4.5 59 118-176 470-534 (542)
53 2km7_A Small protein A; BAME, 24.8 54 0.0019 22.3 2.9 36 92-138 54-89 (102)
54 3myr_B Nickel-dependent hydrog 24.0 85 0.0029 28.2 4.7 58 118-175 488-552 (561)
55 1e3d_B [NIFE] hydrogenase larg 22.7 83 0.0028 28.1 4.4 21 118-138 25-45 (542)
56 4g4g_A 4-O-methyl-glucuronoyl 21.2 2.1E+02 0.007 24.9 6.4 52 79-141 81-134 (433)
57 3ayx_A Membrane-bound hydrogen 20.9 81 0.0028 28.5 3.9 59 118-176 524-588 (596)
58 3grd_A Uncharacterized NTF2-su 20.7 1E+02 0.0035 20.7 3.7 15 124-138 109-123 (134)
No 1
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=99.98 E-value=1.1e-32 Score=237.80 Aligned_cols=161 Identities=14% Similarity=0.307 Sum_probs=142.2
Q ss_pred ccccCCCccccccccccccccccccccccCC-CCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCchh
Q psy8036 2 RIATGASMKGIISNATASTPAPTLNLQEVCP-EVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFP 80 (194)
Q Consensus 2 ~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~-~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~ 80 (194)
.++|++++.|+.+||++|||+|||||+++++ .+++++|+++|.++|.+.++.. + .+.+ +++++ +
T Consensus 171 ~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~~~~~~~--------~----~~~l--t~~e~-~ 235 (341)
T 1vqz_A 171 ANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPEM--------T----EYVF--SEEEL-A 235 (341)
T ss_dssp HHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCTTC--------E----ECCC--CHHHH-H
T ss_pred HHHhCCCccchhhcccccchhhheeHHHhcCCCCCHHHHHHHHHHHHHHhcCCC--------C----CCCC--CHHHH-H
Confidence 4689999999999999999999999999987 5999999999999999873211 0 1223 55666 8
Q ss_pred hHHHHHh-hhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc---HHHHHh
Q psy8036 81 GLAKIQS-EYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ---DAELLC 156 (194)
Q Consensus 81 ~i~~~~~-k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~---~~~l~~ 156 (194)
.++++++ +|+||||+||++|+|++....||+| |.++++++|++|+|++|+|+| ||+. +.+|++
T Consensus 236 ~i~~l~~~ky~s~eW~~g~~P~f~~~~~~r~~~-----G~v~~~~~v~~g~I~~~~i~g--------Df~~~~~~~~l~~ 302 (341)
T 1vqz_A 236 EINRIKDTKFGTWDWNYGKSPEFNVRRGIKFTS-----GKVEVFANVTESKIQDIKIYG--------DFFGIEDVAAVED 302 (341)
T ss_dssp HHHHHHHHTTTCHHHHTCCCCCCSEEEEEEETT-----EEEEEEEEEETTEEEEEEEEE--------SCCCSSCTHHHHH
T ss_pred HHHHHHHHhcCCcccccCCCCCceEEeeecccC-----CcEEEEEEEeCCEEEEEEEEC--------CcCCcchHHHHHH
Confidence 8999986 9999999999999999999999999 999999999999999999999 8887 478999
Q ss_pred hcCCCCCCHHHHHHHHHHHhhcCcccCC-Cchhhhhh
Q psy8036 157 SVQGRKFTETALDDLKEALTSRGQTYLG-TSLDRLVT 192 (194)
Q Consensus 157 ~L~G~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~ 192 (194)
.|+|++|++++|.++|+.++. ..|++ .++++|++
T Consensus 303 ~L~G~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~ 337 (341)
T 1vqz_A 303 VLRGVKYEREDVLKALKTIDI--TRYFAGISREEIAE 337 (341)
T ss_dssp HHTTCBSSHHHHHHHHTTSCG--GGTSTTCCHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHhcc--cccccCCCHHHHHH
Confidence 999999999999999999988 78885 69999875
No 2
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=99.98 E-value=1.4e-32 Score=236.81 Aligned_cols=162 Identities=18% Similarity=0.270 Sum_probs=140.7
Q ss_pred ccccCCCccccccccccccccccccccccCCCCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCchhh
Q psy8036 2 RIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFPG 81 (194)
Q Consensus 2 ~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~ 81 (194)
.++|++++.|+.+|||+||++|||||+++++.+++++|+++|.++|.+.++... ..+.+ +++++ +.
T Consensus 162 ~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~~~~~~~v~~~l~~~f~~~~~~~~-----------~~~~l--~~~e~-~~ 227 (337)
T 3a7r_A 162 ANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERV-----------EAEII--SPNKT-PD 227 (337)
T ss_dssp HHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHHHHHHTCCC-----------CCEEE--CTTSC-CC
T ss_pred HHHhcCChhhhhhcCCCchhhheeEHHHhCCCCCHHHHHHHHHHHHHHHcCCCC-----------ceecC--CHHHH-HH
Confidence 468999999999999999999999999999889999999999999998743211 22345 55565 55
Q ss_pred HHHHHhhh---CCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc---HHHHH
Q psy8036 82 LAKIQSEY---QSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ---DAELL 155 (194)
Q Consensus 82 i~~~~~k~---~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~---~~~l~ 155 (194)
+.++.++| +||||+||+||+|++....+|+| |.++++++|++|+|++|+|+| ||+. +.+|+
T Consensus 228 ~~~l~~ky~~l~s~eW~~g~~p~f~~~~~~r~~~-----g~v~~~~~v~~g~I~~~~i~g--------D~~~~~~~~~l~ 294 (337)
T 3a7r_A 228 LPNFAETFARQSSWEWNFGQAPAFSHLLDERFTW-----GGVELHFDVEKGHITRAQVFT--------DSLNPAPLEALA 294 (337)
T ss_dssp CTTHHHHHHHHHSHHHHTTTSCCEEEEEEEEETT-----EEEEEEEEEETTEEEEEEEEE--------CCSCCHHHHHHH
T ss_pred HHHHHHHHHHhcCcccccCCCCCceEEEeeccCC-----CcEEEEEEEcCCEEEEEEEEC--------CCCCchHHHHHH
Confidence 66666667 99999999999999999999999 999999999999999999999 8887 47899
Q ss_pred hhcCCCCCCHHHHHHHHHHHhhcCcccCC-Cchhhhhh
Q psy8036 156 CSVQGRKFTETALDDLKEALTSRGQTYLG-TSLDRLVT 192 (194)
Q Consensus 156 ~~L~G~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~ 192 (194)
+.|+|++|++++|.+++..++. ..|++ .+.++|++
T Consensus 295 ~~L~G~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~ 330 (337)
T 3a7r_A 295 GRLQGCLYRADMLQQECEALLV--DFPEQEKELRELSA 330 (337)
T ss_dssp HHTTTCBSSHHHHHHHHHHTTT--TCGGGHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHhhcc--ccccccCCHHHHHH
Confidence 9999999999999999999987 78886 58888764
No 3
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=99.96 E-value=1.8e-30 Score=224.48 Aligned_cols=167 Identities=29% Similarity=0.441 Sum_probs=127.8
Q ss_pred CccccCCCccccccccccccccccccccccCCCCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCC-Cch
Q psy8036 1 MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTD-DWF 79 (194)
Q Consensus 1 m~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-e~~ 79 (194)
|.++|++++.|+.+|||+||++||+||+++.+.+++++|+++|.++|.+.++...+ .. ....+++ ++
T Consensus 163 l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~~~~~~~~~~v~~~l~~~f~~~~~~~~~----------~~-~~~~~~~~~~- 230 (347)
T 2e5a_A 163 LSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQIDNH----------IH-LINPTDETVF- 230 (347)
T ss_dssp HHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHTCCCC----------CE-EECTTCTTTS-
T ss_pred HHHHHccCchhhhhhcccchHHhhccHHHhCCCCCHHHHHHHHHHHHHHHhCCCCc----------ce-ecCCCchHHH-
Confidence 35789999999999999999999999999988899999999999999987532111 00 1112444 56
Q ss_pred hhHHHHHhhhCCcceecCCCCCceeeeeecCCCCCCCCc---eEEEEEEEeCCeEEEEEEEcCCCCCCcccccc---HHH
Q psy8036 80 PGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPG---QLVISLEIVKGLIESVCFKIPPALVNDEHFLQ---DAE 153 (194)
Q Consensus 80 ~~i~~~~~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G---~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~---~~~ 153 (194)
+.|.+++++|+||||+||++|+|++....+|++. | .++++++|++|+|++|+|+++ + ||+. +.+
T Consensus 231 ~~i~~l~~~~~s~eW~~g~~p~f~~~~~~~~~~~----g~~~~v~~~~~v~~g~I~~~~i~~~-~-----d~~~~~~~~~ 300 (347)
T 2e5a_A 231 PGINSKAIELQTWEWIYGKTPKFSVDTSFTVLHE----QSHVEIKVFIDVKNGRIEVCNIEAP-D-----HWLPLEICDQ 300 (347)
T ss_dssp TTHHHHHHHHHSHHHHTTTCCCEEEEEEEEEEC------CEEEEEEEEEEETTEEEEEEEECC-T-----TTSCHHHHHH
T ss_pred HHHHHHHHHhCCccccCCCCCCceEEEeeeecCC----CCceEEEEEEEEcCCEEEEEEEEec-C-----CcCChhHHHH
Confidence 8999999999999999999999999999998852 5 899999999999999999942 1 8776 478
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHhhcCcccCCCchhhhh
Q psy8036 154 LLCSVQGRKFTETALDDLKEALTSRGQTYLGTSLDRLV 191 (194)
Q Consensus 154 l~~~L~G~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 191 (194)
|++.|+|++|+++++.++++.+.. ..+.....++|.
T Consensus 301 l~~~L~G~~~~~~~~~~~~~~~~~--~~~~~~~~~el~ 336 (347)
T 2e5a_A 301 LNSSLIGSKFSPIETTVLTSILHR--TYPGDDELHSKW 336 (347)
T ss_dssp HHHHHTTSBSCSSTTTC--------------CHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhh--hCchhhhHHHHH
Confidence 999999999999999999998876 333355556654
No 4
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=99.53 E-value=1.1e-15 Score=126.98 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=53.6
Q ss_pred ccccCCCccccccccccccccccccccccCCCCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCchhh
Q psy8036 2 RIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFPG 81 (194)
Q Consensus 2 ~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~ 81 (194)
.++|++++.++.+||++|+++|||||++++ .+++++|+++|.++|.+.++... ..+.+ +++++ +.
T Consensus 174 ~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~-~~~~~~v~~~l~~~~~~~~~~~~-----------~~~~l--t~~e~-~~ 238 (262)
T 2c8m_A 174 SAVLKVPDEKFRDKIAKSTRERVANVTDFV-DVSIDEVRNALIRGFSETLHIDF-----------REDTI--TEKEE-SL 238 (262)
T ss_dssp HHHTC---------------CCBCCGGGTS-CCCHHHHHHHHHHHHHHHHTCEE-----------EECCC--CHHHH-HH
T ss_pred HHHhCCChhhhhhhccccHHhhhccHHHhc-CCCHHHHHHHHHHHHHHHhCCCc-----------eecCC--CHHHH-HH
Confidence 467899999999999999999999999988 79999999999999998743211 11223 45566 88
Q ss_pred HHHHHh-hhCCcceecCCCCC
Q psy8036 82 LAKIQS-EYQSWEWRYGSTPK 101 (194)
Q Consensus 82 i~~~~~-k~~sweW~yGktP~ 101 (194)
++++++ ||+||||+||++|+
T Consensus 239 ~~~l~~~ky~~~~W~~g~~~~ 259 (262)
T 2c8m_A 239 ARELFDKKYSTEEWNMGLLRK 259 (262)
T ss_dssp HHHHHHHTTTSHHHHHCC---
T ss_pred HHHHHHhhcCCccccCCCCCc
Confidence 999986 99999999999986
No 5
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=99.37 E-value=2.9e-12 Score=90.28 Aligned_cols=74 Identities=14% Similarity=0.282 Sum_probs=63.4
Q ss_pred eeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc-----HHHHHhhcCCCCCCHHHHHHHHHHHhhc
Q psy8036 104 ISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ-----DAELLCSVQGRKFTETALDDLKEALTSR 178 (194)
Q Consensus 104 ~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~-----~~~l~~~L~G~~~~~~~i~~~l~~~~~~ 178 (194)
++...|||| |.++++++|++|+|++|+|+| |||. +.+|+++|+|+||+ +|.++|+++...
T Consensus 8 ~~~~~kf~~-----G~v~v~l~v~~G~I~~vki~G--------DFf~~p~~~i~~le~~L~G~~~~--~i~~~l~~~~~~ 72 (91)
T 3r07_C 8 YSKNWKAKK-----GLIRVTLDLDGNRIKDIHISG--------DFFMFPEDSINRLEDMLRGSSIE--KINDIIRDFYNQ 72 (91)
T ss_dssp EEEEEECSS-----CEEEEEEEEETTEEEEEEEEE--------EBCCBSTTHHHHHHHHHTTSBTT--SHHHHHHHHHTT
T ss_pred EEEEEEcCC-----cEEEEEEEEcCCEEEEEEEEc--------ccCCCcchhHHHHHHHHCCCCHH--HHHHHHHhhhcc
Confidence 567889999 999999999999999999999 9985 47999999999999 899999887543
Q ss_pred CcccCCCchhhhhh
Q psy8036 179 GQTYLGTSLDRLVT 192 (194)
Q Consensus 179 ~~~~~~~~~~~~~~ 192 (194)
+..++|.+++++++
T Consensus 73 ~~~~~g~~~edi~~ 86 (91)
T 3r07_C 73 GVITPGVEPEDFIQ 86 (91)
T ss_dssp TCBCTTCCTTHHHH
T ss_pred CceEcCCCHHHHHH
Confidence 34444889999875
No 6
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=97.66 E-value=1e-05 Score=67.71 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=52.6
Q ss_pred cccCCCccccccccccccccccccccccCC-CCCHHHHHHHHHHHHHhhccccccCCCccccccccceeecCCCCCchhh
Q psy8036 3 IATGASMKGIISNATASTPAPTLNLQEVCP-EVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGFQTINPTDDWFPG 81 (194)
Q Consensus 3 ~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~-~i~~e~f~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~ 81 (194)
++|+|++.|+.+||+ ++++||||+++++ .+++++|+++|.++|.+.+. .. ..+.+ +++|+ +.
T Consensus 200 ~~l~~~~~ki~~~gi--~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~~~~~-~~-----------~~~~l--t~~e~-~~ 262 (288)
T 2p5i_A 200 KAVAGQPTKFVYPRI--KPETMASLSELLGQPHNVSDVLLKALMTLQQHGA-SL-----------LTESL--SADEW-LL 262 (288)
T ss_dssp HHHTTSCCSSCCCCC--CGGGBCCHHHHHTSCCCHHHHHHHHHHHHHHTTC-CC-----------EECCC--CHHHH-HH
T ss_pred HhhcCcccccccccc--chhhceeHHHHcCCCCCHHHHHHHHHHHHHHhCC-Cc-----------eecCC--CHHHH-HH
Confidence 357899999999999 6999999999876 49999999999999987421 10 11223 55666 77
Q ss_pred HHHHHhhh
Q psy8036 82 LAKIQSEY 89 (194)
Q Consensus 82 i~~~~~k~ 89 (194)
++++.++|
T Consensus 263 ~~~~~~~~ 270 (288)
T 2p5i_A 263 YEQHFARI 270 (288)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766554
No 7
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=96.69 E-value=0.00085 Score=55.93 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=40.6
Q ss_pred ccCCCccccccccccccccccccccccCCC-CCHHHHHHHHHHHHHhh
Q psy8036 4 ATGASMKGIISNATASTPAPTLNLQEVCPE-VSMDRLIKSLGYEYLRT 50 (194)
Q Consensus 4 ~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~-i~~e~f~~~l~~~f~~~ 50 (194)
+|+|++.|+.++|+ ++++||||+++++. +++++|+++|.++|.+.
T Consensus 200 ~l~~~~~k~~~~gi--~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~~~ 245 (288)
T 2p0l_A 200 GLGDTGSPIAYPNV--DPEIMANLSDLLDCPMTVEDVIDRMLISLKQV 245 (288)
T ss_dssp HHTTTCCSSCCCCC--CTTSBCCHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hcCCcccccccccc--chhheeeHHHHcCCCCCHHHHHHHHHHHHHHh
Confidence 46888899999999 49999999998874 99999999999999976
No 8
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=93.28 E-value=0.055 Score=43.63 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=36.6
Q ss_pred CccccCCCccccccccccccccccccccccCCCCCHHHHHHHHHHHHHhhc
Q psy8036 1 MRIATGASMKGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTK 51 (194)
Q Consensus 1 m~~~L~~~~~Kl~sKgV~SVrsrVtNL~~~~~~i~~e~f~~~l~~~f~~~~ 51 (194)
|..++++.+.||.+|||.|++++ +...+++++++++|.++|.+.+
T Consensus 169 L~~f~~I~pcgi~~k~vtSl~~~------lg~~~~~~ev~~~l~~~f~~~~ 213 (232)
T 1w66_A 169 LAAFTAIVPCGISDAAVTSLSAE------LGRTVTVDEVRATVAAAVCAAL 213 (232)
T ss_dssp CGGGGGSCGGGCSSSEECCHHHH------HTSCCCHHHHHHHHHHHHHHHH
T ss_pred hHHhcCccccccCCCceeeeHHH------hCCCCCHHHHHHHHHHHHHHHh
Confidence 34567777889999999999854 2346899999999999999874
No 9
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=90.17 E-value=0.95 Score=33.33 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=45.3
Q ss_pred HhhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc----HHHHHhhcCCC
Q psy8036 86 QSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ----DAELLCSVQGR 161 (194)
Q Consensus 86 ~~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~----~~~l~~~L~G~ 161 (194)
.+.|+.+. ++|.-+.++......-|.. | ..+++.+.|++|+|++++|.+- -+.. ..-+.+.++|.
T Consensus 13 ldh~~nP~-n~G~l~~~~~~~~~~np~C-G--D~i~l~l~v~~~~I~d~~f~~~-------GCais~ASaS~~te~i~Gk 81 (138)
T 2qq4_A 13 LDHYQSPR-NFGVLPQATKQAGGMNPSC-G--DQVEVMVLLEGDTIADIRFQGQ-------GCAISTASASLMTEAVKGK 81 (138)
T ss_dssp HHHHHSCT-TBSCCTTCSEEEEEECTTT-C--CEEEEEEEEETTEEEEEEEEEE-------CCHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCC-CCCCCCCCCeEEeeCCCCC-C--CEEEEEEEECCCEEEEEEEEec-------CCHHHHHHHHHHHHHHcCC
Confidence 34555555 6788777766555444432 2 4899999999999999999971 2221 12345788898
Q ss_pred CCC
Q psy8036 162 KFT 164 (194)
Q Consensus 162 ~~~ 164 (194)
..+
T Consensus 82 t~~ 84 (138)
T 2qq4_A 82 KVA 84 (138)
T ss_dssp BHH
T ss_pred cHH
Confidence 765
No 10
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=81.82 E-value=2.8 Score=31.51 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=42.7
Q ss_pred HHhhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc----HHHHHhhcCC
Q psy8036 85 IQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ----DAELLCSVQG 160 (194)
Q Consensus 85 ~~~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~----~~~l~~~L~G 160 (194)
+.+.|+.+. ++|.- .++......-|.. | ..+++.+.|++|+|++++|.+- -+.. ..-+.+.++|
T Consensus 14 Ildh~~nP~-n~G~l-~~~~~~~~~np~C-G--D~i~l~lkv~~g~I~d~~F~~~-------GCais~ASaS~mte~v~G 81 (159)
T 1su0_B 14 VADHSKRPH-HHGQL-DGVEAVQLNNPTC-G--DVISLTVKFDEDKIEDIAFAGN-------GCTISTASSSMMTDAVIG 81 (159)
T ss_dssp HHHHHHSCS-SBSCC-TTCCCEEEECSSS-C--CEEEEEEEESSSSEEEEEEEEE-------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCC-CCCCC-CCCeEEeecCCCC-C--CEEEEEEEECCCEEEEEEEEec-------CCHHHHHHHHHHHHHHcC
Confidence 345555555 56775 5554444333322 2 4899999999999999999971 2221 1234477888
Q ss_pred CCCC
Q psy8036 161 RKFT 164 (194)
Q Consensus 161 ~~~~ 164 (194)
...+
T Consensus 82 kt~~ 85 (159)
T 1su0_B 82 KSKE 85 (159)
T ss_dssp CCHH
T ss_pred CcHH
Confidence 8765
No 11
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=81.48 E-value=3.5 Score=30.97 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=35.4
Q ss_pred HHhhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEE--eCCeEEEEEEEc
Q psy8036 85 IQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEI--VKGLIESVCFKI 138 (194)
Q Consensus 85 ~~~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v--~~G~I~~i~i~~ 138 (194)
+.+.|..+. ++|.-+.++......-|.. | ..+++.+.| ++|+|++++|.+
T Consensus 9 Ildh~~nPr-n~G~l~~~d~~~~~~np~C-G--D~i~l~lkvd~~~g~I~d~~F~~ 60 (157)
T 2z7e_A 9 VLDHFLNPR-NVGVLEDANGVGQCGNPAC-G--AAMLFTIKVNPENDVIEDVRFKT 60 (157)
T ss_dssp HHHHHHSCS-SBSCCTTCSEEEEEEETTT-T--EEEEEEEEECTTTCBEEEEEEEE
T ss_pred HHHHHhCCC-CCCCCCCCCeEEEeCCCCC-C--CEEEEEEEEecCCCeEEEEEEEe
Confidence 345566555 7888777765555443422 1 489999999 789999999997
No 12
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=81.12 E-value=3.4 Score=30.97 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=30.0
Q ss_pred ecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEc
Q psy8036 95 RYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKI 138 (194)
Q Consensus 95 ~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~ 138 (194)
++|.-+.++......-|.. | ..+++.+.|++|+|++++|.+
T Consensus 15 n~G~l~~~d~~~~~~nP~C-G--D~i~l~lkv~d~~I~D~~F~g 55 (153)
T 4eb5_C 15 NVGKIEDADGVGTVGNPVC-G--DLMTIYIKVKDNRIEDIKFQT 55 (153)
T ss_dssp SBSCCSSCSEEEEEECTTT-C--CEEEEEEEESSSBEEEEEEEE
T ss_pred CCCCCCCCCeEEEeCCCCC-C--CEEEEEEEecCCeEEEEEEEE
Confidence 4676666665555554521 1 489999999999999999997
No 13
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=79.23 E-value=2.6 Score=31.24 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=43.5
Q ss_pred HHhhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEcCCCCCCcccccc----HHHHHhhcCC
Q psy8036 85 IQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKIPPALVNDEHFLQ----DAELLCSVQG 160 (194)
Q Consensus 85 ~~~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~----~~~l~~~L~G 160 (194)
+.+.|+.+. ++|.- .++......-|.. | ..+++.+.|++|+|++++|.+- -+.. ..-+.+.++|
T Consensus 15 Ildh~~nP~-n~G~l-~~~~~~~~~np~C-G--D~i~l~lkv~~~~I~d~~f~~~-------GCais~ASaS~mte~v~G 82 (147)
T 1xjs_A 15 IMDHYKNPR-NKGVL-NDSIVVDMNNPTC-G--DRIRLTMKLDGDIVEDAKFEGE-------GCSISMASASMMTQAIKG 82 (147)
T ss_dssp HHHHHHSCC-CCCCC-CSSEEEEEEETTT-T--EEEEEEEECCSSBCCEEEEEEE-------SSHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCC-CCCCC-CCCeEEeecCCCC-C--CEEEEEEEECCCeEEEEEEEec-------CCHHHHHHHHHHHHHHcC
Confidence 345566555 67776 5554444333322 2 4899999999999999999971 2221 1234578889
Q ss_pred CCCC
Q psy8036 161 RKFT 164 (194)
Q Consensus 161 ~~~~ 164 (194)
...+
T Consensus 83 kt~~ 86 (147)
T 1xjs_A 83 KDIE 86 (147)
T ss_dssp SBHH
T ss_pred CcHH
Confidence 8775
No 14
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=70.74 E-value=21 Score=26.85 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=53.3
Q ss_pred hHHHHHhhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCC---eEEEEEEEcCCCCCCccccccHHHHHhh
Q psy8036 81 GLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKG---LIESVCFKIPPALVNDEHFLQDAELLCS 157 (194)
Q Consensus 81 ~i~~~~~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G---~I~~i~i~~~~~~~~~~df~~~~~l~~~ 157 (194)
...++.+.|...=+.+.+- .......... |.+.+.+.|..| +|.+|.|.|. .-..+..+...
T Consensus 73 ~~~~I~~~y~~~GY~~a~v---~~~~~~d~~~-----~~v~l~~~V~eG~~~~i~~I~i~Gn-------~~~~~~~i~r~ 137 (189)
T 3q6b_A 73 MEDDIKKLLGRYGYAYPRV---QSMPEINDAD-----KTVKLRVNVDAGNRFYVRKIRFEGN-------DTSKDAVLRRE 137 (189)
T ss_dssp HHHHHHHHHHTTTCCSCEE---EEEEEEETTT-----TEEEEEEEEECCCCCEEEEEEEESC-------SSSCHHHHHTT
T ss_pred HHHHHHHHHHhCCCceEEe---eEEEEecCCC-----CEEEEEEEECCCCeEEEEEEEEECC-------ccCCHHHHHhh
Confidence 3344445666666655431 1111222233 689999999999 6999999982 11112334444
Q ss_pred c---CCCCCCHHHHHHHHHHHhhcCcccC
Q psy8036 158 V---QGRKFTETALDDLKEALTSRGQTYL 183 (194)
Q Consensus 158 L---~G~~~~~~~i~~~l~~~~~~~~~~~ 183 (194)
| .|.+|+...+++....+.. --||
T Consensus 138 l~~~~G~~~n~~~l~~~~~~L~~--lg~F 164 (189)
T 3q6b_A 138 MRQMEGAWLGSDLVDQGKERLNR--LGFF 164 (189)
T ss_dssp CCSCTTSBCCHHHHHHHHHHHHH--HSCC
T ss_pred ccCCCCCccCHHHHHHHHHHHHh--CCCc
Confidence 4 3999999999988888764 3444
No 15
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*
Probab=65.26 E-value=20 Score=29.06 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=38.0
Q ss_pred EEEEEEEeCCeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHh
Q psy8036 120 LVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALT 176 (194)
Q Consensus 120 i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~ 176 (194)
+-+.+++++|+|++++|.- |-+.+ -..-..+.|+.|.|.+++.+.++++...+.
T Consensus 198 ~a~~~~~~~~~i~~~ria~--Ggv~~-~p~ra~~~E~~L~G~~~~~~~~~~a~~~~~ 251 (287)
T 1ffv_C 198 CAVVMRKSGNTVSHIRIAL--TNVAP-TALRAEAAEAALLGKAFTKEAVQAAADAAI 251 (287)
T ss_dssp EEEEEEEETTEEEEEEEEE--ESSSS-SCEECHHHHHTTBTSBCCHHHHHHHHHHHH
T ss_pred EEEEEEEcCCeEEEEEEEE--EcccC-CcccCHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3455566789999999973 11111 111146889999999999999999887664
No 16
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=64.98 E-value=15 Score=26.33 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=27.6
Q ss_pred ceEEEEEEEe-CCeEEEEEEEcCCCCCCcccccc----HHHHHhhcCCCCCC
Q psy8036 118 GQLVISLEIV-KGLIESVCFKIPPALVNDEHFLQ----DAELLCSVQGRKFT 164 (194)
Q Consensus 118 G~i~v~l~v~-~G~I~~i~i~~~~~~~~~~df~~----~~~l~~~L~G~~~~ 164 (194)
..+++.+.|+ +|+|++++|.+- -+.. ..-+.+.++|...+
T Consensus 40 D~i~l~l~v~~~~~I~d~~f~~~-------GCais~ASaS~~te~i~Gkt~~ 84 (129)
T 3lvl_A 40 DVMKLQIKVNDEGIIEDARFKTY-------GCGSAIASSSLVTEWVKGKSLD 84 (129)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEE-------SCHHHHHHHHHHHHHHTTCCHH
T ss_pred CEEEEEEEECCCCeEEEEEEEec-------CCHHHHHHHHHHHHHHcCCcHH
Confidence 4899999999 599999999971 2211 12344667787654
No 17
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*
Probab=64.64 E-value=21 Score=29.00 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=37.8
Q ss_pred EEEEEEEeCCeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHh
Q psy8036 120 LVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALT 176 (194)
Q Consensus 120 i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~ 176 (194)
+-+.+++++|+|.+++|.- |-+.+ -..-..+.|+.|.|.+++.+.++++.+.+.
T Consensus 198 ~a~~~~~~~~~i~~~ria~--Ggv~~-~p~ra~~~E~~L~G~~~~~~~~~~a~~~~~ 251 (288)
T 1n62_C 198 AAVVLTMSGGKCVTASIGL--TNVAN-TPLWAEEAGKVLVGTALDKPALDKAVALAE 251 (288)
T ss_dssp EEEEEEEETTEEEEEEEEE--ESSSS-SCEECHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred EEEEEEEcCCeEEEEEEEE--ECCcC-ceEECHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3455566789999999973 11111 111136888999999999999998877653
No 18
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3
Probab=63.36 E-value=23 Score=28.76 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=38.7
Q ss_pred eEEEEEEEeCCeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q psy8036 119 QLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTS 177 (194)
Q Consensus 119 ~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~~ 177 (194)
.+-+.+++++|+|.+++|.- |-+.+ -..-..+.|+.|.|.+++.+.++++...+..
T Consensus 194 ~~a~~~~~~~~~i~~~ria~--Ggv~~-~p~r~~~~E~~L~G~~~~~~~~~~a~~~~~~ 249 (288)
T 1t3q_C 194 MAAAGLSMQGGRCVAARIAL--GAVEE-RAHQAIRANDFLVGKVIDESTAATAAELATE 249 (288)
T ss_dssp EEEEEEEEETTEEEEEEEEE--ESSSS-SCEECHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred EEEEEEEEcCCeEEEEEEEE--ECCCC-eeEEcHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 34455566789999999863 11221 1111468899999999999999998877643
No 19
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B*
Probab=61.67 E-value=22 Score=29.22 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=38.3
Q ss_pred EEEEEEEeC--CeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q psy8036 120 LVISLEIVK--GLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTS 177 (194)
Q Consensus 120 i~v~l~v~~--G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~~ 177 (194)
+-+.+.+.+ |+|++++|.- |-+.+ -..-..+.|+.|.|.+++.+.++++...+..
T Consensus 213 ~A~~~~~~~~~~~i~~~ria~--Ggv~~-~p~ra~~~E~~L~G~~~~~~~~~~a~~~~~~ 269 (305)
T 3nvz_B 213 CGMRVLFQPGSMQVKELALCY--GGMAD-RTISALKTTQKQLSKFWNEKLLQDVCAGLAE 269 (305)
T ss_dssp EEEEEEESTTSSBEEEEEEEE--ESSSS-SCEECHHHHHTTTTCBSSHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCeEEEEEEEE--EcccC-cEeeHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 345556666 8999999973 11221 1111468899999999999999998876643
No 20
>3o6u_A Uncharacterized protein CPE2226; structural genomics, protein structure initiative, NESG, CPR biology; 2.50A {Clostridium perfringens}
Probab=60.39 E-value=7 Score=28.19 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=19.5
Q ss_pred ceEEEEEEEeCCeEEEEEEEc
Q psy8036 118 GQLVISLEIVKGLIESVCFKI 138 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~ 138 (194)
|.+.|.++|++|+|.+|.+..
T Consensus 19 ~~v~V~VTVkdgkIt~i~~~~ 39 (128)
T 3o6u_A 19 YKAKLSIKVSDGKITEAKYNE 39 (128)
T ss_dssp EEEEEEEEESSSSEEEEEEEE
T ss_pred CeEEEEEEEECCEEEEEEEec
Confidence 689999999999999999975
No 21
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=51.61 E-value=11 Score=24.85 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCcceecCCCCC----ceeeeeecCCCCCCCCceEEEEEEEeCCe
Q psy8036 90 QSWEWRYGSTPK----FTISQSFDIPDEHGAPGQLVISLEIVKGL 130 (194)
Q Consensus 90 ~sweW~yGktP~----F~~~~~~~~~~~~~~~G~i~v~l~v~~G~ 130 (194)
.+|.|.||-.-. -.....+.+.- .|...|.+.|.+|.
T Consensus 27 ~~y~WdFGDGs~~~~s~~~~~tHtY~~----~G~YtV~Ltv~~g~ 67 (80)
T 1b4r_A 27 TATRWDFGDGSAEVDAAGPAASHRYVL----PGRYHVTAVLALGA 67 (80)
T ss_dssp SEEEEECCSSCCEEEEETTEEEEEECS----SEEEEEEEEEECSS
T ss_pred CEEEEECCCCCcccccCCCCCEEECCC----CcEEEEEEEEEeCC
Confidence 379999976432 22233444433 28999999998873
No 22
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=51.40 E-value=20 Score=23.53 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=18.9
Q ss_pred ceEEEEEEEe-CCeEEEEEEEc
Q psy8036 118 GQLVISLEIV-KGLIESVCFKI 138 (194)
Q Consensus 118 G~i~v~l~v~-~G~I~~i~i~~ 138 (194)
|.+.|.+.|. +|.|.++++..
T Consensus 25 G~V~v~~~i~~~G~v~~~~v~~ 46 (90)
T 1u07_A 25 GQVKVKFDVTPDGRVDNVQILS 46 (90)
T ss_dssp EEEEEEEEECTTSCEEEEEEEE
T ss_pred eEEEEEEEECCCCCEEEEEEEe
Confidence 8999999994 99999999975
No 23
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=50.70 E-value=33 Score=28.01 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=35.7
Q ss_pred EEEEEEEeC-CeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy8036 120 LVISLEIVK-GLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEAL 175 (194)
Q Consensus 120 i~v~l~v~~-G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~ 175 (194)
+-+.+.+++ |+|.+++|.- |-+.+ -..-..+.++.|.|.+++.+.++++...+
T Consensus 201 ~A~~~~~~~~g~i~~~ria~--Ggv~~-~p~ra~~~E~~L~G~~~~~~~~~~a~~~~ 254 (296)
T 3hrd_C 201 GGMAVKVDDAGVCTWASMRG--GCIGR-YPLHFKQAEEMLVGAPLTMETMEATLPIL 254 (296)
T ss_dssp EEEEEEEETTTEEEEEEEEE--ETSSS-SCEECHHHHHHHTTSBCCHHHHHTTHHHH
T ss_pred EEEEEEEcCCCeEEEEEEEE--ECCCc-cccchHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 334455564 6999999973 21222 11114688999999999999888776554
No 24
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=49.05 E-value=34 Score=29.90 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=37.9
Q ss_pred EEEEEEEeCCeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHh
Q psy8036 120 LVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALT 176 (194)
Q Consensus 120 i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~ 176 (194)
+-+.+++++|+|.+++|.- |-+.+ -..-..+.|+.|.|.+++.+.++++.+.+.
T Consensus 366 ~A~~~~~~~~~i~~~ria~--Ggva~-~p~ra~~~E~~L~G~~~~~~~~~~a~~~~~ 419 (462)
T 2w3s_A 366 GCLNLTLKGSKIETARIAF--GGMAG-VPKRAAAFEAALIGQDFREDTIAAALPLLA 419 (462)
T ss_dssp EEEEEEEETTEEEEEEEEE--ESSSS-SCEECHHHHHTTTTSBCSHHHHHHHGGGHH
T ss_pred EEEEEEEcCCeEEEEEEEE--EcCCC-cceEhHHHHHHhcCCCCCHHHHHHHHHHhh
Confidence 4456667899999999973 11111 111146889999999999999988876553
No 25
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=47.35 E-value=23 Score=23.92 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.8
Q ss_pred ceEEEEEEE-eCCeEEEEEEEc
Q psy8036 118 GQLVISLEI-VKGLIESVCFKI 138 (194)
Q Consensus 118 G~i~v~l~v-~~G~I~~i~i~~ 138 (194)
|.+.|.+.| .+|.|.++++..
T Consensus 40 G~V~v~f~I~~~G~v~~~~v~~ 61 (106)
T 2k9k_A 40 GFVTLSFTIDTTGKAVDINVVD 61 (106)
T ss_dssp CEEEEEEEEETTTEEEEEEEEE
T ss_pred eEEEEEEEECCCCcEEEEEEEE
Confidence 799999999 599999999975
No 26
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=44.40 E-value=19 Score=25.38 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=21.9
Q ss_pred EEEEEeCCeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCH
Q psy8036 122 ISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTE 165 (194)
Q Consensus 122 v~l~v~~G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~ 165 (194)
..+.+++|+|.+.+.|- |.. .+.+++.|.|.+-
T Consensus 107 ~~~~v~dGkI~~~r~y~--------D~~---~l~~q~~g~~~~~ 139 (143)
T 3dm8_A 107 LFTQFQNGRLTNLRMVL--------DTF---DLVEQALGRPIHL 139 (143)
T ss_dssp EEEEEETTEEEEEEEEE--------CHH---HHHHHHHTC----
T ss_pred EEEEEECCEEEEEEEEE--------cHH---HHHHHHhCCCcCC
Confidence 34778999999999997 653 5555666877654
No 27
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=42.99 E-value=25 Score=27.75 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHhhcc
Q psy8036 33 EVSMDRLIKSLGYEYLRTKA 52 (194)
Q Consensus 33 ~i~~e~f~~~l~~~f~~~~~ 52 (194)
.+++++++++|.++|.+.++
T Consensus 207 ~~~~~ev~~~l~~~f~~~~~ 226 (237)
T 2qhs_A 207 KVPMEEAKARVVAAFAEVFG 226 (237)
T ss_dssp CCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 58999999999999998743
No 28
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=42.27 E-value=58 Score=26.62 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=39.8
Q ss_pred ceEEEEEEEeCC-eEEEEEEEcCCC-----CCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHh
Q psy8036 118 GQLVISLEIVKG-LIESVCFKIPPA-----LVNDEHFLQDAELLCSVQGRKFTETALDDLKEALT 176 (194)
Q Consensus 118 G~i~v~l~v~~G-~I~~i~i~~~~~-----~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~ 176 (194)
+.+.+.+.|..| .|.+|.|.|.++ .+++ +. +..+.....|.+|+...+.++...+.
T Consensus 126 ~~v~l~~~V~egp~I~~I~~~Gn~~~~~~~~~~~-~~--L~~~l~l~~G~~~n~~~l~~~~~~I~ 187 (316)
T 3mc9_A 126 LGVRVSFIVQPNPVLSKVEIQANPGTNVPSVLPQ-AT--ADEIFRAQYGKILNLRDLQEGIKELT 187 (316)
T ss_dssp TEEEEEEEEEECCBCCEEEEECCC----CCSSCT-TH--HHHHHGGGTTSBCCHHHHHHHHHHHH
T ss_pred CeEEEEEEEecCceEEEEEEeccccccccccCCH-HH--HHHHhcccCCCeeCHHHHHHHHHHHH
Confidence 468899999888 899999999411 1222 11 33455677899999999988776653
No 29
>2kzx_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Clostridium thermocellum}
Probab=41.24 E-value=30 Score=24.75 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=18.2
Q ss_pred eEEEEEEEeCCeEEEEEEEc
Q psy8036 119 QLVISLEIVKGLIESVCFKI 138 (194)
Q Consensus 119 ~i~v~l~v~~G~I~~i~i~~ 138 (194)
.+.|.+.|++|+|.+|.+..
T Consensus 19 ~~~V~vtV~dgkIt~i~i~~ 38 (131)
T 2kzx_A 19 KDTVTIEVKNGKIVSVDWNA 38 (131)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred eEEEEEEEECCEEEEEEEEE
Confidence 78899999999999999974
No 30
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B*
Probab=39.58 E-value=41 Score=27.98 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=36.5
Q ss_pred eEEEEEEEeCCeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHh
Q psy8036 119 QLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALT 176 (194)
Q Consensus 119 ~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~ 176 (194)
.+-+.+++++|+|++++|.- |-+.+ -..-. +.++.| |.+++.+.++++.+.+.
T Consensus 237 ~~A~~~~~~~~~i~~~ria~--Ggva~-~p~ra-~~E~~L-G~~~~~~~~~~a~~~~~ 289 (324)
T 1rm6_B 237 GVAAALQRDGDRIAGLRVAI--TGSNS-APLMV-PVDALL-GGNWDDAAAETLAQLVR 289 (324)
T ss_dssp EEEEEEEEETTEEEEEEEEE--ESSSS-SCEEC-CCGGGT-TSCCSHHHHHHHHHHHH
T ss_pred EEEEEEEEcCCcEEEEEEEE--EcCCC-eEEeh-HHHHHc-CCCCCHHHHHHHHHhhh
Confidence 34455667899999999873 21222 11115 678889 99999999998887654
No 31
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=39.39 E-value=77 Score=23.74 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=37.0
Q ss_pred ceEEEEEEEeCC-eEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHh
Q psy8036 118 GQLVISLEIVKG-LIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALT 176 (194)
Q Consensus 118 G~i~v~l~v~~G-~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~ 176 (194)
+.+.+.+.|..| .|.+|.|.|... +++ + .+.++.....|.+|+...+.++...+.
T Consensus 65 ~~~~l~~~v~eg~~i~~i~~~G~~~-~~~-~--~l~~~~~~~~G~~~~~~~l~~~~~~i~ 120 (235)
T 2x8x_X 65 LGVRITFVVRPYPVLRAVQVAGNQV-LTQ-E--KVNEIFAPQIGRTLNLRELQAGIEKIN 120 (235)
T ss_dssp TEEEEEEEEEECCBCCEEEEESCSS-SCH-H--HHHHHHGGGTTSBCCHHHHHHHHHHHH
T ss_pred CcEEEEEEEEecceEEEEEEECCcc-CCH-H--HHHHHhCccCCCCcCHHHHHHHHHHHH
Confidence 356777888777 999999998311 111 0 023444556699999999988887664
No 32
>1cc1_L Hydrogenase (large subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.18.1.1
Probab=38.68 E-value=30 Score=30.44 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=38.5
Q ss_pred ceEEEEEEEeCCeEEEEEEEcCCCC-CCcccccc-HHHHHhhcCCCCCCHH----HHHHHHHHHh
Q psy8036 118 GQLVISLEIVKGLIESVCFKIPPAL-VNDEHFLQ-DAELLCSVQGRKFTET----ALDDLKEALT 176 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~~~~~-~~~~df~~-~~~l~~~L~G~~~~~~----~i~~~l~~~~ 176 (194)
|.+-..+.+++|+|..++|..|..| +++-|-.. ...++++|.|.+.... .+..++.++|
T Consensus 426 G~L~H~v~id~g~i~~~~i~~PT~~N~~p~d~~~~~g~~e~~l~G~~v~d~~~p~~i~~iirSfD 490 (498)
T 1cc1_L 426 GALLHYLKIKDKKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGRLVRSYD 490 (498)
T ss_dssp EEEEEEEEEETTEEEEEEEEETHHHHSCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTC
T ss_pred eeEEEEEEEcCCEEEEEEEECCChhhccCccccchHHHHHHHhcCCChhhhcchhhhhheeeecC
Confidence 8888999999999999999986211 00001000 1278899999987433 4566666654
No 33
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Probab=38.43 E-value=35 Score=27.06 Aligned_cols=43 Identities=12% Similarity=0.352 Sum_probs=29.0
Q ss_pred ceEEEEEEE-eCCeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCH
Q psy8036 118 GQLVISLEI-VKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTE 165 (194)
Q Consensus 118 G~i~v~l~v-~~G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~ 165 (194)
|.+.|.|.| .+|.|.+++|....| + ..| +.+...++...+|..
T Consensus 164 G~V~V~f~Id~dG~V~~v~V~~SSG---~-~~L-D~aAl~AVr~~rf~P 207 (229)
T 2grx_C 164 GQVKVKFDVTPDGRVDNVQILSAKP---A-NMF-EREVKNAMRRWRYEP 207 (229)
T ss_dssp EEECEEEECCTTSCCEEEEECCCSS---S-TTS-HHHHHHHTTSCCCCT
T ss_pred EEEEEEEEECCCCCEEEEEEEecCC---c-HHH-HHHHHHHHHHhCCCC
Confidence 899999999 599999999986333 1 223 334445566666654
No 34
>2wpn_B Periplasmic [nifese] hydrogenase, large subunit, selenocysteine-containing; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=37.21 E-value=29 Score=30.49 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=38.6
Q ss_pred ceEEEEEEEeCCeEEEEEEEcCCCC-CCcccccc-HHHHHhhcCCCCCCHH----HHHHHHHHHh
Q psy8036 118 GQLVISLEIVKGLIESVCFKIPPAL-VNDEHFLQ-DAELLCSVQGRKFTET----ALDDLKEALT 176 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~~~~~-~~~~df~~-~~~l~~~L~G~~~~~~----~i~~~l~~~~ 176 (194)
|.+-..+.+++|+|..++|..|..| +++-|-.. ...++++|.|.+.... .+..++.++|
T Consensus 423 G~L~H~v~id~g~i~~~~i~~PT~~N~~p~d~~~~~g~~e~~l~G~~v~d~~~p~~i~~iirSfD 487 (495)
T 2wpn_B 423 GSLLHYVKVKDSKIDNYQIVSASLWNCNPRDDMGQRGAVEEALIGIPVDDIQNPVNVARLIRAFD 487 (495)
T ss_dssp EEEEEEEEEETTEEEEEEEECHHHHHSCCCCTTCCCCHHHHHTTTCBCSCTTSCHHHHHHHHHTC
T ss_pred eeEEEEEEEcCCEEEEEEEECCchhhcCCccccchHHHHHHHhcCCChhhhccchhhhHhhhhcC
Confidence 8888999999999999999985211 00001100 1278899999988433 4566666654
No 35
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=37.16 E-value=31 Score=22.77 Aligned_cols=38 Identities=13% Similarity=0.346 Sum_probs=25.2
Q ss_pred CCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEc
Q psy8036 90 QSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKI 138 (194)
Q Consensus 90 ~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~ 138 (194)
..|+|+|...|.+.... - -.+.|.|+ .+|++..+.-++
T Consensus 38 ~~W~Yv~~~~~g~~~~~-----~-----~~l~V~Fd-~~g~V~~~~~~~ 75 (88)
T 2yh9_A 38 NTWFYVFRQQPGHEGVT-----Q-----QTLTLTFN-SSGVLTNIDNKP 75 (88)
T ss_dssp SEEEEECCSCTTCCSSS-----C-----CEEEEEEC-TTSBEEEEEEEC
T ss_pred CeEEEEEEeecCCCCcE-----E-----EEEEEEEc-CCCeEEEEEccc
Confidence 34888888776542111 0 26677776 788999998876
No 36
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=36.21 E-value=31 Score=22.39 Aligned_cols=36 Identities=14% Similarity=0.417 Sum_probs=21.7
Q ss_pred CCcceecCCCCCce-eeeeecCCCCCCCCceEEEEEEEeCC
Q psy8036 90 QSWEWRYGSTPKFT-ISQSFDIPDEHGAPGQLVISLEIVKG 129 (194)
Q Consensus 90 ~sweW~yGktP~F~-~~~~~~~~~~~~~~G~i~v~l~v~~G 129 (194)
-+|.|.||-....+ ....+.+.. .|...|.|.|.++
T Consensus 34 ~~y~W~fgdG~~s~~~~~~hty~~----~G~Y~v~LtVtd~ 70 (85)
T 2y72_A 34 VSYDWDFGDGATSRGKNSVHAYKK----AGTYNVTLKVTDD 70 (85)
T ss_dssp EEEEEECSSSCEEESSEEEEECSS----CEEEEEEEEEEET
T ss_pred EEEEEEECCCCcccccceEEEcCC----CeEEEEEEEEEEC
Confidence 47899997643322 222333432 2899999998643
No 37
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=35.90 E-value=1.1e+02 Score=24.51 Aligned_cols=51 Identities=14% Similarity=0.259 Sum_probs=38.3
Q ss_pred ceEEEEEEEeCC---eEEEEEEEcCCCCCCcccc-ccHHHHH---hhcCCCCCCHHHHHHHHHHHh
Q psy8036 118 GQLVISLEIVKG---LIESVCFKIPPALVNDEHF-LQDAELL---CSVQGRKFTETALDDLKEALT 176 (194)
Q Consensus 118 G~i~v~l~v~~G---~I~~i~i~~~~~~~~~~df-~~~~~l~---~~L~G~~~~~~~i~~~l~~~~ 176 (194)
+.+.+.+.|..| .|.+|.|.| +. .....+. ..-.|.+|+...+.+.+..+.
T Consensus 236 ~~v~v~i~v~eG~~~~i~~I~i~g--------~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~l~ 293 (335)
T 2qdf_A 236 KGIYVTVNITEGDQYKLSGVEVSG--------NLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIK 293 (335)
T ss_dssp SEEEEEEEEECCCCCEEEEEEEEE--------ECTTCHHHHHHHTCCCTTEECCHHHHHHHHHHHH
T ss_pred CEEEEEEEEccCCcEEEEEEEEEc--------cccCChHHHHHhcCCCCCCccCHHHHHHHHHHHH
Confidence 688999999999 899999998 32 1122333 333599999999998887765
No 38
>1wui_L Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.18.1.1 PDB: 1ubj_L 1ubh_L 1ubl_L 1ubm_L 1ubo_L 1ubr_L 1ubt_L 1ubu_L 1wuh_L* 1ubk_L* 1wuj_L 1wuk_L 1wul_L 1h2r_L 1h2a_L
Probab=34.21 E-value=38 Score=30.17 Aligned_cols=59 Identities=14% Similarity=0.158 Sum_probs=38.2
Q ss_pred ceEEEEEEEeCCeEEEEEEEcCCCC-CCcccccc-HHHHHhhcCCCCCCH----HHHHHHHHHHh
Q psy8036 118 GQLVISLEIVKGLIESVCFKIPPAL-VNDEHFLQ-DAELLCSVQGRKFTE----TALDDLKEALT 176 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~~~~~-~~~~df~~-~~~l~~~L~G~~~~~----~~i~~~l~~~~ 176 (194)
|.+-..+.+++|+|...++..|..| +++-|-.. ...++++|+|.+... -.+..++.++|
T Consensus 462 G~L~H~i~i~~Gki~~y~ii~PT~~N~~p~d~~g~~g~~e~al~G~~v~d~~~p~~i~~iirSfD 526 (534)
T 1wui_L 462 GGLSHWIRIEDGKIGNFQLVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVHSFD 526 (534)
T ss_dssp EEEEEEEEEETTEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTC
T ss_pred eeEEEEEEECCCEEEEEEEECCChhhcccccccchhhHHHHHhcCCchhhccchHHHHHHHHcCC
Confidence 8888999999999999999975211 00000000 147889999998732 24556666554
No 39
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=34.11 E-value=14 Score=36.69 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=31.5
Q ss_pred eEEEEEEEeCCeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHh
Q psy8036 119 QLVISLEIVKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALT 176 (194)
Q Consensus 119 ~i~v~l~v~~G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~ 176 (194)
-+.|.++-.+|+|++++|.- |-+.. .+......++.|+|++++.+.+++++..+.
T Consensus 444 a~~v~l~~~~~~v~~~~iaf--GGma~-~~~rA~~te~~L~Gk~~~~~~l~~A~~~L~ 498 (1335)
T 3zyv_A 444 GMKVVFKEDTNTITDLGILY--GGIGA-TVISADKSCRQLIGRCWDEEMLDDAGKMIC 498 (1335)
T ss_dssp EEEEEC----CBCSEEEEEE--ESSSS-SCC---CTTGGGTTCBC---CHHHHHHHHH
T ss_pred eeeEEEecCCCeEeEEEEEE--ecCcC-ccccHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34444444568999999873 22222 222245778999999999999999987764
No 40
>3uqy_L Hydrogenase-1 large chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_L* 3use_L*
Probab=33.13 E-value=97 Score=28.01 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=33.9
Q ss_pred ceEEEEEEEeCCeEEEEEEEcCCCC-CCcccccc-HHHHHhhcCCCCCC
Q psy8036 118 GQLVISLEIVKGLIESVCFKIPPAL-VNDEHFLQ-DAELLCSVQGRKFT 164 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~~~~~-~~~~df~~-~~~l~~~L~G~~~~ 164 (194)
|.+.-.+.|++|+|.+-++..|..| .++-|-.. .-.+|++|+|+|..
T Consensus 510 GaL~Hwi~I~~gkI~nYQ~v~PTtWN~sPRD~~G~~Gp~E~ALigtpv~ 558 (582)
T 3uqy_L 510 GALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMA 558 (582)
T ss_dssp EEEEEEEEEETTEEEEEEEECHHHHHTCCCCTTCCCCHHHHHHTTCBCS
T ss_pred cccceeEEEeCCEeceeEEECCCCCcCCCCCCCCCCCHHHHHhcCCCCC
Confidence 8888999999999999999976221 00112222 34789999999884
No 41
>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L
Probab=32.64 E-value=41 Score=30.04 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=38.2
Q ss_pred ceEEEEEEEeCCeEEEEEEEcCCCC-CCcccccc-HHHHHhhcCCCCCCH----HHHHHHHHHHh
Q psy8036 118 GQLVISLEIVKGLIESVCFKIPPAL-VNDEHFLQ-DAELLCSVQGRKFTE----TALDDLKEALT 176 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~~~~~-~~~~df~~-~~~l~~~L~G~~~~~----~~i~~~l~~~~ 176 (194)
|.+-..+.+++|+|...++..|..| +++-|-.. ...++++|+|.+... -.+..++.++|
T Consensus 477 G~L~H~i~i~~gki~~yqiv~PT~~N~~p~d~~g~~g~~e~al~G~~v~d~~~p~~i~~iirSfD 541 (549)
T 1yqw_Q 477 GALSHWIRIKGKKIDNFQLVVPATWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFD 541 (549)
T ss_dssp EEEEEEEEEETTEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTC
T ss_pred ccEEEEEEEcCCEEEEEEEECCChhhcccccccchhhHHHHHhcCCchhhccchHHHHHHHHhCC
Confidence 8899999999999999999985211 00000000 137889999998732 24556666554
No 42
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=31.85 E-value=79 Score=27.37 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=35.3
Q ss_pred EEEEEeCCeEEEEEEEcCCCCCCccccccHHH---HHhhcCCCCCCHHHHHHHHHHHhh
Q psy8036 122 ISLEIVKGLIESVCFKIPPALVNDEHFLQDAE---LLCSVQGRKFTETALDDLKEALTS 177 (194)
Q Consensus 122 v~l~v~~G~I~~i~i~~~~~~~~~~df~~~~~---l~~~L~G~~~~~~~i~~~l~~~~~ 177 (194)
|.+.|..|.|.+|.|.|... .++ .. +.. ......|.+|+...|++.+..+..
T Consensus 127 l~i~v~eG~i~~I~i~G~~~-~~~-~~--l~~~~~~~~~~~G~~~n~~~le~~~~~L~~ 181 (554)
T 2qdz_A 127 LKLKVEWGRIKGWLIDGKPL-EGT-RD--RMMVFSAMPGWQDKVLNVFDIDQAIYNINN 181 (554)
T ss_dssp EEEEEECCEEEEEEETTEEC-CSH-HH--HHHHHHHSTTCTTCBCCHHHHHHHHHHHCS
T ss_pred EEEEEEeEEEEEEEECCCCc-cch-hh--hhhhhhhccccCCCcCCHHHHHHHHHHHhc
Confidence 67788899999999987110 000 00 122 223457999999999999988754
No 43
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=31.46 E-value=72 Score=25.64 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=31.8
Q ss_pred EEEEEEeCC-eEEEEEEEcCCCCCCccccccHHHHHhhc------CCCCCCHHHHHHHHHHHh
Q psy8036 121 VISLEIVKG-LIESVCFKIPPALVNDEHFLQDAELLCSV------QGRKFTETALDDLKEALT 176 (194)
Q Consensus 121 ~v~l~v~~G-~I~~i~i~~~~~~~~~~df~~~~~l~~~L------~G~~~~~~~i~~~l~~~~ 176 (194)
.+.+.|..| .|.+|.|.|. . .+...+|.+.| .|.+|+...++.....+.
T Consensus 67 ~l~~~V~e~p~I~~i~~~Gn-~------~~~~~~l~~~l~~~~l~~g~~~~~~~~~~~~~~l~ 122 (335)
T 2qdf_A 67 TLLVQVKERPTIASITFSGN-K------SVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLE 122 (335)
T ss_dssp EEEEEEEECCEEEEEEEESC-C------SSCHHHHHHHHHTTTCCTTSBCCTTSHHHHHHHHH
T ss_pred EEEEEEEeccEEEEEEEECC-c------cCCHHHHHHHHHhcCCCCCcccCHHHHHHHHHHHH
Confidence 355666555 8999999983 2 12223444443 678999888877776653
No 44
>1yq9_H Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.18.1.1 PDB: 2frv_L 1frv_B
Probab=31.20 E-value=55 Score=29.18 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=38.3
Q ss_pred ceEEEEEEEeCCeEEEEEEEcCCCC-CCcccccc-HHHHHhhcCCCCCC----HHHHHHHHHHHh
Q psy8036 118 GQLVISLEIVKGLIESVCFKIPPAL-VNDEHFLQ-DAELLCSVQGRKFT----ETALDDLKEALT 176 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~~~~~-~~~~df~~-~~~l~~~L~G~~~~----~~~i~~~l~~~~ 176 (194)
|.+-..+.+++|+|.+.++..|..| .++-|-.. ...++++|+|.+.. +-++..++.++|
T Consensus 464 G~L~H~i~i~~GkI~~yqiv~PTtwN~~prd~~g~~g~~E~aL~G~~v~d~~~p~ei~~~irSfD 528 (536)
T 1yq9_H 464 GMLSHWIVQRGGKIENFQLVVPSTWNLGPRCAEGKLSAVEQALIGTPIADPKRPVEILRTVHSYD 528 (536)
T ss_dssp EEEEEEEEEETTEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTC
T ss_pred ccEEEEEEEcCCEEEEEEEECCChhhccccccccchhHHHHHhcCCCcccccchHHHHHHHHcCC
Confidence 8888999999999999999975211 00001111 23788999999872 225556666554
No 45
>2kzw_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina mazei}
Probab=28.50 E-value=27 Score=25.64 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=20.6
Q ss_pred CcceecCCCC-CceeeeeecCCCCCCCCceEEEEEEEeCC
Q psy8036 91 SWEWRYGSTP-KFTISQSFDIPDEHGAPGQLVISLEIVKG 129 (194)
Q Consensus 91 sweW~yGktP-~F~~~~~~~~~~~~~~~G~i~v~l~v~~G 129 (194)
+|.|.||-.- .-...-.+.+.. .|...|.|.|.+.
T Consensus 90 s~~WdFGDG~tst~~np~htY~~----~G~YtVtLtvtn~ 125 (145)
T 2kzw_A 90 SRLWMFGDGNTSDSPSPLHTFFN----EGEYIVSLIVSNE 125 (145)
T ss_dssp EEEECCSSSSSSCCSCSEECCSS----CEEEEEEEEEECS
T ss_pred eEEEEcCCCceeCCCCceEEcCC----CcEEEEEEEEEcC
Confidence 9999997531 111122223332 2899999998653
No 46
>1cc1_L Hydrogenase (large subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.18.1.1
Probab=27.16 E-value=65 Score=28.24 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.4
Q ss_pred ceEEEEEEEeCCeEEEEEEEc
Q psy8036 118 GQLVISLEIVKGLIESVCFKI 138 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~ 138 (194)
|.+++.+.+++|+|.++.+.+
T Consensus 24 G~lri~l~vdg~~V~~a~~~g 44 (498)
T 1cc1_L 24 GHLKIEVEVKDGKVVDAKCSG 44 (498)
T ss_dssp SCEEEEEEEETTEEEEEEEEE
T ss_pred CcEEEEEEEeCCEEEEEEEec
Confidence 789999999999999999976
No 47
>1wui_L Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.18.1.1 PDB: 1ubj_L 1ubh_L 1ubl_L 1ubm_L 1ubo_L 1ubr_L 1ubt_L 1ubu_L 1wuh_L* 1ubk_L* 1wuj_L 1wuk_L 1wul_L 1h2r_L 1h2a_L
Probab=26.84 E-value=62 Score=28.76 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.3
Q ss_pred ceEEEEEEEeCCeEEEEEEEc
Q psy8036 118 GQLVISLEIVKGLIESVCFKI 138 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~ 138 (194)
|.+++.+.|++|+|+++.+.|
T Consensus 17 Ghlri~l~vd~~~V~~a~~~g 37 (534)
T 1wui_L 17 GHLRIEVEVENGKVKNAYSSS 37 (534)
T ss_dssp SCEEEEEEEETTEEEEEEEEE
T ss_pred cceEEEEEEcCCEEEEEEEcc
Confidence 789999999999999999976
No 48
>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L
Probab=26.25 E-value=64 Score=28.79 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.3
Q ss_pred ceEEEEEEEeCCeEEEEEEEc
Q psy8036 118 GQLVISLEIVKGLIESVCFKI 138 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~ 138 (194)
|.+++.+.|++|+|+++.+.|
T Consensus 26 Ghlri~v~vd~~~V~~a~~~g 46 (549)
T 1yqw_Q 26 GHLRIMVEVENGKVKDAWSSS 46 (549)
T ss_dssp SCEEEEEEEETTEEEEEEEEE
T ss_pred cceEEEEEEcCCEEEEEEEcc
Confidence 789999999999999999876
No 49
>2wpn_B Periplasmic [nifese] hydrogenase, large subunit, selenocysteine-containing; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=26.03 E-value=70 Score=27.97 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=19.4
Q ss_pred ceEEEEEEEeCCeEEEEEEEc
Q psy8036 118 GQLVISLEIVKGLIESVCFKI 138 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~ 138 (194)
|.+++.+.+++|+|.++...+
T Consensus 29 G~lri~l~vd~~~V~~a~~~g 49 (495)
T 2wpn_B 29 GHLKAEVVVENGKVVDARLSG 49 (495)
T ss_dssp SCEEEEEEEETTEEEEEEEEE
T ss_pred ccEEEEEEEeCCEEEEEEEec
Confidence 799999999999999999976
No 50
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=25.34 E-value=1.4e+02 Score=29.75 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=37.0
Q ss_pred EEEEEeC--CeEEEEEEEcCCCCCCccccccHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q psy8036 122 ISLEIVK--GLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTS 177 (194)
Q Consensus 122 v~l~v~~--G~I~~i~i~~~~~~~~~~df~~~~~l~~~L~G~~~~~~~i~~~l~~~~~ 177 (194)
+.+.+++ |+|++++|.- |-+.+ -..-..+.++.|.|.+++.+.++++++.+..
T Consensus 438 ~~v~~~~~~~~i~~~rIa~--Ggva~-~p~ra~~~E~~L~Gk~~~~~~l~~A~~~l~~ 492 (1332)
T 3unc_A 438 MRVLFQPGSMQVKELALCY--GGMAD-RTISALKTTQKQLSKFWNEKLLQDVCAGLAE 492 (1332)
T ss_dssp EEEEESTTSSBEEEEEEEE--ESSSS-SCEECHHHHHTTTTCBSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCeEEEEEEEE--ECCCC-ccccHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 4455565 7999999973 11222 2222468899999999999999998876643
No 51
>1yq9_H Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.18.1.1 PDB: 2frv_L 1frv_B
Probab=24.91 E-value=71 Score=28.44 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.4
Q ss_pred ceEEEEEEEeCCeEEEEEEEc
Q psy8036 118 GQLVISLEIVKGLIESVCFKI 138 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~ 138 (194)
|.+++.+.|++|+|.++...|
T Consensus 19 Ghlri~~~vd~~~V~~a~~~g 39 (536)
T 1yq9_H 19 GHLRIEVEVEGGKIKNAWSMS 39 (536)
T ss_dssp SCEEEEEEEETTEEEEEEEEE
T ss_pred cceEEEEEEeCCEEEEEEEcc
Confidence 789999999999999999876
No 52
>1e3d_B [NIFE] hydrogenase large subunit; molecular modelling, electron transfer; HET: FSX; 1.8A {Desulfovibrio desulfuricans} SCOP: e.18.1.1
Probab=24.79 E-value=74 Score=28.37 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=38.1
Q ss_pred ceEEEEEEEeCCeEEEEEEEcCCCC-CCcccccc-HHHHHhhcCCCCCC----HHHHHHHHHHHh
Q psy8036 118 GQLVISLEIVKGLIESVCFKIPPAL-VNDEHFLQ-DAELLCSVQGRKFT----ETALDDLKEALT 176 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~~~~~-~~~~df~~-~~~l~~~L~G~~~~----~~~i~~~l~~~~ 176 (194)
|.+-..+.+++|+|.+.++..|..| .++-|-.. ...++++|+|.+.. +-++..++.++|
T Consensus 470 G~L~H~i~i~~GkI~~yqiv~PTtwN~~prd~~g~~g~~e~aL~G~~v~d~~~p~ei~~~irSfD 534 (542)
T 1e3d_B 470 GGLSHWMTIEDGKIDNFQLVVPTTWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIHSFD 534 (542)
T ss_dssp EEEEEEEEEETTEEEEEEEECHHHHHTCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTC
T ss_pred eeEEEEEEECCCEEEEEEEECCChhhcCccccccchhHHHHHhcCCCcccccchhHHHHHHHcCC
Confidence 7888889999999999999976211 00001111 23788999999872 224555666554
No 53
>2km7_A Small protein A; BAME, SMPA, BAM complex, OMP85, YAET, cell membrane, cell OU membrane, lipoprotein, membrane, palmitate, membrane protei; NMR {Escherichia coli} PDB: 2kxx_A
Probab=24.79 E-value=54 Score=22.26 Aligned_cols=36 Identities=14% Similarity=0.345 Sum_probs=23.7
Q ss_pred cceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCeEEEEEEEc
Q psy8036 92 WEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGLIESVCFKI 138 (194)
Q Consensus 92 weW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~I~~i~i~~ 138 (194)
|+|+|...|.+.... - -.+.|.|+ ++|++..+.-++
T Consensus 54 W~Yv~~~~~g~~~~~-----~-----~~l~V~Fd-~~g~V~~i~~~~ 89 (102)
T 2km7_A 54 WFYVFRQQPGHEGVT-----Q-----QTLTLTFN-SSGVLTNIDNKP 89 (102)
T ss_dssp EEECCCSCCSSSSCC-----C-----CCEEEEEE-TTTEEEEEECCC
T ss_pred EEEEEeeecCCCCcE-----E-----EEEEEEEC-CCCeEEEEeccC
Confidence 667766655432111 0 36788887 789999998776
No 54
>3myr_B Nickel-dependent hydrogenase large subunit; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.18.1.0
Probab=24.00 E-value=85 Score=28.23 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=38.0
Q ss_pred ceEEEEEEEeCCeEEEEEEEcCCCC-CCcccccc-HHHHHhhcC-CCCCC----HHHHHHHHHHH
Q psy8036 118 GQLVISLEIVKGLIESVCFKIPPAL-VNDEHFLQ-DAELLCSVQ-GRKFT----ETALDDLKEAL 175 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~~~~~-~~~~df~~-~~~l~~~L~-G~~~~----~~~i~~~l~~~ 175 (194)
|.+.-.+.+++|+|++-++.-|..| .++-|-.. .-.+|++|+ |+|.. +-+|..++.++
T Consensus 488 GaL~Hwi~I~dGkI~nYQ~VvPTTWN~sPRD~~G~~Gp~E~aLi~gtpv~d~~~Plei~r~irSF 552 (561)
T 3myr_B 488 GALGHWIVIEDGRIANYQAVVPSTWNAGPRDGRGQAGAYEAALQDNHQLVDVKQPIEILRTIHSF 552 (561)
T ss_dssp EEEEEEEEEETTEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHHSSCBCSCTTSCHHHHHHHHHT
T ss_pred ccceeEEEEeCCEEeEEEEECCCcCcCCCCCCCCCcCHHHHHHhCCCCCCCCCchHhHHHHHHhc
Confidence 7888999999999999999965211 00102222 247899999 99884 34444444443
No 55
>1e3d_B [NIFE] hydrogenase large subunit; molecular modelling, electron transfer; HET: FSX; 1.8A {Desulfovibrio desulfuricans} SCOP: e.18.1.1
Probab=22.75 E-value=83 Score=28.06 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.2
Q ss_pred ceEEEEEEEeCCeEEEEEEEc
Q psy8036 118 GQLVISLEIVKGLIESVCFKI 138 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~ 138 (194)
|.+++.+.|++|+|.++...|
T Consensus 25 G~lri~~~vd~~~V~~a~~~g 45 (542)
T 1e3d_B 25 GHLRIEVEVEGGVIKEARSCA 45 (542)
T ss_dssp SCEEEEEEEETTEEEEEEEEE
T ss_pred cceEEEEEEcCCEEEEEEEcc
Confidence 789999999999999999876
No 56
>4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A*
Probab=21.17 E-value=2.1e+02 Score=24.88 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=32.4
Q ss_pred hhhHHHHHhhhCCcceecCCCCCceeeeeecCCCCCCCCceEEEEEEEeCCe-E-EEEEEEcCCC
Q psy8036 79 FPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEIVKGL-I-ESVCFKIPPA 141 (194)
Q Consensus 79 ~~~i~~~~~k~~sweW~yGktP~F~~~~~~~~~~~~~~~G~i~v~l~v~~G~-I-~~i~i~~~~~ 141 (194)
.++|.+++++| .||+.|+-.-..+..+.+ ..+.|.+.. +|+ + -.+.|+.|+|
T Consensus 81 R~EI~~l~q~~-----~yG~~P~~p~~vt~~~s~-----~~v~I~v~~-~g~s~sf~~~i~lP~g 134 (433)
T 4g4g_A 81 RAEINKILQQY-----ELGEYPGPPDSVEASLSG-----NSITVRVTV-GSKSISFSASIRKPSG 134 (433)
T ss_dssp HHHHHHHHHHH-----TTCCCCCCCSEEEEEECS-----SEEEEEEEE-TTEEEEEEEEEECCSS
T ss_pred HHHHHHHHHHH-----hCCCCCCCCCceEEEEeC-----CEEEEEEEc-CCeeEEEEEEEECCCC
Confidence 46777777755 689998754444444444 477777764 443 3 3677777655
No 57
>3ayx_A Membrane-bound hydrogenase large subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_A 3ayz_A 3rgw_L
Probab=20.92 E-value=81 Score=28.53 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=38.2
Q ss_pred ceEEEEEEEeCCeEEEEEEEcCCCC-CCcccccc-HHHHHhhcCCCCC-CH---HHHHHHHHHHh
Q psy8036 118 GQLVISLEIVKGLIESVCFKIPPAL-VNDEHFLQ-DAELLCSVQGRKF-TE---TALDDLKEALT 176 (194)
Q Consensus 118 G~i~v~l~v~~G~I~~i~i~~~~~~-~~~~df~~-~~~l~~~L~G~~~-~~---~~i~~~l~~~~ 176 (194)
|.+-..+.+++|+|.+.++..|..| .++-|-.. ...++++|+|.+. +. .++..++.++|
T Consensus 524 G~L~H~i~i~~GkI~~yqivvPTtwN~~Prd~~g~~g~~e~aL~G~~vad~~~p~ei~r~irSfD 588 (596)
T 3ayx_A 524 GALAHWIVIEKGKIKNYQCVVPTTWNGSPRDPKGNIGAFEASLMGTPMERPDEPVEVLRTLHSFD 588 (596)
T ss_dssp EEEEEEEEEETTEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTC
T ss_pred ccEEEEEEEcCCEEEEEEEECCchhhcccccccchhHHHHHHhcCCccCCccchHHHHHHHHhCC
Confidence 8999999999999999999975211 00001111 1378899999998 33 34445555543
No 58
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0
Probab=20.66 E-value=1e+02 Score=20.73 Aligned_cols=15 Identities=13% Similarity=0.116 Sum_probs=13.5
Q ss_pred EEEeCCeEEEEEEEc
Q psy8036 124 LEIVKGLIESVCFKI 138 (194)
Q Consensus 124 l~v~~G~I~~i~i~~ 138 (194)
+.+++|+|.++..+-
T Consensus 109 ~~~~dGkI~~~~~y~ 123 (134)
T 3grd_A 109 WQLENGKIVKFKQYV 123 (134)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEEECCEEEEEEEEe
Confidence 678999999999887
Done!