RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8036
         (194 letters)



>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 246

 Score = 49.4 bits (117), Expect = 4e-08
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 13/89 (14%)

Query: 10  KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
           K + +    S  +   NL E+ P ++ +++ +++   +       +E             
Sbjct: 170 KKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVE------------A 217

Query: 70  QTINPTD-DWFPGLAKIQSEYQSWEWRYG 97
           + I+P      P  A+  +   SWEW +G
Sbjct: 218 EIISPNKTPDLPNFAETFARQSSWEWNFG 246


>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma
           acidophilum [TaxId: 2303]}
          Length = 256

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 16/89 (17%)

Query: 10  KGIISNATASTPAPTLNLQEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRGF 69
           +        ST     N+ +    VS+D +  +L   +  T  I   +            
Sbjct: 182 EKFRDKIAKSTRERVANVTDFVD-VSIDEVRNALIRGFSETLHIDFREDT---------- 230

Query: 70  QTINPTDDWFPGLAKIQSE-YQSWEWRYG 97
                T+       ++  + Y + EW  G
Sbjct: 231 ----ITEKEESLARELFDKKYSTEEWNMG 255


>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal
           domain {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 241

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 17/90 (18%)

Query: 10  KGIISNATASTPAPTLNL-QEVCPEVSMDRLIKSLGYEYLRTKAITMEDGGEGQIAKQRG 68
               S    S  A   N+  E+  ++++++    L  EY++ +   M +           
Sbjct: 167 DKFESKGVKSVRARVTNIINELPKKITVEKFRDLL-LEYMKKEYPEMTEY---------- 215

Query: 69  FQTINPTDDWFPGLAKI-QSEYQSWEWRYG 97
                 +++    + +I  +++ +W+W YG
Sbjct: 216 ----VFSEEELAEINRIKDTKFGTWDWNYG 241


>g1k3b.1 d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase I),
           catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 233

 Score = 27.7 bits (60), Expect = 0.76
 Identities = 11/25 (44%), Positives = 12/25 (48%)

Query: 1   MRIATGASMKGIISNATASTPAPTL 25
            RI  G     I S A A+TP P L
Sbjct: 209 FRIRRGTDECAIESIAVAATPIPKL 233


>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689
           {Leishmania major [TaxId: 5664]}
          Length = 182

 Score = 27.2 bits (60), Expect = 0.96
 Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 23/124 (18%)

Query: 68  GFQTI-NPTDDWFPGLAKIQSEYQSWEWRYGSTPKFTISQSFDIPDEHGAPGQLVISLEI 126
           G+Q +  P    F      + E               +   +    +        I + I
Sbjct: 32  GWQVVRKPGTCTFDLTKSFEGE--------------DLVVRYSTNQDSDKANSHNIFVYI 77

Query: 127 VKGLIESVCFKIPPALVNDEHFLQDAELLCSVQGRKFTETALDDLKEALTSRGQTYLGTS 186
            +   +++          D    +   +L +++       A D   EA   R + Y G  
Sbjct: 78  TQKNGQTMQA--------DLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPL 129

Query: 187 LDRL 190
           +  L
Sbjct: 130 VHEL 133


>d2q07a2 c.18.1.4 (A:244-393) Uncharacterized protein AF0587
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 150

 Score = 26.7 bits (59), Expect = 1.4
 Identities = 6/29 (20%), Positives = 19/29 (65%)

Query: 151 DAELLCSVQGRKFTETALDDLKEALTSRG 179
           +AE++ + +    ++ +++ LK+ + S+G
Sbjct: 122 EAEVVYTAEKDVLSDESIERLKQEIESKG 150


>d1kg0c_ d.169.1.1 (C:) EBV gp42 {Epstein-Barr virus [TaxId: 10376]}
          Length = 136

 Score = 24.8 bits (53), Expect = 6.0
 Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 70  QTINPTDDWFPGLAKIQSEYQSWEWRYGSTPKF 102
           + +N  +  + G+ ++     +W    G T K 
Sbjct: 69  RNLNAIESLWVGVYRVG--EGNWTSLDGGTFKV 99


>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 254

 Score = 24.9 bits (53), Expect = 7.9
 Identities = 7/21 (33%), Positives = 8/21 (38%)

Query: 1   MRIATGASMKGIISNATASTP 21
            +I  G    GI S   A  P
Sbjct: 232 FKILRGQDHCGIESEVVAGIP 252


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0426    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 708,761
Number of extensions: 31757
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 10
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.8 bits)