Query psy8037
Match_columns 292
No_of_seqs 286 out of 1394
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 16:49:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jk9_A SPRY domain-containing 100.0 6.5E-44 2.2E-48 312.5 17.8 201 35-235 11-211 (212)
2 3emw_A SPRY domain-containing 100.0 8E-43 2.8E-47 306.6 17.4 195 36-232 23-217 (217)
3 2afj_A Gene rich cluster, C9 g 100.0 1.4E-42 4.8E-47 306.9 11.2 199 35-235 19-217 (226)
4 3toj_A SET1/ASH2 histone methy 100.0 1.4E-31 4.8E-36 234.4 17.6 159 54-231 10-176 (213)
5 3uv9_A TRIM5alpha, tripartite 100.0 6.5E-32 2.2E-36 231.7 13.4 165 54-231 11-183 (186)
6 2vok_A 52 kDa RO protein; poly 100.0 8.7E-31 3E-35 224.9 17.5 148 54-219 8-170 (188)
7 2fbe_A Predicted: similar to R 100.0 3.6E-30 1.2E-34 223.2 19.4 161 54-231 9-185 (201)
8 2wl1_A Pyrin, marenostrin; amy 100.0 3.3E-30 1.1E-34 221.9 16.8 148 54-219 12-174 (191)
9 3kb5_A Tripartite motif-contai 100.0 1.5E-29 5.2E-34 218.2 18.0 151 54-220 11-180 (193)
10 4b3n_A Maltose-binding peripla 100.0 4.5E-29 1.5E-33 248.7 15.3 187 35-230 384-602 (602)
11 2yyo_A SPRY domain-containing 100.0 5.9E-28 2E-32 204.5 16.7 157 61-233 4-165 (171)
12 3emw_A SPRY domain-containing 98.8 6.7E-09 2.3E-13 90.5 5.4 50 236-285 168-217 (217)
13 2jk9_A SPRY domain-containing 98.7 6E-09 2E-13 90.3 5.0 54 236-289 159-212 (212)
14 2afj_A Gene rich cluster, C9 g 98.3 8.2E-08 2.8E-12 84.0 1.0 56 236-291 165-220 (226)
15 2e63_A KIAA1787 protein; struc 98.2 0.00013 4.4E-09 60.9 16.7 153 57-223 7-164 (170)
16 2yue_A Protein neuralized; str 97.6 0.0029 9.9E-08 52.5 15.5 143 57-227 9-159 (168)
17 2yyo_A SPRY domain-containing 96.3 0.003 1E-07 52.5 4.2 42 241-282 120-161 (171)
18 3toj_A SET1/ASH2 histone methy 95.3 0.016 5.4E-07 49.7 4.5 40 242-282 135-174 (213)
19 3uv9_A TRIM5alpha, tripartite 33.6 30 0.001 28.4 3.3 36 236-271 134-172 (186)
20 1hym_B CMTI-V, hydrolyzed cucu 29.7 60 0.002 17.9 3.0 15 176-191 3-17 (26)
No 1
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=100.00 E-value=6.5e-44 Score=312.46 Aligned_cols=201 Identities=72% Similarity=1.337 Sum_probs=171.0
Q ss_pred CCCCChhhccCCCCCCccCccceeeccCCCCCcEEEccCCeEEEEeCCcccCcceEeeccCCcCCeEEEEEEEeeecCCc
Q psy8037 35 QRPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGT 114 (292)
Q Consensus 35 ~~~~~~~~L~~~~~~~~~~~~~~t~dp~~~~~~l~lS~d~~~~~~~~p~~~~~~~Vlg~~gfssGkhYWEV~V~~~~~~~ 114 (292)
..+.+++.|++|+++....|.+++|||+++|++|.||+|++++++++|..+++.+|||+++|++|+|||||+|.+...++
T Consensus 11 ~~~~~~~~ll~~p~~~~~~~~~~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~~~~ 90 (212)
T 2jk9_A 11 CKPTRLDLLLDMPPVSYDVQLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGT 90 (212)
T ss_dssp CCCCHHHHHHHSCCCCHHHHHHTSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBCSSEEEEEEECCGGGCTT
T ss_pred CCccchhhhccCCCcccccccccccChhhcCCceEEeCCCeEEEEECCCCCccceEEcCCCccCCeEEEEEEEecccCCC
Confidence 46788999999999966689999999999999999997666677777766778899999999999999999998543457
Q ss_pred eeEEEEeeccccCCcCCcccccCCCCCeEEEEEcCCeEEecCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEE
Q psy8037 115 HAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFV 194 (292)
Q Consensus 115 ~w~vGVa~~~~~l~~~g~~~~lG~~~~swg~~~~~g~~~h~~~~~~~~~y~~~~~~~~~~~~~d~IGV~LD~~~GtLsFy 194 (292)
+|.||||++++.+++++....+|.+..||+|...+++++|++....+.+||.....++.+..+++|||+|||++|+||||
T Consensus 91 ~w~vGV~~~~~~r~~~g~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~G~lsFy 170 (212)
T 2jk9_A 91 HAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFI 170 (212)
T ss_dssp CCEEEEECTTSCCEEESSCCCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTTTEEEEE
T ss_pred cEEEEEEcCCccccccCcccccccCCCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCCCEEEEE
Confidence 89999999999865456677889999999998877889998765322345533222456788999999999999999999
Q ss_pred ECCeeeeeeeeecCCCceEEEEEeecCCeEEEEEEccCCCc
Q psy8037 195 VDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLDL 235 (292)
Q Consensus 195 ~ng~~lg~aF~~~~~~~lyP~fs~~~~~~~v~l~~~~~~~~ 235 (292)
+|++.++++|+++++++|||+|++.+++|+|+|+|.+++++
T Consensus 171 ~ng~~l~~aF~~~~~~~l~P~f~l~~g~~~v~l~~~~~~~~ 211 (212)
T 2jk9_A 171 VDGQYMGVAFRGLKGKKLYPVVSAVWGHCEIRMRYLNGLDP 211 (212)
T ss_dssp ETTEEEEEEECCCTTCCBEEEEEECCTTCEEEEEEEEEEC-
T ss_pred ECCEEeEEEeccCCCCEEeeEEEEEcCCcEEEEEECCCcCC
Confidence 99999999999999889999999988999999999999875
No 2
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=100.00 E-value=8e-43 Score=306.57 Aligned_cols=195 Identities=52% Similarity=1.003 Sum_probs=168.8
Q ss_pred CCCChhhccCCCCCCccCccceeeccCCCCCcEEEccCCeEEEEeCCcccCcceEeeccCCcCCeEEEEEEEeeecCCce
Q psy8037 36 RPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTH 115 (292)
Q Consensus 36 ~~~~~~~L~~~~~~~~~~~~~~t~dp~~~~~~l~lS~d~~~~~~~~p~~~~~~~Vlg~~gfssGkhYWEV~V~~~~~~~~ 115 (292)
.+.|++.|++|++.....|.+++|||++++++|.||+|++ +++..+..+++.+|||+++|++|+|||||+|.+++.++.
T Consensus 23 ~~~~L~~~l~~~~~~~~~~~~~tlDp~ta~~~L~lSed~~-~v~~~~~~~~~~~Vl~~~~~~sGrhYWEV~v~~~~~g~~ 101 (217)
T 3emw_A 23 MPEGLEELLSAPPPDLGAQRRHGWNPKDCSENIEVKEGGL-YFERRPVAQSTDGARGKRGYSRGLHAWEISWPLEQRGTH 101 (217)
T ss_dssp CCTTHHHHHHSCCCCHHHHHHTSEEEEEECTTEEEEGGGT-EEEECCBSSCEEEEEESCCBSSSEEEEEEECCGGGCTTC
T ss_pred cCHHHHHhhcCCCcccccccceEeCcccCCCCEEECCCCe-EEEECccCCCCCEEEeCCCccCccEEEEEEEcccCCCCc
Confidence 6778999999999988899999999999999999996654 677766667788999999999999999999987555568
Q ss_pred eEEEEeeccccCCcCCcccccCCCCCeEEEEEcCCeEEecCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEE
Q psy8037 116 AVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVV 195 (292)
Q Consensus 116 w~vGVa~~~~~l~~~g~~~~lG~~~~swg~~~~~g~~~h~~~~~~~~~y~~~~~~~~~~~~~d~IGV~LD~~~GtLsFy~ 195 (292)
|.||||++++++++++....+|.+..||+|.+.++.++|++....+..||.... ++.+..+++|||+|||++|+|+||+
T Consensus 102 ~~vGv~~~~~~r~~~g~~~~lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~-~~~~~~~d~IGV~LD~~~G~LsFy~ 180 (217)
T 3emw_A 102 AVVGVATALAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQ-GEQLEVPERLLVVLDMEEGTLGYAI 180 (217)
T ss_dssp CEEEEECTTSCCEESSSCCCTTSSTTEEEEETTTCBEESSCCSSCCCBSSSSST-TCCCCCCSEEEEEEETTTTEEEEEE
T ss_pred eeEEEEcCccccccCCccccccCCCCEEEEEeCCCcEEeCCcccCCcccccccc-ccCCCCCCEEEEEEEcCCCEEEEEE
Confidence 999999999998778888899999999999877788999876432334642111 2357889999999999999999999
Q ss_pred CCeeeeeeeeecCCCceEEEEEeecCCeEEEEEEccC
Q psy8037 196 DGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGG 232 (292)
Q Consensus 196 ng~~lg~aF~~~~~~~lyP~fs~~~~~~~v~l~~~~~ 232 (292)
|++.+|+||+++++++|||+|++.+++|+|+|+|.|+
T Consensus 181 ng~~lg~aF~~~~~~~LyP~~sl~~g~~~v~l~~~~~ 217 (217)
T 3emw_A 181 GGTYLGPAFRGLKGRTLYPAVSAVWGQCQVRIRYLGE 217 (217)
T ss_dssp TTEEEEEEECCCTTCCBEEEEEECSTTCEEEEEEEEC
T ss_pred CCeEeEEEEECCCCCEEEEEEEeccCCcEEEEEeCCC
Confidence 9999999999999999999999999999999999875
No 3
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=100.00 E-value=1.4e-42 Score=306.90 Aligned_cols=199 Identities=52% Similarity=0.984 Sum_probs=168.3
Q ss_pred CCCCChhhccCCCCCCccCccceeeccCCCCCcEEEccCCeEEEEeCCcccCcceEeeccCCcCCeEEEEEEEeeecCCc
Q psy8037 35 QRPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGT 114 (292)
Q Consensus 35 ~~~~~~~~L~~~~~~~~~~~~~~t~dp~~~~~~l~lS~d~~~~~~~~p~~~~~~~Vlg~~gfssGkhYWEV~V~~~~~~~ 114 (292)
..+.|++.|++|++..+..|.+++|||+++|++|.||+|++ ++++++..+++.+|||+++|++|+|||||+|.++..++
T Consensus 19 ~~~~~~~~l~~~p~~~~~~~~~~tLDp~ta~~~L~lSed~~-~v~~~~~~~~~~~Vlg~~~f~sGrhYWEV~V~~~~~~~ 97 (226)
T 2afj_A 19 SPPEGLEELLSAPPPDLVAQRHHGWNPKDCSENIDVKEGGL-CFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGT 97 (226)
T ss_dssp CCCSSSHHHHSSCCTTSSHHHHHSSCCSSSCCSSEEETTTT-EEECSSCTTTSSSEEECCCCCCSEEEEEEECCCCSSSC
T ss_pred CCccccceeccCCCCccccccccEEccccCCCCEEEeCCCE-EEEECCCCCCcCeEEECCCccCCEEEEEEEEeccCCCC
Confidence 56788999999999988889999999999999999997665 67777666667799999999999999999998744447
Q ss_pred eeEEEEeeccccCCcCCcccccCCCCCeEEEEEcCCeEEecCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEE
Q psy8037 115 HAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFV 194 (292)
Q Consensus 115 ~w~vGVa~~~~~l~~~g~~~~lG~~~~swg~~~~~g~~~h~~~~~~~~~y~~~~~~~~~~~~~d~IGV~LD~~~GtLsFy 194 (292)
.|.||||++++++++++....+|.+..+|+|...++.++|++....+..||... .++.+..+++|||+|||++|+||||
T Consensus 98 ~w~vGV~~~s~~~~r~~~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~-~~~~~~~~~rIGV~LD~e~G~lSFy 176 (226)
T 2afj_A 98 HAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGP-QGEQLVVPERLLVVLDMEEGTLGYS 176 (226)
T ss_dssp CCEEEEEESSCCCSSCSSSCCCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCS-GGGGSCCSSCEEEEEETTTTEEEEE
T ss_pred CEEEEecCCccccccccccccccCCCCcEEEEcCCCeEEECccccCcccccccc-cCCcCCCCCEEEEEEECCCCEEEEE
Confidence 899999999998777777788899999999987667788877533222354210 0234678999999999999999999
Q ss_pred ECCeeeeeeeeecCCCceEEEEEeecCCeEEEEEEccCCCc
Q psy8037 195 VDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLDL 235 (292)
Q Consensus 195 ~ng~~lg~aF~~~~~~~lyP~fs~~~~~~~v~l~~~~~~~~ 235 (292)
+|+++++++|+++++++|||+|++.+++|+|+|+|++++++
T Consensus 177 ~ng~~l~~aF~~~~~~~L~P~f~l~~g~~~v~l~~~~g~~~ 217 (226)
T 2afj_A 177 IGGTYLGPAFRGLKGRTLYPSVSAVWGQCQVRIRYMGERRV 217 (226)
T ss_dssp STTCSCSTTHHHHHHHCCEEEEEECCTTSCCEEEEESCCCC
T ss_pred ECCeEeEEEEEcCCCCEEEEEEEcccCCCEEEEEEcCCCCh
Confidence 99999999999988889999999988899999999999875
No 4
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=99.98 E-value=1.4e-31 Score=234.36 Aligned_cols=159 Identities=20% Similarity=0.332 Sum_probs=138.2
Q ss_pred ccceeeccCCCCCcEEEccCCeEEEEeCCcccCcceEeeccCCcCCeEEEEEEEeeecCCceeEEEEeeccccCCcCCcc
Q psy8037 54 QVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQ 133 (292)
Q Consensus 54 ~~~~t~dp~~~~~~l~lS~d~~~~~~~~p~~~~~~~Vlg~~gfssGkhYWEV~V~~~~~~~~w~vGVa~~~~~l~~~g~~ 133 (292)
...++|||++++++|.||+| +++++. ..++.+|||+.++++|+|||||+|...+.+++|.||||++.+++ .
T Consensus 10 ~~~v~ld~~d~~~~l~ls~d-~l~v~~---~~~~~~vra~~~v~~G~~YfEV~v~~~~~~~~~~iG~a~~~~~~-----~ 80 (213)
T 3toj_A 10 YERVLLALHDRAPQLKISDD-RLTVVG---EKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNL-----Q 80 (213)
T ss_dssp ECCCCEEEEEECTTSEECTT-SSEEEC---CSSCEEEEESCCBSSEEEEEEEEEEECCTTCEEEEEEECTTSCT-----T
T ss_pred CCeEEechhhCCCCEEEcCC-CcEEEe---CCceeEEEeCCCccCCeEEEEEEEeecCCCceEEEEeccCCccc-----c
Confidence 45689999999999999955 556764 35688999999999999999999988555578999999998875 3
Q ss_pred cccCCCCCeEEEEEcCCeEEecCccCCCcccCCcCCCCCCccCCCEEEEEEeCCC--------CEEEEEECCeeeeeeee
Q psy8037 134 SLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDE--------GTLSFVVDGQYLGVAFR 205 (292)
Q Consensus 134 ~~lG~~~~swg~~~~~g~~~h~~~~~~~~~y~~~~~~~~~~~~~d~IGV~LD~~~--------GtLsFy~ng~~lg~aF~ 205 (292)
..+|++..||+|+..+|+++|++.. ..| ++.+..+|+|||+||+++ |+|+||+||+.+|+||+
T Consensus 81 ~~~G~d~~S~gy~~~~G~~~h~~~~---~~y------g~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~ 151 (213)
T 3toj_A 81 APLGYDKFSYSWRSKKGTKFHQSIG---KHY------SSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYK 151 (213)
T ss_dssp SCTTSSTTEEEEETTTTCEEETTEE---ECC------SCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEE
T ss_pred cCCCCCCCcEEEECCCCeEEeCCcC---ccc------CCCCCCCCEEEEEEEcCCCccccCCccEEEEEeCCeeeeeeEE
Confidence 5799999999998778899998753 356 578899999999999998 79999999999999999
Q ss_pred ecCCCceEEEEEeecCCeEEEEEEcc
Q psy8037 206 GLKGRKLYPIVSAVWGHCEITMKYIG 231 (292)
Q Consensus 206 ~~~~~~lyP~fs~~~~~~~v~l~~~~ 231 (292)
+++.++|||+|++.. +++|++||..
T Consensus 152 ~~~~~~lyPavsl~~-~~~v~~NFG~ 176 (213)
T 3toj_A 152 DIFEGVYFPAISLYK-SCTVSINFGP 176 (213)
T ss_dssp SCCSSCBEEEEEEES-SCEEEEECSS
T ss_pred cCCCCcEEEEEEcCC-CCEEEEECCC
Confidence 998889999999965 7999999986
No 5
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=99.97 E-value=6.5e-32 Score=231.70 Aligned_cols=165 Identities=19% Similarity=0.305 Sum_probs=119.2
Q ss_pred ccceeeccCCCCCcEEEccCCeEEEEeCCcccCcceEeeccCCcCCeEEEEEEEeeecCCceeEEEEeeccccCCcCC--
Q psy8037 54 QVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVG-- 131 (292)
Q Consensus 54 ~~~~t~dp~~~~~~l~lS~d~~~~~~~~p~~~~~~~Vlg~~gfssGkhYWEV~V~~~~~~~~w~vGVa~~~~~l~~~g-- 131 (292)
+.++||||++||+ |+||+|+++ +... ...+|||+++|++|||||||+|.++ +.|.||||.+++.+++.+
T Consensus 11 ~v~vTLDp~TA~~-l~lSed~r~-Vr~~----~~~~VLG~~~ftsGrHYWEVeV~~~---~~W~vGV~~~~~~r~~~~~~ 81 (186)
T 3uv9_A 11 WVDVTLATNNISH-AVIAEDKRQ-VSSR----AGTGVLGSQSITSGKHYWEVDVSKK---SAWILGVCAGFQSDAMYNIE 81 (186)
T ss_dssp CCCCCCCCCSSCC-CEECTTSSC-EECC----CSSCEECSSCBCSSEEEEEEECTTC---SCEEEEEESCSTTTTTTTHH
T ss_pred EEEeEeCCCCcCC-ceECCCCCE-Eeec----CCCcCcCCCCCCCCCEEEEEEEcCC---CcEEEEEEEEEecccccccC
Confidence 3578999999995 999977764 4432 2468999999999999999999875 789999999887643322
Q ss_pred cccccCCCCCeEEEEEcCCe---EEecCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEE--CCeeeeeeeee
Q psy8037 132 YQSLVGSNDQSWGWDLGRNR---LYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVV--DGQYLGVAFRG 206 (292)
Q Consensus 132 ~~~~lG~~~~swg~~~~~g~---~~h~~~~~~~~~y~~~~~~~~~~~~~d~IGV~LD~~~GtLsFy~--ng~~lg~aF~~ 206 (292)
....+|.+.++|++.+.++. ++|++...... -+.. .+......|+||||+||||+|+||||. +...+.++|+.
T Consensus 82 ~~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~~~~-~~~~-~~l~~~~~p~rVGVfLDye~G~lSFYnv~d~~~lI~tF~~ 159 (186)
T 3uv9_A 82 QNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPF-APFI-VPLSVIICPDRVGVFVDYEACTVSFFNITNHGFLIYKFSQ 159 (186)
T ss_dssp HHTCCCGGGTEEEEEEETTTEEEEEECCCTTSTT-SCEE-EECCCSSCCSEEEEEEETTTTEEEEEETTTTTEEEEEECS
T ss_pred CCcccCCCCCEEEEEECCCCEEEEEeCCCccccC-CCcc-CcccccccCCEEEEEeecCCCEEEEEeCCCCceEEEEeCC
Confidence 13457778899999876553 56765432100 0000 001234678999999999999999995 22457789975
Q ss_pred -cCCCceEEEEEeecCCeEEEEEEcc
Q psy8037 207 -LKGRKLYPIVSAVWGHCEITMKYIG 231 (292)
Q Consensus 207 -~~~~~lyP~fs~~~~~~~v~l~~~~ 231 (292)
-|+++|||+|++. .+..+|+.|.
T Consensus 160 ~~Fs~pL~P~F~~~--~~~~plticp 183 (186)
T 3uv9_A 160 CSFSKPVFPYLNPR--KCTVPMTLCS 183 (186)
T ss_dssp CCCSSCBEEEEECT--TCCSCCEECC
T ss_pred cCCCCCEEeEEECC--CCCceEEEeC
Confidence 4889999999993 4455666653
No 6
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=99.97 E-value=8.7e-31 Score=224.85 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=114.2
Q ss_pred ccceeeccCCCCCcEEEccCCeEEEEeC---------Ccc-cCcceEeeccCCcCCeEEEEEEEeeecCCceeEEEEeec
Q psy8037 54 QVKHAWNPEDRSLNIFVKDDDKLTFHRH---------PVA-QSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTI 123 (292)
Q Consensus 54 ~~~~t~dp~~~~~~l~lS~d~~~~~~~~---------p~~-~~~~~Vlg~~gfssGkhYWEV~V~~~~~~~~w~vGVa~~ 123 (292)
..+++|||++||++|.||+|++. +... |.+ ..+.+|||+++|+||||||||+|.++ +.|.||||++
T Consensus 8 ~~~vtLDp~TA~~~L~lSed~~~-v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~~---~~w~vGV~~~ 83 (188)
T 2vok_A 8 MVHITLDRNTANSWLIISKDRRQ-VRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQK---EAWDLGVCRD 83 (188)
T ss_dssp BCCCCBCGGGSCTTEEECTTSCE-EEECSSCCCCCCCTTSCCSSSEEEBSCCBSSSEEEEEEECTTC---SCEEEEEEET
T ss_pred ccceEECCccCCCCeEECCCCCE-EEECCccCCCCCCccceeeeccccccCcccCCCeEEEEEecCC---ceEEEEEeeC
Confidence 46789999999999999977664 4322 112 23569999999999999999999875 6899999999
Q ss_pred cccCCcCCcccccCCCCCeEEEEEcCCe--EEecCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEEC-Ce-e
Q psy8037 124 DAPLHSVGYQSLVGSNDQSWGWDLGRNR--LYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVD-GQ-Y 199 (292)
Q Consensus 124 ~~~l~~~g~~~~lG~~~~swg~~~~~g~--~~h~~~~~~~~~y~~~~~~~~~~~~~d~IGV~LD~~~GtLsFy~n-g~-~ 199 (292)
+++ |++.. .+|.+..+|++.+.++. ++|+.. ... ....++.||||+||||+|+||||.. .. .
T Consensus 84 si~--Rkg~~-~~~~~~~~W~l~~~~~~y~~~~~~~----~~l-------~~~~~~~rVGVfLDye~G~lSFY~v~~~~~ 149 (188)
T 2vok_A 84 SVQ--RKGQF-SLSPENGFWTIWLWQDSYEAGTSPQ----TTL-------HIQVPPCQIGIFVDYEAGVVSFYNITDHGS 149 (188)
T ss_dssp TCC--CSSCC-CCSTTTTEEEEEEETTEEEECSSSC----EEE-------CCSSCCSEEEEEEETTTTEEEEEETTTTTE
T ss_pred CcC--CCCcc-ccCCCCCEEEEEEECCEEEEEeCCc----cCE-------ecCCCCCEEEEEEEcCCCEEEEEECCCCCe
Confidence 987 45533 57788899999876554 334321 112 1235689999999999999999963 23 6
Q ss_pred eeeeeee-cCCCceEEEEEee
Q psy8037 200 LGVAFRG-LKGRKLYPIVSAV 219 (292)
Q Consensus 200 lg~aF~~-~~~~~lyP~fs~~ 219 (292)
+.++|+. .|+++|||+|++.
T Consensus 150 ~I~tF~~~~Fs~pL~P~F~~~ 170 (188)
T 2vok_A 150 LIYTFSECVFAGPLRPFFNVG 170 (188)
T ss_dssp EEEEECSCCCCSCEEEEEECC
T ss_pred eeEEecCCCCCCCEEeEEEec
Confidence 6799998 6999999999984
No 7
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=99.97 E-value=3.6e-30 Score=223.22 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=117.3
Q ss_pred ccceeeccCCCCCcEEEccCCeEEEEeCC---------cc-cCcceEeeccCCcCCeEEEEEEEeeecCCceeEEEEeec
Q psy8037 54 QVKHAWNPEDRSLNIFVKDDDKLTFHRHP---------VA-QSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTI 123 (292)
Q Consensus 54 ~~~~t~dp~~~~~~l~lS~d~~~~~~~~p---------~~-~~~~~Vlg~~gfssGkhYWEV~V~~~~~~~~w~vGVa~~ 123 (292)
+..++|||++||++|.||+|++. +.... .+ ..+.+|||+++|+||||||||+|.++ +.|.||||++
T Consensus 9 ~~~~tLDp~TA~~~L~lSed~~~-v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~~---~~w~vGV~~~ 84 (201)
T 2fbe_A 9 QVDMTFDVDTANNYLIISEDLRS-FRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTS---QVWDVGVCKE 84 (201)
T ss_dssp BCCCCEETTTCCTTEEECTTSSE-EEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECTTC---SEEEEEEEET
T ss_pred EEeEEECcccCCCceEECCCCcE-EEECCccCCCCCCccceeeccceecCccccCCceEEEEEeCCC---CEEEEEEeeC
Confidence 46789999999999999977764 43321 11 23569999999999999999999875 7899999999
Q ss_pred cccCCcCCcccccCCCCCeEEEEEcCCeEE--ecCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEEC-Ceee
Q psy8037 124 DAPLHSVGYQSLVGSNDQSWGWDLGRNRLY--HDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVD-GQYL 200 (292)
Q Consensus 124 ~~~l~~~g~~~~lG~~~~swg~~~~~g~~~--h~~~~~~~~~y~~~~~~~~~~~~~d~IGV~LD~~~GtLsFy~n-g~~l 200 (292)
++. |++.. .++.+..+|++.+.++..+ +.... ... .....+.||||+||||+|+||||.. ...+
T Consensus 85 si~--Rkg~~-~~~~~~g~W~l~~~~~~~y~~~~~~~---~~l-------~~~~~~~rVGVfLDye~G~lSFY~v~~~~~ 151 (201)
T 2fbe_A 85 SVN--RQGKI-ELSSEHGFLTVGCREGKVFAASTVPM---TPL-------WVSPQLHRVGIFLDVGMRSIAFYNVSDGCH 151 (201)
T ss_dssp TSC--CSSCC-CCCTTTTEEEEEEETTTEEEECSSSC---EEE-------CCCTTCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ccC--CCCcc-cccCCCCEEEEEEeCCCEEEEEcCCc---ccC-------ccCCCCCEEEEEEEcCCCEEEEEeCCCCce
Confidence 987 45543 3566778999987644222 11111 111 1335689999999999999999962 3466
Q ss_pred eeeeee-cCCCceEEEEEeec--CCeEEEEEEcc
Q psy8037 201 GVAFRG-LKGRKLYPIVSAVW--GHCEITMKYIG 231 (292)
Q Consensus 201 g~aF~~-~~~~~lyP~fs~~~--~~~~v~l~~~~ 231 (292)
.++|+. .|+++|||+|++.. +++..+|+.+.
T Consensus 152 i~tF~~~~Fs~pL~P~F~~~~~~~~~~~~l~ic~ 185 (201)
T 2fbe_A 152 IYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICS 185 (201)
T ss_dssp EEEECSCCCSSCEEEEEEEECSSSSCCCCEEECC
T ss_pred eEEEcCCCCCCCEEeEEEecccCCCCCCCEEEeC
Confidence 789998 59999999999952 22223566553
No 8
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=99.97 E-value=3.3e-30 Score=221.94 Aligned_cols=148 Identities=19% Similarity=0.190 Sum_probs=111.9
Q ss_pred ccceeeccCCCCCcEEEccCCeEEEEeCC---------cc-cCcceEeeccCCcCCeEEEEEEEeeecCCceeEEEEeec
Q psy8037 54 QVKHAWNPEDRSLNIFVKDDDKLTFHRHP---------VA-QSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTI 123 (292)
Q Consensus 54 ~~~~t~dp~~~~~~l~lS~d~~~~~~~~p---------~~-~~~~~Vlg~~gfssGkhYWEV~V~~~~~~~~w~vGVa~~ 123 (292)
+..++|||++||++|.||+|++. +.... .+ ..+.+|||+++|+||||||||+|.++ +.|.||||++
T Consensus 12 ~~~~tLDp~TA~~~L~lSed~~~-v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrHYWEVev~~~---~~w~vGV~~~ 87 (191)
T 2wl1_A 12 AVNVILDAETAYPNLIFSDDLKS-VRLGNKWERLPDGPQRFDSCIIVLGSPSFLSGRRYWEVEVGDK---TAWILGACKT 87 (191)
T ss_dssp BCCCEECTTTSCTTEEECTTSCE-EEECCTTCCCCCCTTSCSSSCCEEEECCBCSSEEEEEEECTTC---SCEEEEEEET
T ss_pred eeeeEECCccCCCceEECCCCcE-EEECCcCCCCCCCcccccccccccCcccccCCCEEEEEEeCCC---CEEEEEEeeC
Confidence 35789999999999999977664 43321 11 23568999999999999999999875 6899999999
Q ss_pred cccCCcCCcccccCCCCCeEEEEEcC-Ce--EEecCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEEC-Cee
Q psy8037 124 DAPLHSVGYQSLVGSNDQSWGWDLGR-NR--LYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVD-GQY 199 (292)
Q Consensus 124 ~~~l~~~g~~~~lG~~~~swg~~~~~-g~--~~h~~~~~~~~~y~~~~~~~~~~~~~d~IGV~LD~~~GtLsFy~n-g~~ 199 (292)
++. |++.. .++.+..+|++.+.+ +. ++|+.. ... ....++.||||+||||+|+||||.. ...
T Consensus 88 s~~--Rkg~~-~~~~~~~~W~l~~~~~~~y~~~~~~~----~~l-------~~~~~~~rVGVfLDye~G~lSFY~v~~~~ 153 (191)
T 2wl1_A 88 SIS--RKGNM-TLSPENGYWVVIMMKENEYQASSVPP----TRL-------LIKEPPKRVGIFVDYRVGSISFYNVTARS 153 (191)
T ss_dssp TCC--SSSCC-CCCGGGTEEEEEEEETTEEEECCSSC----EEC-------CCSSCCSEEEEEEETTTTEEEEEETTTTE
T ss_pred CcC--CCCcc-ccCCCCCEEEEEEeCCCEEEEEcCCC----ccC-------ccccCCcEEEEEEEcCCCEEEEEECCCCc
Confidence 987 45533 467777899987642 33 233321 111 1235689999999999999999962 335
Q ss_pred eeeeeee-cCCCceEEEEEee
Q psy8037 200 LGVAFRG-LKGRKLYPIVSAV 219 (292)
Q Consensus 200 lg~aF~~-~~~~~lyP~fs~~ 219 (292)
+.++|+. .|+++|||+|++.
T Consensus 154 ~i~tF~~~~Fs~pl~P~F~~~ 174 (191)
T 2wl1_A 154 HIYTFASCSFSGPLQPIFSPG 174 (191)
T ss_dssp EEEEECCCCCCSCEEEEEECC
T ss_pred ceEEeCCCCCCCCEEeEEEcc
Confidence 6789997 6999999999984
No 9
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=218.17 Aligned_cols=151 Identities=18% Similarity=0.294 Sum_probs=112.3
Q ss_pred ccceeeccCCCCCcEEEccCCeEEEEeCC----------cc-cCcceEeeccCCcCCeEEEEEEEeeecCCceeEEEEee
Q psy8037 54 QVKHAWNPEDRSLNIFVKDDDKLTFHRHP----------VA-QSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGT 122 (292)
Q Consensus 54 ~~~~t~dp~~~~~~l~lS~d~~~~~~~~p----------~~-~~~~~Vlg~~gfssGkhYWEV~V~~~~~~~~w~vGVa~ 122 (292)
+..++|||++||++|.||+|++. +.... .+ ..+.+|||+++|++|||||||+|.++ +.|.||||+
T Consensus 11 ~~~vtLDp~TA~~~L~lSed~~~-v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrhYWEVev~~~---~~W~lGV~~ 86 (193)
T 3kb5_A 11 LEELTFDPSSAHPSLVVSSSGRR-VECSEQKAPPAGEDPRQFDKAVAVVAHQQLSEGEHYWEVDVGDK---PRWALGVIA 86 (193)
T ss_dssp BCCCCBCTTTSCTTEEEETTTTE-EEECCSCCCCCCSCTTSCSSSCEEEBSCCBCSSEEEEEEECTTC---SSEEEEEEE
T ss_pred cccEEECCCCCCCCEEECCCCCE-EEECCcCCCCCCCCccccccccEEccCCcccCCCEEEEEEeCcC---ceEEEEEee
Confidence 46789999999999999977774 33221 11 13569999999999999999999875 689999999
Q ss_pred ccccCCcCCcccccCCCCCeEEEEEcCCe---EEecCccCCCcccCCcCCCCCC-ccCCCEEEEEEeCCCCEEEEEECC-
Q psy8037 123 IDAPLHSVGYQSLVGSNDQSWGWDLGRNR---LYHDSKNNTGLTYPTLLKPDET-FVVPDKFLVILDMDEGTLSFVVDG- 197 (292)
Q Consensus 123 ~~~~l~~~g~~~~lG~~~~swg~~~~~g~---~~h~~~~~~~~~y~~~~~~~~~-~~~~d~IGV~LD~~~GtLsFy~ng- 197 (292)
+++. |++... .+.+..+|++.+.++. ++|+.... ... .. ...+.||||+|||++|+||||.-.
T Consensus 87 ~s~~--Rkg~~~-~~~~~~~W~l~~~~~~~y~~~~~~~~~--~~l-------~~~~~~~~rVGVfLDye~G~lSFY~v~~ 154 (193)
T 3kb5_A 87 AEAP--RRGRLH-AVPSQGLWLLGLREGKILEAHVEAKEP--RAL-------RSPERRPTRIGLYLSFGDGVLSFYDASD 154 (193)
T ss_dssp TTSC--CSSSCC-CSGGGTEEEEEEETTTEEEECCSSSSC--EEC-------CCCSSCCSEEEEEEETTTTEEEEEECCS
T ss_pred CCcC--cCCCcC-CCCCCCEEEEEEeCCCEEEEEeCCCcc--EEE-------eecCCCCCEEEEEEEcCCCEEEEEeCCC
Confidence 9987 455443 3446679998876553 23332110 001 12 356899999999999999999522
Q ss_pred ---eeeeeeeeecCCCceEEEEEeec
Q psy8037 198 ---QYLGVAFRGLKGRKLYPIVSAVW 220 (292)
Q Consensus 198 ---~~lg~aF~~~~~~~lyP~fs~~~ 220 (292)
..+.++|+..|+++|||+|++++
T Consensus 155 ~~~~s~I~tF~~~Ft~pl~P~F~~~~ 180 (193)
T 3kb5_A 155 ADALVPLFAFHERLPRPVYPFFDVCW 180 (193)
T ss_dssp TTCCEEEEEECSCCCSCEEEEEECCC
T ss_pred CCCceEEEEeCCCCCCCeECEEEccc
Confidence 46779999889999999999854
No 10
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=99.96 E-value=4.5e-29 Score=248.71 Aligned_cols=187 Identities=19% Similarity=0.281 Sum_probs=123.2
Q ss_pred CCCCChhhccCCCCC-Cc--cC---ccceeeccCCCCCcEEEccCCeEEEEeC-------C---------cc-cCcceEe
Q psy8037 35 QRPGRLDIILDMPPA-SR--ET---QVKHAWNPEDRSLNIFVKDDDKLTFHRH-------P---------VA-QSTDCIR 91 (292)
Q Consensus 35 ~~~~~~~~L~~~~~~-~~--~~---~~~~t~dp~~~~~~l~lS~d~~~~~~~~-------p---------~~-~~~~~Vl 91 (292)
+...++.+|..|+++ ++ .+ ++.+||||+++| +|+||+|+|+..+.. | .+ ..+.+||
T Consensus 384 ~~i~~a~~~~~~~~~~~~~~~~~~~~v~vtldp~ta~-~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~~~~VL 462 (602)
T 4b3n_A 384 RRVFRAPDLKGMLDMFRELTDARRYWVDVTLATNNIS-HAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNYCTGVL 462 (602)
T ss_dssp TCCCC-------CCSCHHHHHHHTTBCCCCEECCSCC-SCEECTTSSEEECCCC--------------------CCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheEEEEEeCCCCCC-ceeEecCCCEEEECCccccccCCCccCCCCCcccCCCCCEec
Confidence 577889999999999 66 22 468899999999 588998877643211 1 11 2356899
Q ss_pred eccCCcCCeEEEEEEEeeecCCceeEEEEeeccccCCc---CCcccccCCCCCeEEEEEcCCe---EEecCccCCCcccC
Q psy8037 92 GRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHS---VGYQSLVGSNDQSWGWDLGRNR---LYHDSKNNTGLTYP 165 (292)
Q Consensus 92 g~~gfssGkhYWEV~V~~~~~~~~w~vGVa~~~~~l~~---~g~~~~lG~~~~swg~~~~~g~---~~h~~~~~~~~~y~ 165 (292)
|+++|+||||||||+|.++ +.|.||||+....+.+ ++. ..++.+.++|++++.++. .+|+...... ..|
T Consensus 463 g~~~f~sGrhyWEV~v~~~---~~w~~Gv~~~~~~~~~~~~~~~-~~~~~~~g~w~~~~~~~~~y~~~~~~~~~~~-~~~ 537 (602)
T 4b3n_A 463 GSQSITSGKHYWEVDVSKK---SAWILGVCAGFQSDAMYNIEQN-ENYQPKYGYWVIGLQEGVKYSVFQDGSSHTP-FAP 537 (602)
T ss_dssp ESSCBSSSEEEEEEECTTC---SCEEEEEECCCCTTTSSTHHHH-CCCCGGGTEEEEEEETTTEEEEEECCCSSCC-SSC
T ss_pred cCCCCCCEEEEEEEEECCC---eeEEEEEeeccccccccccCCC-cccCCCCcEEEEEEecCCeEEEEeCCCcccc-cCC
Confidence 9999999999999999875 7899999987654322 222 234556689999876553 4565532110 000
Q ss_pred CcCCCCCCccCCCEEEEEEeCCCCEEEEEEC-C-eeeeeeeee-cCCCceEEEEEeecCCeEEEEEEc
Q psy8037 166 TLLKPDETFVVPDKFLVILDMDEGTLSFVVD-G-QYLGVAFRG-LKGRKLYPIVSAVWGHCEITMKYI 230 (292)
Q Consensus 166 ~~~~~~~~~~~~d~IGV~LD~~~GtLsFy~n-g-~~lg~aF~~-~~~~~lyP~fs~~~~~~~v~l~~~ 230 (292)
... +.....+|.||||||||++|+||||.- . ..|.++|+. .|+++|||+|++. .+..+|+.|
T Consensus 538 ~~~-~l~~~~~~~rvgv~ld~~~g~~sFy~~~~~~~~i~tf~~~~f~~~l~P~f~~~--~~~~~l~iC 602 (602)
T 4b3n_A 538 FIV-PLSVIICPDRVGVFVDYEACTVSFFNITNHGFLIYKFSQCSFSKPVFPYLNPR--KCTVPMTLC 602 (602)
T ss_dssp EEE-ECCCSSCCSEEEEEEETTTTEEEEEETTTTTEEEEEECSCCCCSCBEEEEECT--TCSSCEEEC
T ss_pred ccc-ccccCCCCCEEEEEEecCCCEEEEEeCCCCceeeEeCCCcCCCCCEeCeEECC--CCCCceEeC
Confidence 000 012346789999999999999999952 2 356799986 5899999999994 344556654
No 11
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=99.96 E-value=5.9e-28 Score=204.47 Aligned_cols=157 Identities=17% Similarity=0.217 Sum_probs=132.7
Q ss_pred cCCCCCcEEEccCCeEEEEeCCcccCcceEeeccCCcCCeEEEEEEEeeecCCceeEEEEeeccccCCcCCcccccCCCC
Q psy8037 61 PEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSND 140 (292)
Q Consensus 61 p~~~~~~l~lS~d~~~~~~~~p~~~~~~~Vlg~~gfssGkhYWEV~V~~~~~~~~w~vGVa~~~~~l~~~g~~~~lG~~~ 140 (292)
+++++..|.++ +++++++.+ .+.+.+||++.++.+|+|||||+|.....++.+.||++++.+++ ..++|++.
T Consensus 4 ~~dr~~~l~~~-~d~l~~~~~--~~~~~~vra~~p~~~g~~YfEv~i~~~~~~~~~~IG~a~~~~~~-----~~~~G~d~ 75 (171)
T 2yyo_A 4 GSSGFKHILVD-GDTLSYHGN--SGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSL-----DHQPGWLP 75 (171)
T ss_dssp --CEEESEEEE-TTEEEECCC--SSCCEEEECSSCCCSSSCEEEEEEEEETTTCCCEEEEECTTCCT-----TSCTTSST
T ss_pred cccCcceEEEc-CCEEEEeCC--CCceeEEEECCCCCCCCEEEEEEEEECCCCcEEEEEecCCCCCC-----ccCCCccC
Confidence 46777889997 678777654 34688999999999999999999998766678999999998875 35789999
Q ss_pred CeEEEEEcCCeEEecCccCCCcccCCcCCCCCCccCCCEEEEEEeCC-----CCEEEEEECCeeeeeeeeecCCCceEEE
Q psy8037 141 QSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMD-----EGTLSFVVDGQYLGVAFRGLKGRKLYPI 215 (292)
Q Consensus 141 ~swg~~~~~g~~~h~~~~~~~~~y~~~~~~~~~~~~~d~IGV~LD~~-----~GtLsFy~ng~~lg~aF~~~~~~~lyP~ 215 (292)
.||+|+..+|+++|+... +..| ++.+..+|+|||.||++ .++|+|++||+.+|.||+++...+|||+
T Consensus 76 ~S~gy~~~dG~~~~~~~~--~~~y------g~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~~~~~~lyPa 147 (171)
T 2yyo_A 76 DSVAYHADDGKLYNGRAK--GRQF------GSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMSPDGLFPA 147 (171)
T ss_dssp TCEEEETTTCCEESSSSC--CBCC------SCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEESSCSSSCEEE
T ss_pred CEEEEEcCCCeEEeCCCC--CCcC------CCCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecCCcCCCEEEE
Confidence 999999878999987532 3456 67899999999999998 4999999999999999999987799999
Q ss_pred EEeecCCeEEEEEEccCC
Q psy8037 216 VSAVWGHCEITMKYIGGL 233 (292)
Q Consensus 216 fs~~~~~~~v~l~~~~~~ 233 (292)
|++...+++|++||...+
T Consensus 148 V~l~~~g~~v~vNFG~~~ 165 (171)
T 2yyo_A 148 VGMHSLGEEVRLHLNAEL 165 (171)
T ss_dssp EEECSTTEEEEEETTCCC
T ss_pred EEEecCCCEEEEECCCCC
Confidence 999766899999997654
No 12
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=98.75 E-value=6.7e-09 Score=90.52 Aligned_cols=50 Identities=62% Similarity=1.308 Sum_probs=48.3
Q ss_pred cccCCCceeEEeeCCeeeeeecCCCcCccccceeeeeeeeeeEEEEEecC
Q psy8037 236 ILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGG 285 (292)
Q Consensus 236 ~ld~~~~~l~f~~~~~~l~~af~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (292)
.||++.++|+|..++.++++||+++.+++|||++|.+||+|||+|+|+|+
T Consensus 168 ~LD~~~G~LsFy~ng~~lg~aF~~~~~~~LyP~~sl~~g~~~v~l~~~~~ 217 (217)
T 3emw_A 168 VLDMEEGTLGYAIGGTYLGPAFRGLKGRTLYPAVSAVWGQCQVRIRYLGE 217 (217)
T ss_dssp EEETTTTEEEEEETTEEEEEEECCCTTCCBEEEEEECSTTCEEEEEEEEC
T ss_pred EEEcCCCEEEEEECCeEeEEEEECCCCCEEEEEEEeccCCcEEEEEeCCC
Confidence 48999999999999999999999999999999999999999999999996
No 13
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=98.75 E-value=6e-09 Score=90.32 Aligned_cols=54 Identities=80% Similarity=1.513 Sum_probs=50.4
Q ss_pred cccCCCceeEEeeCCeeeeeecCCCcCccccceeeeeeeeeeEEEEEecCCCCC
Q psy8037 236 ILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLDPQ 289 (292)
Q Consensus 236 ~ld~~~~~l~f~~~~~~l~~af~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 289 (292)
.||++.++|+|...+.+++.+|+++++++|||.+|..||+|+|+|.|+|+||||
T Consensus 159 ~LD~e~G~lsFy~ng~~l~~aF~~~~~~~l~P~f~l~~g~~~v~l~~~~~~~~~ 212 (212)
T 2jk9_A 159 ALDMDDGTLSFIVDGQYMGVAFRGLKGKKLYPVVSAVWGHCEIRMRYLNGLDPE 212 (212)
T ss_dssp EEETTTTEEEEEETTEEEEEEECCCTTCCBEEEEEECCTTCEEEEEEEEEEC--
T ss_pred EEECCCCEEEEEECCEEeEEEeccCCCCEEeeEEEEEcCCcEEEEEECCCcCCC
Confidence 489999999999999999999999999999999999999999999999999996
No 14
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=98.34 E-value=8.2e-08 Score=84.01 Aligned_cols=56 Identities=55% Similarity=1.139 Sum_probs=53.3
Q ss_pred cccCCCceeEEeeCCeeeeeecCCCcCccccceeeeeeeeeeEEEEEecCCCCCCC
Q psy8037 236 ILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLDPQSE 291 (292)
Q Consensus 236 ~ld~~~~~l~f~~~~~~l~~af~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (292)
.||++.++|+|...+.+++.+|+++.+++|||.+|..||+|+|+|.|+|+++|++.
T Consensus 165 ~LD~e~G~lSFy~ng~~l~~aF~~~~~~~L~P~f~l~~g~~~v~l~~~~g~~~~~l 220 (226)
T 2afj_A 165 VLDMEEGTLGYSIGGTYLGPAFRGLKGRTLYPSVSAVWGQCQVRIRYMGERRVEET 220 (226)
T ss_dssp EEETTTTEEEEESTTCSCSTTHHHHHHHCCEEEEEECCTTSCCEEEEESCCCCSSS
T ss_pred EEECCCCEEEEEECCeEeEEEEEcCCCCEEEEEEEcccCCCEEEEEEcCCCChhhh
Confidence 48999999999999999999999999899999999999999999999999999985
No 15
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=0.00013 Score=60.88 Aligned_cols=153 Identities=19% Similarity=0.235 Sum_probs=95.9
Q ss_pred eeeccCCCCCcEEEccCCeEEEEeC-Cc-ccCcceEeeccCCcCCeEEEEEEEeeecC--CceeEEEEeecc-ccCCcCC
Q psy8037 57 HAWNPEDRSLNIFVKDDDKLTFHRH-PV-AQSTDCIRGRVGFTKGFHIWEVHWSARQR--GTHAVVGVGTID-APLHSVG 131 (292)
Q Consensus 57 ~t~dp~~~~~~l~lS~d~~~~~~~~-p~-~~~~~~Vlg~~gfssGkhYWEV~V~~~~~--~~~w~vGVa~~~-~~l~~~g 131 (292)
.+|-+ ....++.|+++ +.+..+. |. .....-|.++.++..|.- |+|++.+... ..+..+||.+-+ ..++--.
T Consensus 7 l~FH~-~hG~nI~L~~~-~~~A~R~~~~~~f~~givFS~rPl~~~E~-~~v~I~~~~~~wsG~l~~GvT~~dP~~l~lP~ 83 (170)
T 2e63_A 7 GELHP-RTGRLVSLSAC-GRTARRQQPGQEFNHGLVLSREPLRDGRV-FTVRIDRKVNSWSGSIEIGVTALDPSVLDFPS 83 (170)
T ss_dssp SCCCS-CCCSSEEECSS-SCEEEESCTTTCSCSCCEEEEEEECTTCE-EEEEEEEECCSSCCCCEEEEESSCTTSCCCCS
T ss_pred ccccc-ccCCCeEECCC-CeEEEeCCCCcccCceEEEECCCCCCCCE-EEEEEEeecCCcceeEEEEEEccChhhccCCC
Confidence 34545 45689999955 4456554 22 234567889999988863 6777765432 235799999853 2221001
Q ss_pred cccccCCCCCeEEEEEcCCeEEecCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEECCeeeeeeeeecCCCc
Q psy8037 132 YQSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRGLKGRK 211 (292)
Q Consensus 132 ~~~~lG~~~~swg~~~~~g~~~h~~~~~~~~~y~~~~~~~~~~~~~d~IGV~LD~~~GtLsFy~ng~~lg~aF~~~~~~~ 211 (292)
....+ ..++|.+.. ..+.++++.. ...|..- ......+|+||+.++ .+|+|.|+.||...|.+++++. .+
T Consensus 84 ~~~~L--~~~~Wv~~~--~~v~~ng~~~-~e~~~~~---l~~l~~Gd~ig~~~~-~~G~l~~~iNg~~~g~~~~~ip-~~ 153 (170)
T 2e63_A 84 SATGL--KGGSWVVSG--CSVLRDGRSV-LEEYGQD---LDQLGEGDRVGVERT-VAGELRLWVNGRDCGVAATGLP-PR 153 (170)
T ss_dssp SGGGC--CSSEEEESS--SEEEESSCEE-EESCSSC---GGGCCSSCCEEEEEC-TTSCEEEEESSCEEEEEECCCC-SC
T ss_pred ChhhC--CCCeEEEec--cccccCCccc-chhcccc---ccccCCCCEEEEEEc-CCcEEEEEECCccceeeEcCCC-Cc
Confidence 11112 346888642 2344444321 1234210 113468999999998 5699999999999999999876 59
Q ss_pred eEEEEEeecCCe
Q psy8037 212 LYPIVSAVWGHC 223 (292)
Q Consensus 212 lyP~fs~~~~~~ 223 (292)
||..|.+ +|.|
T Consensus 154 LwavvDv-yG~t 164 (170)
T 2e63_A 154 VWAVVDL-YGKC 164 (170)
T ss_dssp EEEEEEC-CTTE
T ss_pred EEEEEEc-cCCE
Confidence 9999999 5554
No 16
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=97.61 E-value=0.0029 Score=52.53 Aligned_cols=143 Identities=12% Similarity=0.122 Sum_probs=89.5
Q ss_pred eeeccCCCCCcEEEccCCeEEEEeCCcccCcceEeeccCCcCCeEEEEEEEeeec--CCceeEEEEeecc-ccCCcCCc-
Q psy8037 57 HAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQ--RGTHAVVGVGTID-APLHSVGY- 132 (292)
Q Consensus 57 ~t~dp~~~~~~l~lS~d~~~~~~~~p~~~~~~~Vlg~~gfssGkhYWEV~V~~~~--~~~~w~vGVa~~~-~~l~~~g~- 132 (292)
++|-+ ....++.|++ ++.++.+. ...+..-|.++.++..|.- ++|++.+.. ......+||.+-+ ..++. ..
T Consensus 9 l~FH~-~~G~nI~L~~-~~~~A~R~-~sf~~givFS~RPl~~~E~-~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~-~lP 83 (168)
T 2yue_A 9 LQFHS-VHGDNIRISR-DGTLARRF-ESFCRAITFSARPVRINER-ICVKFAEISNNWNGGIRFGFTSNDPVTLEG-TLP 83 (168)
T ss_dssp CCEEE-EECTTEEECC-SSCCEEEC-SCSSCCEEEESSCCCSSCC-EEEEEEECCSSSSSCCEEEEESSCGGGTTT-CCC
T ss_pred ccccc-ccCCCeEECC-CCcEEEec-ccCCceEEEECCCCcCCCE-EEEEEEeecCCcceeEEEeeeecCHHHcCC-CCC
Confidence 34444 4568999994 45456654 2345568899999988854 567765432 2235799999753 22210 00
Q ss_pred --c-cccCCCCCeEEEEEcCCeEEecCccCCCcccCCcCCCCCCccCCCEEEEEEeCCCCEEEEEECCeeeeeeeeecC-
Q psy8037 133 --Q-SLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRGLK- 208 (292)
Q Consensus 133 --~-~~lG~~~~swg~~~~~g~~~h~~~~~~~~~y~~~~~~~~~~~~~d~IGV~LD~~~GtLsFy~ng~~lg~aF~~~~- 208 (292)
. ..+-.....|...+. ..| ...+++|++.+| .+|+|.|+.||...|..++++.
T Consensus 84 ~~a~~dL~~~~~~W~~~l~-------------~~~---------~~~g~~l~f~v~-~~G~l~~~iNg~~~g~~~~~V~~ 140 (168)
T 2yue_A 84 KYACPDLTNRPGFWAKALH-------------EQY---------CEKDNILYYYVN-GAGDVIYGINNEEKGVILTGIDT 140 (168)
T ss_dssp SSSSSHHHHSTTBCCEECC-------------STT---------CCSSCEEEEEEC-TTSEEEEEESSCEEEEEEECCCC
T ss_pred CcCchHHhcCCCEEEEEec-------------ccc---------ccCCCEEEEEEc-CCCEEEEEECCCccEEEEcCCCC
Confidence 0 001111245643211 012 145799999997 7899999999999999998885
Q ss_pred CCceEEEEEeecCCeEEEE
Q psy8037 209 GRKLYPIVSAVWGHCEITM 227 (292)
Q Consensus 209 ~~~lyP~fs~~~~~~~v~l 227 (292)
+++||..|.++..-..|++
T Consensus 141 ~~pLwavvDvyG~t~~V~i 159 (168)
T 2yue_A 141 RSLLWTVIDIYGNCTGIEF 159 (168)
T ss_dssp SSCCEEEEECCSSCSEEEE
T ss_pred CCceEEEEEccCCeEEEEE
Confidence 5799999999432334443
No 17
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=96.33 E-value=0.003 Score=52.46 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=38.8
Q ss_pred CceeEEeeCCeeeeeecCCCcCccccceeeeeeeeeeEEEEE
Q psy8037 241 EGTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKY 282 (292)
Q Consensus 241 ~~~l~f~~~~~~l~~af~~l~~~~l~~~~~~~~~~~~~~~~~ 282 (292)
..++.|.+++.+|++||.+++...|||+|+....+++|++-+
T Consensus 120 ~~~i~Ft~NG~~lg~af~~~~~~~lyPaV~l~~~g~~v~vNF 161 (171)
T 2yyo_A 120 TAQIFFTKNGKRVGSTIMPMSPDGLFPAVGMHSLGEEVRLHL 161 (171)
T ss_dssp CEEEEEEETTEEEEEEEESSCSSSCEEEEEECSTTEEEEEET
T ss_pred cEEEEEEECCEEcCceecCCcCCCEEEEEEEecCCCEEEEEC
Confidence 589999999999999999999889999999988789998865
No 18
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=95.27 E-value=0.016 Score=49.73 Aligned_cols=40 Identities=20% Similarity=0.515 Sum_probs=35.4
Q ss_pred ceeEEeeCCeeeeeecCCCcCccccceeeeeeeeeeEEEEE
Q psy8037 242 GTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKY 282 (292)
Q Consensus 242 ~~l~f~~~~~~l~~af~~l~~~~l~~~~~~~~~~~~~~~~~ 282 (292)
++|.|.+++..+++||++++..+|||++|.-. ++++++-+
T Consensus 135 g~i~Ft~NG~~lg~aF~~~~~~~lyPavsl~~-~~~v~~NF 174 (213)
T 3toj_A 135 SEIIFYKNGVNQGVAYKDIFEGVYFPAISLYK-SCTVSINF 174 (213)
T ss_dssp CEEEEEETTEEEEEEEESCCSSCBEEEEEEES-SCEEEEEC
T ss_pred cEEEEEeCCeeeeeeEEcCCCCcEEEEEEcCC-CCEEEEEC
Confidence 79999999999999999998889999998744 78888765
No 19
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=33.62 E-value=30 Score=28.36 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=25.6
Q ss_pred cccCCCceeEEee--CCeeeeeecCCCc-Cccccceeee
Q psy8037 236 ILDMDEGTLSFVV--DGQYLGVAFRGLK-GRKLYPIVSA 271 (292)
Q Consensus 236 ~ld~~~~~l~f~~--~~~~l~~af~~l~-~~~l~~~~~~ 271 (292)
-||++.++|+|.. +...+=-.|.... .++|||..+-
T Consensus 134 fLDye~G~lSFYnv~d~~~lI~tF~~~~Fs~pL~P~F~~ 172 (186)
T 3uv9_A 134 FVDYEACTVSFFNITNHGFLIYKFSQCSFSKPVFPYLNP 172 (186)
T ss_dssp EEETTTTEEEEEETTTTTEEEEEECSCCCSSCBEEEEEC
T ss_pred EeecCCCEEEEEeCCCCceEEEEeCCcCCCCCEEeEEEC
Confidence 4899999999974 3344434565553 5799998865
No 20
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=29.67 E-value=60 Score=17.91 Aligned_cols=15 Identities=7% Similarity=0.246 Sum_probs=11.2
Q ss_pred CCCEEEEEEeCCCCEE
Q psy8037 176 VPDKFLVILDMDEGTL 191 (292)
Q Consensus 176 ~~d~IGV~LD~~~GtL 191 (292)
.++||.|++| +.|.+
T Consensus 3 ~~~RVrvfvd-~~g~V 17 (26)
T 1hym_B 3 RCNRVRIWVN-KRGLV 17 (26)
T ss_dssp CTTEEEEEEE-TTTEE
T ss_pred CCCEEEEEEC-CCCcE
Confidence 3589999999 55654
Done!