RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8037
(292 letters)
>gnl|CDD|240486 cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppressor of cytokine
signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4). The
SPRY domain-containing SOCS box protein family (SPSB1-4,
also known as SSB-1 to -4) is composed of a central SPRY
protein interaction domain and a C-terminal SOCS box.
All four SPSB proteins interact with c-Met, the
hepatocyte growth factor receptor, but only SPSB1,
SPSB2, and SPSB4 interact with prostate apoptosis
response protein 4 (Par-4). They are negative regulators
that recruit the ECS E3 ubiquitin ligase complex to
polyubiquitinate inducible nitric-oxide synthase (iNOS),
resulting in its proteasomal degradation, thus
contributing to protection against the cytotoxic effect
of iNOS in activated macrophages. It has been shown that
SPSB1 and SPSB4 induce the degradation of iNOS more
strongly than SPSB2. The Drosophila melanogaster SPSB1
homolog, GUSTAVUS, interacts with the DEAD box RNA
helicase Vasa. Suppressor of cytokine signaling (SOCS)
proteins negatively regulate signaling from
JAK-associated cytokine receptor complexes, and play key
roles in the regulation of immune homeostasis.
Length = 174
Score = 382 bits (983), Expect = e-136
Identities = 145/174 (83%), Positives = 161/174 (92%)
Query: 57 HAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHA 116
HAWNPEDRSLNIFVK+DD LTFHRHPVAQSTD IRG+VG+++G H+WE++W RQRGTHA
Sbjct: 1 HAWNPEDRSLNIFVKEDDPLTFHRHPVAQSTDGIRGKVGYSRGLHVWEINWPTRQRGTHA 60
Query: 117 VVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVV 176
VVGV T +APLH VGYQSLVGSN++SWGWDLGRN+LYHDSKNN G+TYP LKPDE FVV
Sbjct: 61 VVGVATAEAPLHCVGYQSLVGSNEESWGWDLGRNKLYHDSKNNPGVTYPAFLKPDENFVV 120
Query: 177 PDKFLVILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYI 230
PDKFLV+LDMDEGTLSFVVDGQYLGVAFRGLKG+ LYPIVSAVWGHCE+TMKYI
Sbjct: 121 PDKFLVVLDMDEGTLSFVVDGQYLGVAFRGLKGKTLYPIVSAVWGHCEVTMKYI 174
>gnl|CDD|240455 cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and suppressors of
cytokine signaling (SOCS) proteins. This family
consists of the SPRY domain-containing SOCS box protein
family (SPSB1-4, also known as SSB-1 to -4) as well as
F-box protein 45 (Fbxo45), a novel synaptic E3 and
ubiquitin ligase. The SPSB protein is composed of a
central SPRY protein interaction domain and a C-terminal
SOCS box. SPSB1, SPSB2, and SPSB4 interact with prostate
apoptosis response protein 4 (Par-4) and are negative
regulators that recruit the ECS E3 ubiquitin ligase
complex to polyubiquitinate inducible nitric-oxide
synthase (iNOS), resulting in its proteasomal
degradation. Fbxo45 is related to this family; it is
located N-terminal to the SPRY domain, and known to
induce the degradation of a synaptic vesicle-priming
factor, Munc13-1, via the SPRY domain, thus playing an
important role in the regulation of neurotransmission by
modulating Munc13-1 at the synapse. Suppressor of
cytokine signaling (SOCS) proteins negatively regulate
signaling from JAK-associated cytokine receptor
complexes, and play key roles in the regulation of
immune homeostasis.
Length = 171
Score = 273 bits (699), Expect = 3e-93
Identities = 105/174 (60%), Positives = 133/174 (76%), Gaps = 3/174 (1%)
Query: 57 HAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHA 116
HAWNP D S NI++K+D LTFHR PVAQSTD IRG++G+++G H WEV W RQRG+HA
Sbjct: 1 HAWNPADCSKNIYIKED-GLTFHRRPVAQSTDAIRGKIGYSRGLHAWEVKWEGRQRGSHA 59
Query: 117 VVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVV 176
VVGV T DAPL GY +L+GS+ +SWGWDL N+LYHD K G +YP E + V
Sbjct: 60 VVGVATKDAPLQCDGYVALLGSDSESWGWDLSTNKLYHDGKVVIG-SYPAGSA-TENYSV 117
Query: 177 PDKFLVILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYI 230
PD+ LVILDM++GTL+F +G+YLGVAFRGL G+ LYP VSAV+G+CEI ++Y+
Sbjct: 118 PDRVLVILDMEDGTLAFEANGEYLGVAFRGLPGKLLYPAVSAVYGNCEIRIRYL 171
>gnl|CDD|240487 cd12907, SPRY_Fbox, SPRY domain in the F-box family Fbxo45. Fbxo45
is a novel synaptic E3 and ubiquitin ligase, related to
the suppressor of cytokine signaling (SOCS) proteins and
located N-terminal to a SPRY (SPla and the ryanodine
receptor) domain. Fbxo45 induces the degradation of a
synaptic vesicle-priming factor, Munc13-1, via the SPRY
domain, thus playing an important role in the regulation
of neurotransmission by modulating Munc13-1 at the
synapse. F-box motifs are found in proteins that
function as the substrate recognition component of SCF
E3 complexes.
Length = 175
Score = 190 bits (484), Expect = 1e-60
Identities = 86/175 (49%), Positives = 114/175 (65%), Gaps = 5/175 (2%)
Query: 57 HAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHA 116
HAWNP D S N+++K + T HR+PVAQSTD RG++GF+ G H WEV W GT A
Sbjct: 1 HAWNPNDCSRNVYIKPNG-FTLHRNPVAQSTDGARGKIGFSSGRHAWEVWWEG-PLGTVA 58
Query: 117 VVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVV 176
VVG+ T +APL GY +L+GS+DQSWGW+L N L H+ YP + + V
Sbjct: 59 VVGIATKEAPLQCHGYVALLGSDDQSWGWNLVDNHLLHNGDVQG--NYPQCNNAPK-YQV 115
Query: 177 PDKFLVILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIG 231
++ VILDM++ TL+F ++LGVAFRGL LYP VSAV+G+ E+TM Y+G
Sbjct: 116 GERIRVILDMEDNTLAFERGYEFLGVAFRGLPKVCLYPAVSAVYGNTEVTMVYLG 170
Score = 69.8 bits (171), Expect = 2e-14
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 235 LILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIG 284
+ILDM++ TL+F ++LGVAFRGL LYP VSAV+G+ E+TM Y+G
Sbjct: 121 VILDMEDNTLAFERGYEFLGVAFRGLPKVCLYPAVSAVYGNTEVTMVYLG 170
>gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine
signaling 3 (SOCS3) family. The SPRY domain-containing
SOCS box protein family (SPSB1-4, also known as SSB-1 to
-4) is composed of a central SPRY protein interaction
domain and a C-terminal SOCS box. All four SPSB proteins
interact with c-Met, the hepatocyte growth factor
receptor, but SOCS3 regulates cellular response to a
variety of cytokines such as leukemia inhibitory factor
(LIF) and interleukin 6. SOCS3, along with SOCS1, are
expressed by immune cells and cells of the central
nervous system (CNS) and have the potential to impact
immune processes within the CNS. In non-small cell lung
cancer (NSCLC), SOCS3 is silenced and proline-rich
tyrosine kinase 2 (Pyk2) is over-expressed; it has been
suggested that SOCS3 could be an effective way to
prevent the progression of NSCLC due to its role in
regulating Pyk2 expression.
Length = 187
Score = 103 bits (259), Expect = 6e-27
Identities = 61/179 (34%), Positives = 100/179 (55%), Gaps = 20/179 (11%)
Query: 59 WNPEDRSLN-IFVKDDDKLTFHRHPV-AQSTDCIRGRVGFTK-GFHIWEVHWSARQRGTH 115
W+ +D+S + + +D+ ++ FH P + T +RG T+ G H WE+ + GT
Sbjct: 4 WDEDDKSPSVVLSEDNREVYFH--PDYSCGTAAVRGSKPLTEGGQHYWEIKMLSPVYGTS 61
Query: 116 AVVGVGTIDAPLHSVGYQ--SLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYP-TLLKPDE 172
+VG+GT DA LH+ Y+ SL+G +++SWG + L+H+ G + P T ++
Sbjct: 62 MMVGIGTDDADLHAYRYEFCSLLGLDEESWGLSY-KGLLWHN-----GESRPYTEKFGNQ 115
Query: 173 TFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRGLK--GRKLYPIVSAVWGHCEITMKY 229
++ V LDM GTL+F +G+ LGVAF GL+ G+KLYP+VS+ E+ +
Sbjct: 116 GTIIG----VHLDMWSGTLTFYKNGKPLGVAFTGLQNDGKKLYPMVSSTAAKSEMKLIN 170
Score = 56.8 bits (138), Expect = 7e-10
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 237 LDMDEGTLSFVVDGQYLGVAFRGLK--GRKLYPIVSAVWGHCEITMKY 282
LDM GTL+F +G+ LGVAF GL+ G+KLYP+VS+ E+ +
Sbjct: 123 LDMWSGTLTFYKNGKPLGVAFTGLQNDGKKLYPMVSSTAAKSEMKLIN 170
>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor.
Domain of unknown function. Distant homologues are
domains in butyrophilin/marenostrin/pyrin homologues.
Length = 122
Score = 80.4 bits (199), Expect = 5e-19
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 98 KGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHDSK 157
G H +EV G H VGV T P Y +L+G + SWG+D + YH
Sbjct: 1 SGRHYFEVEI---GDGGHWRVGVATKSVPRG---YFALLGEDKGSWGYDGDGGKKYH--- 51
Query: 158 NNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYL-GVAFRGLK-GRKLYPI 215
N+TG Y L+ D LD++ GT+SF +G+YL G+AF +K LYP
Sbjct: 52 NSTGPEYGLPLQEP-----GDVIGCFLDLEAGTISFYKNGKYLHGLAFFDVKFSGPLYPA 106
Query: 216 VSAVWGHCEITMKY 229
S + + + +
Sbjct: 107 FS-LGSGNSVRLNF 119
Score = 38.4 bits (90), Expect = 7e-04
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 236 ILDMDEGTLSFVVDGQYL-GVAFRGLK-GRKLYPIVSAVWGHCEITMKY 282
LD++ GT+SF +G+YL G+AF +K LYP S + + + +
Sbjct: 72 FLDLEAGTISFYKNGKYLHGLAFFDVKFSGPLYPAFS-LGSGNSVRLNF 119
>gnl|CDD|240451 cd11709, SPRY, SPRY domain. SPRY domains, first identified in the
SP1A kinase of Dictyostelium and rabbit Ryanodine
receptor (hence the name), are homologous to B30.2. SPRY
domains have been identified in at least 11 protein
families, covering a wide range of functions, including
regulation of cytokine signaling (SOCS), RNA metabolism
(DDX1 and hnRNP), immunity to retroviruses (TRIM5alpha),
intracellular calcium release (ryanodine receptors or
RyR) and regulatory and developmental processes (HERC1
and Ash2L). B30.2 also contains residues in the
N-terminus that form a distinct PRY domain structure;
i.e. B30.2 domain consists of PRY and SPRY subdomains.
B30.2 domains comprise the C-terminus of three protein
families: BTNs (receptor glycoproteins of immunoglobulin
superfamily); several TRIM proteins (composed of
RING/B-box/coiled-coil or RBCC core); Stonutoxin
(secreted poisonous protein of the stonefish Synanceia
horrida). While SPRY domains are evolutionarily ancient,
B30.2 domains are a more recent adaptation where the
SPRY/PRY combination is a possible component of immune
defense. Mutations found in the SPRY-containing proteins
have shown to cause Mediterranean fever and Opitz
syndrome.
Length = 118
Score = 77.5 bits (191), Expect = 7e-18
Identities = 42/126 (33%), Positives = 54/126 (42%), Gaps = 15/126 (11%)
Query: 99 GFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHDSKN 158
G +EV + G VG T L + VG ++ SWG+D R R H +
Sbjct: 1 GKWYYEVRVDSGNGG-LIQVGWATKSFSLDG---ERGVGDDEGSWGFDGSRLRKGHGGSS 56
Query: 159 NTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRGL--KGRKLYPIV 216
G + D +LD+D GTLSF ++G LGVAF L KG LYP V
Sbjct: 57 EPGG---------RPWKSGDVVGCLLDLDAGTLSFSLNGVDLGVAFENLFRKGGPLYPAV 107
Query: 217 SAVWGH 222
S G
Sbjct: 108 SLGSGQ 113
Score = 50.1 bits (120), Expect = 6e-08
Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 236 ILDMDEGTLSFVVDGQYLGVAFRGL--KGRKLYPIVSAVWGH 275
+LD+D GTLSF ++G LGVAF L KG LYP VS G
Sbjct: 72 LLDLDAGTLSFSLNGVDLGVAFENLFRKGGPLYPAVSLGSGQ 113
>gnl|CDD|216029 pfam00622, SPRY, SPRY domain. SPRY Domain is named from SPla and
the RYanodine Receptor. Domain of unknown function.
Distant homologues are domains in
butyrophilin/marenostrin/pyrin homologues.
Length = 125
Score = 75.9 bits (187), Expect = 3e-17
Identities = 38/134 (28%), Positives = 52/134 (38%), Gaps = 15/134 (11%)
Query: 98 KGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHDSK 157
G H +EV G H VG T L+G ++ SWG+D YH
Sbjct: 1 SGKHYFEVEVDTGGGG-HVRVGWATKSVKK---PGFRLLGDDEGSWGYDGSGGSKYH--- 53
Query: 158 NNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYL-GVAFRGLK-GRKLYPI 215
N Y F D LD++EG +SF +G+ L G FR ++ G LYP
Sbjct: 54 NGESEPYG------LKFQEGDVIGCFLDLEEGEISFTKNGKDLGGYTFRNVEFGGPLYPA 107
Query: 216 VSAVWGHCEITMKY 229
VS + +
Sbjct: 108 VSLGSTGEAVQFNF 121
Score = 44.7 bits (106), Expect = 5e-06
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 203 AFRGLKGRKLYPIVSAVWGHCEITMKYIGGLDLI---LDMDEGTLSFVVDGQYL-GVAFR 258
+ G G K + G E D+I LD++EG +SF +G+ L G FR
Sbjct: 43 GYDGSGGSKYH------NGESEPYGLKFQEGDVIGCFLDLEEGEISFTKNGKDLGGYTFR 96
Query: 259 GLK-GRKLYPIVSAVWGHCEITMKY 282
++ G LYP VS + +
Sbjct: 97 NVEFGGPLYPAVSLGSTGEAVQFNF 121
>gnl|CDD|240469 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tripartite
motif-containing proteins, TRIM9 and TRIM67. This
domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of TRIM9 proteins. TRIM9 protein is
expressed mainly in the cerebral cortex, and functions
as an E3 ubiquitin ligase. It has been shown that TRIM9
is localized to the neurons in the normal human brain
and its immunoreactivity in affected brain areas in
Parkinson's disease and dementia with Lewy bodies is
severely decreased, possibly playing an important role
in the regulation of neuronal function and participating
in pathological process of Lewy body disease through its
ligase. TRIM67 negatively regulates Ras activity via
degradation of 80K-H , leading to neural
differentiation, including neuritogenesis.
Length = 172
Score = 54.6 bits (132), Expect = 3e-09
Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 29/135 (21%)
Query: 92 GRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWG------- 144
G VGF++G H WEV GV D V ++G +D+ W
Sbjct: 42 GSVGFSRGVHYWEVTIDRYDGHPDPAFGVARAD-----VAKDKMLGKDDKGWAMYIDSNR 96
Query: 145 -WDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLG-V 202
W L N H ++ G+T +++ V+LD+D GTLSF V+ + G V
Sbjct: 97 SWFLHNNE--HSNRTEGGITVGSVIG------------VLLDLDRGTLSFYVNDEPQGPV 142
Query: 203 AFRGLKGRKLYPIVS 217
AF L G YP S
Sbjct: 143 AFTNLPG-LFYPAFS 156
Score = 36.1 bits (84), Expect = 0.008
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 237 LDMDEGTLSFVVDGQYLG-VAFRGLKGRKLYPIVS 270
LD+D GTLSF V+ + G VAF L G YP S
Sbjct: 123 LDLDRGTLSFYVNDEPQGPVAFTNLPG-LFYPAFS 156
>gnl|CDD|240471 cd12891, SPRY_PRY_C-IV_2, PRY/SPRY domain in tripartite
motif-containing (TRIM) proteins, including TRIM14-like,
TRIM16-like, TRIM25-like, TRIM47-like and RNF135 and
stonustoxin. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of several Class IV TRIM
proteins, including TRIM14, TRIM16 and TRIM25, TRIM47
as well as RING finger protein RNF135 and stonustoxin, a
secreted poisonous protein of the stonefish Synanceja
horrida. TRIM16 (also known as estrogen-responsive B box
protein or EBBP) has E3 ubiquitin ligase activity. It is
a regulator of keratinocyte differentiation and a tumor
suppressor in retinoid-sensitive neuroblastoma. TRIM25
(also called Efp) ubiquitinates the N terminus of the
viral RNA receptor retinoic acid-inducible gene-I
(RIG-I) in response to viral infection, leading to
activation of the RIG-I signaling pathway, thus
resulting in type I interferon production to limit viral
replication. It has been shown that the influenza A
virus targets TRIM25 and disables its antiviral
function. TRIM47, also known as GOA (Gene overexpressed
in astrocytoma protein) or RNF100 (RING finger protein
100), is highly expressed in kidney tubular cells, but
low expressed in most tissue. It is overexpressed in
astrocytoma tumor cells and plays an important role in
the process of dedifferentiation that is associated with
astrocytoma tumorigenesis. RNF135 ubiquitinates RIG-I
(retinoic acid-inducible gene-I) to promote
interferon-beta induction during the early phase of
viral infection. Stonustoxin (STNX) is a hypotensive and
lethal protein factor that also possesses other
biological activities such as species-specific hemolysis
(due to its ability to form pores in the cell membrane)
and platelet aggregation, edema-induction, and
endothelium-dependent vasorelaxation (mediated by the
nitric oxide pathway and activation of potassium
channels).
Length = 169
Score = 49.1 bits (118), Expect = 3e-07
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 95 GFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLY- 153
+ G H WEV WS G+ VGV G S +G ND+SW + ++
Sbjct: 48 SLSSGRHYWEVEWS----GSGVSVGVAYKSIGRKGSGDDSRLGRNDKSWCLEWSGDKYSA 103
Query: 154 -HDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF 193
H++K T L P + V LD + GTLSF
Sbjct: 104 WHNNK-ETPLPGPP----------SSRIGVYLDYEAGTLSF 133
>gnl|CDD|240461 cd12881, SPRY_HERC1, SPRY domain in HERC1. This SPRY domain is
found in the HERC1, a large protein related to
chromosome condensation regulator RCC1. It is widely
expressed in many tissues, playing an important role in
intracellular membrane trafficking in the cytoplasm as
well as Golgi apparatus. HERC1 also interacts with
tuberous sclerosis 2 (TSC2, tuberin), which suppresses
cell growth, and results in the destabilization of TSC2.
However, the biological function of HERC1 has yet to be
defined.
Length = 160
Score = 47.3 bits (113), Expect = 1e-06
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 152 LYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRGLKGRK 211
LYH+ + L + F D +LDM+E TLSF +G+ GVAF + +
Sbjct: 88 LYHNGE--------KLSRLSPKFTQGDYITCVLDMEERTLSFGKNGEEPGVAFEDVDSTE 139
Query: 212 LYPIVS 217
LYP V
Sbjct: 140 LYPCVM 145
Score = 45.8 bits (109), Expect = 3e-06
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 221 GHCEITMKYIGGLDLI---LDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIVS 270
D I LDM+E TLSF +G+ GVAF + +LYP V
Sbjct: 93 EKLSRLSPKFTQGDYITCVLDMEERTLSFGKNGEEPGVAFEDVDSTELYPCVM 145
>gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins,
SSH4, HECT E3 and SPRYD3. This family includes SPRY
domains found in Ran binding proteins (RBP or RanBPM) 9
and 10, SSH4 (suppressor of SHR3 null mutation protein
4), SPRY domain-containing protein 3 (SPRYD3) as well as
HECT, a C-terminal catalytic domain of a subclass of
ubiquitin-protein ligase (E3). RanBP9 and RanBP10 act as
androgen receptor (AR) coactivators. Both consist of the
N-terminal proline- and glutamine-rich regions, the SPRY
domain, and LisH-CTLH and CRA motifs. The SPRY domain in
SSH4 may be involved in cargo recognition, either
directly or by combination with other adaptors, possibly
leading to a higher selectivity. SPRYD3 is highly
expressed in most tissues in humans, possibly involved
in important cellular processes. HECT E3 mediates the
direct transfer of ubiquitin from E2 to substrate.
Length = 132
Score = 45.7 bits (109), Expect = 2e-06
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 23/129 (17%)
Query: 103 WEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGW--DLGRNRLYHDSKNNT 160
+EV +G T PL+ + G D S+G+ D GR +Y
Sbjct: 18 FEVTILDLGEKGIVSIGFCTSGFPLNR-----MPGWEDGSYGYHGDDGR--VYLGGGEGE 70
Query: 161 GLTYPTLLKPDETFVVPDKFLVI---LDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIVS 217
F D V+ ++ G + F +G+ LG AF + +LYP V
Sbjct: 71 NY--------GPPFGTGD---VVGCGINFKTGEIFFTKNGELLGTAFENVVKGRLYPTVG 119
Query: 218 AVWGHCEIT 226
++
Sbjct: 120 LGSPGVKVR 128
Score = 38.4 bits (90), Expect = 7e-04
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 237 LDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCEIT 279
++ G + F +G+ LG AF + +LYP V ++
Sbjct: 86 INFKTGEIFFTKNGELLGTAFENVVKGRLYPTVGLGSPGVKVR 128
>gnl|CDD|240462 cd12882, SPRY_RNF123, SPRY domain at N-terminus of ring finger
protein 123. This SPRY domain is found at the
N-terminus of RING finger protein 123 domain (also known
as E3 ubiquitin-protein ligase RNF123). The ring finger
domain motif is present in a variety of functionally
distinct proteins and known to be involved in
protein-protein and protein-DNA interactions. RNF123
displays E3 ubiquitin ligase activity toward the
cyclin-dependent kinase inhibitor p27 (Kip1).
Length = 128
Score = 45.4 bits (108), Expect = 3e-06
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 136 VGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVV 195
VG S+ +D R R ++ S G E +V D +D+DEGT+SF
Sbjct: 42 VGDTPDSYAYDGNRVRKWNVSTQKYG----------EPWVAGDVIGCCIDLDEGTISFYR 91
Query: 196 DGQYLGVAF---RGLKGRKLYPIVS 217
+G+ LGVAF R G +P VS
Sbjct: 92 NGRSLGVAFDNVRRGPGLAYFPAVS 116
Score = 38.8 bits (91), Expect = 6e-04
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 237 LDMDEGTLSFVVDGQYLGVAF---RGLKGRKLYPIVS 270
+D+DEGT+SF +G+ LGVAF R G +P VS
Sbjct: 80 IDLDEGTISFYRNGRSLGVAFDNVRRGPGLAYFPAVS 116
>gnl|CDD|240492 cd13734, SPRY_PRY_C-I, PRY/SPRY domain in tripartite
motif-containing proteins 1, 9, 18, 36, 46, 67,76
(TRIM1, TRIM9, TRIM18, TRIM36, TRIM46, TRIM67, TRIM76).
This domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of several Class I TRIM proteins,
including TRIM1, TRIM9, TRIM18, TRIM36, TRIM46, TRIM67
and TRIM76. TRIM1 (also known as MID2) and its close
homolog, TRIM18 (also known as MID1), both contain a
B30.2-like domain at their C-terminus and a single
fibronectin type III (FN3) motif between it and their
N-terminal RBCC domain. Their coiled-coil motifs mediate
both homo- and heterodimerization, a prerequisite for
association of the rapamycin-sensitive PP2A regulatory
subunit Alpha 4 with microtubules. Mutations in TRIM18
have shown to cause Opitz syndrome, a disorder causing
congenital anomalies such as cleft lip and palate as
well as heart defects. TRIM9 is expressed mainly in the
cerebral cortex, and functions as an E3 ubiquitin
ligase. Its immunoreactivity is severely decreased in
affected brain areas in Parkinson's disease and dementia
with Lewy bodies, possibly playing an important role in
the regulation of neuronal function and participating in
pathological process of Lewy body disease through its
ligase. TRIM36 interacts with centromere protein-H, one
of the kinetochore proteins and possibly associates with
chromosome segregation; an excess of TRIM36 may cause
chromosomal instability. TRIM46 has not yet been
characterized. TRIM67 negatively regulates Ras activity
via degradation of 80K-H, leading to neural
differentiation, including neuritogenesis. TRIM76 (also
known as cardiomyopathy-associated protein 5 or CMYA5)
is a muscle-specific member of the TRIM superfamily, but
lacks the RING domain. It is possibly involved in
protein kinase A signaling as well as vesicular
trafficking. It has also been implicated in Duchenne
muscular dystrophy and cardiac disease.
Length = 169
Score = 45.0 bits (107), Expect = 7e-06
Identities = 33/104 (31%), Positives = 38/104 (36%), Gaps = 20/104 (19%)
Query: 92 GRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNR 151
G + G H WEV + R T VGV P + L G N SW NR
Sbjct: 48 GDTAISSGRHYWEV---SVDRSTSYRVGVAYKSVP----RDEDL-GKNSTSWCLRRTNNR 99
Query: 152 LY--HDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF 193
HD K T P + V+LD D GTLSF
Sbjct: 100 YSARHDGKVV---------DLTVT-PHPRRIGVLLDYDRGTLSF 133
>gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear
ribonucleoprotein U-like (hnRNP) protein 1. This
domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of heterogeneous nuclear
ribonucleoprotein U-like (hnRNP) protein 1 (also known
as HNRPUL1 ) which is a major constituent of nuclear
matrix or scaffold and binds directly to DNA sequences
through the N-terminal acidic region named serum amyloid
P (SAP). Its function is specifically modulated by
E1B-55kDa in adenovirus-infected cells. HNRPUL1 also
participates in ATR protein kinase signaling pathways
during adenovirus infection. Two transcript variants
encoding different isoforms have been found for this
gene. When associated with bromodomain-containing
protein 7 (BRD7), it activates transcription of
glucocorticoid-responsive promoter in the absence of
ligand-stimulation.
Length = 176
Score = 41.4 bits (98), Expect = 1e-04
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 25/108 (23%)
Query: 114 THAV-VGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHDSK-NNTGLTYPTLLKPD 171
H V VG + L +G S+G+ + + K + G
Sbjct: 69 PHVVRVGWSVDSSSLQ-------LGEEKLSYGYG-STGKKSTNGKFEDYG---------- 110
Query: 172 ETFVVPDKFLVILDMD--EGTLSFVVDGQYLGVAFR---GLKGRKLYP 214
E F D LD++ +SF +G+ LGVAFR L+G+ L+P
Sbjct: 111 EPFGEGDVIGCYLDLESEPVEISFTKNGKDLGVAFRIDKELEGKALFP 158
Score = 36.4 bits (85), Expect = 0.007
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 237 LDMDEGTLSFVVDGQYLGVAFR---GLKGRKLYP 267
L+ + +SF +G+ LGVAFR L+G+ L+P
Sbjct: 125 LESEPVEISFTKNGKDLGVAFRIDKELEGKALFP 158
>gnl|CDD|240476 cd12896, SPRY_PRY_TRIM65, PRY/SPRY domain in tripartite
motif-containing domain 65 (TRIM65). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM65 proteins (composed of
RING/B-box/coiled-coil core and also known as RBCC
proteins). The SPRY/PRY combination is a possible
component of immune defense. This protein family has not
been characterized.
Length = 182
Score = 40.5 bits (95), Expect = 3e-04
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 16/124 (12%)
Query: 95 GFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQS-LVGSNDQSWGWDLGRNRLY 153
F+ G H WEV S V+GV P G + +G N SWG + + Y
Sbjct: 59 SFSSGHHYWEVELSDHS----VVLGVAYETLPRKKKGRKKNNIGRNPLSWGLQV-QEDCY 113
Query: 154 HDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF--VVDGQYLGVAFRGLKGRK 211
N P T + V LD + GTL+F + DG +F + +
Sbjct: 114 SAWHNGEEQQLQ---GPSYTKLG-----VSLDCEAGTLTFYGLGDGTQPLHSFHCIFTQP 165
Query: 212 LYPI 215
L+P+
Sbjct: 166 LFPV 169
>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2. This SPRY domain is found
at the C-terminus of Ash2 (absent, small, or homeotic
discs 2) -like proteins, core components of all
mixed-lineage leukemia (MLL) family histone
methyltransferases. Ash2 is a member of the trithorax
group of transcriptional regulators of the Hox genes.
Recent studies show that the SPRY domain of Ash2
mediates the interaction with RbBP5 and has an important
role in regulating the methyltransferase activity of MLL
complexes. In yeast, Ash2 is involved in histone
methylation and is required for the earliest stages of
embryogenesis.
Length = 149
Score = 39.8 bits (94), Expect = 3e-04
Identities = 35/154 (22%), Positives = 54/154 (35%), Gaps = 32/154 (20%)
Query: 72 DDDKLTFHRHPVAQSTDC----IRGRVGFTKGFHIWEVHW-SARQRGTHAVVGVGTIDAP 126
+D+LT + + R G +G +EV H VG +A
Sbjct: 4 SEDRLTV-------TGEKGYRMARANHGVREGKWYFEVKILEGGGETGHVRVGWSRREAS 56
Query: 127 LHSVGYQSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDK--FLVIL 184
L Q+ VG + S+ + +H S+ P + F D L+ L
Sbjct: 57 L-----QAPVGYDKYSYAYRDKDGEKFHLSR-----GKP---YGEPGFKEGDVIGCLITL 103
Query: 185 DMDEGTLSFVVDGQYLGVAFRGLKGRKLY-PIVS 217
+ F +G+ GVAF + G Y P VS
Sbjct: 104 P----KIEFFKNGKSQGVAFEDIYGTGGYYPAVS 133
Score = 30.2 bits (69), Expect = 0.76
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 244 LSFVVDGQYLGVAFRGLKGRKLY-PIVS 270
+ F +G+ GVAF + G Y P VS
Sbjct: 106 IEFFKNGKSQGVAFEDIYGTGGYYPAVS 133
>gnl|CDD|240494 cd13736, SPRY_PRY_TRIM25, PRY/SPRY domain in tripartite
motif-containing domain 25 (TRIM25). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM25 proteins (composed of
RING/B-box/coiled-coil core and also known as RBCC
proteins). TRIM25 (also called Efp) ubiquitinates the N
terminus of the viral RNA receptor retinoic
acid-inducible gene-I (RIG-I) in response to viral
infection, leading to activation of the RIG-I signaling
pathway, thus resulting in type I interferon production
to limit viral replication. It has been shown that the
influenza A virus targets TRIM25 and disables its
antiviral function.
Length = 169
Score = 39.5 bits (92), Expect = 5e-04
Identities = 40/154 (25%), Positives = 58/154 (37%), Gaps = 26/154 (16%)
Query: 73 DDKLTFHRHPVAQSTDC--IRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSV 130
DD + HP + T C + G F +G H WEV + G+G +
Sbjct: 25 DDPANYPEHP-QRFTVCSQVLGTKCFKQGIHYWEVEMQSNN-----FCGLGICYGSMDRQ 78
Query: 131 GYQSLVGSNDQSW--GWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDE 188
G S +G N +SW W + +H N+ P + V+LD D+
Sbjct: 79 GPSSRLGRNSESWCVEWFNVKISAWH---NSVEKVLPN--------TKATRVGVLLDCDQ 127
Query: 189 GTLSF--VVDGQYLGVAFRGLKGRKLYPIVSAVW 220
G ++F V D YL F +YP A W
Sbjct: 128 GFVTFYNVQDKAYLFYKFVFPFTEAVYP---AFW 158
>gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria. This family
contains SPRY-like domains that are found only in
bacterial and are mostly uncharacterized. SPRY domains,
first identified in the SP1A kinase of Dictyostelium and
rabbit Ryanodine receptor (hence the name), are
homologous to B30.2. SPRY domains have been identified
in at least 11 eukaryotic protein families, covering a
wide range of functions, including regulation of
cytokine signaling (SOCS), RNA metabolism (DDX1 and
hnRNP), immunity to retroviruses (TRIM5alpha),
intracellular calcium release (ryanodine receptors or
RyR) and regulatory and developmental processes (HERC1
and Ash2L).
Length = 128
Score = 38.2 bits (89), Expect = 8e-04
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 17/104 (16%)
Query: 103 WEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHDSKNNTGL 162
WEV + + A +GV L++ +G S+G+ LG ++G
Sbjct: 5 WEVTVVSSTSSSAAGIGVAPAAVTLNNG-----LGIELSSYGYSLG---------VSSGN 50
Query: 163 TYP---TLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVA 203
TY T+ F D V LD+D G + F +G + G
Sbjct: 51 TYSGGSTVASFGAGFTAGDVIGVALDLDAGKIWFYKNGVWQGSG 94
>gnl|CDD|240473 cd12893, SPRY_PRY_TRIM35, PRY/SPRY domain in tripartite
motif-containing protein 35 (TRIM35). This PRY/SPRY
domain is found at the C-terminus of the overall domain
architecture of tripartite motif 35, TRIM35 (also known
as hemopoietic lineage switch protein), which includes a
RING finger domain (RING) and a B-box motif (BBOX).
TRIM35 may play a role as a tumor suppressor and is
implicated in the cell death mechanism.
Length = 171
Score = 38.4 bits (90), Expect = 0.001
Identities = 30/111 (27%), Positives = 39/111 (35%), Gaps = 25/111 (22%)
Query: 89 CIRGRVGFTKGFHIWEVH------WSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQS 142
C+ G GF+ G H W+V W VGV SV + S+ +S
Sbjct: 43 CVLGSEGFSSGSHSWDVEVGDNTDW---------AVGVAA-----ESVQRKGKFTSSPES 88
Query: 143 WGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF 193
W + + T P P P + V LD DEG LSF
Sbjct: 89 GFW-----SIGFYEGEYSARTSPEPSTPLRVKQKPQRIRVQLDWDEGKLSF 134
>gnl|CDD|240482 cd12902, SPRY_PRY_RNF135, PRY/SPRY domain in RING finger protein
RNF135. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of the RING finger protein
RNF135 (also known as Riplet/RNF135), which
ubiquitinates RIG-I (retinoic acid-inducible gene-I) to
promote interferon-beta induction during the early phase
of viral infection. Normally, RIG-I is activated by
TRIM25 in response to viral infection, leading to
activation of the RIG-I signaling pathway, thus
resulting in type I interferon production to limit viral
replication. However, RNF135, consisting of an
N-terminal RING finger domain, C-terminal SPRY and PRY
motifs and showing sequence similarity to TRIM25, acts
as an alternative factor that promotes RIG-I activation
independent of TRIM25.
Length = 168
Score = 38.3 bits (89), Expect = 0.002
Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 31/136 (22%)
Query: 69 FVKDDDKLTFHRHPVAQSTDCIRGRV-------GFTKGFHIWEVHWSARQRGTHAVVGVG 121
++T RHP A + R + GF+ G H WEV + VGV
Sbjct: 14 VSPTSRRVTVSRHPQAYAWSPERFSISQVMCSQGFSSGCHYWEVDTRN---SSGWAVGVA 70
Query: 122 TIDAPLHSVGYQSLVGSNDQSW--GWDLGRNRL--YHDSKNNTGLTYPTLLKPDETFVVP 177
+ +G + +G SW W G +L +H +K T L D+ P
Sbjct: 71 S-----WEIGRRDKLGRTMDSWCIEW-SGPKQLSAWHKNKK-------TFLGKDK----P 113
Query: 178 DKFLVILDMDEGTLSF 193
V LD++ GTLSF
Sbjct: 114 SVVGVFLDLENGTLSF 129
>gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1.
This SPRY domain is associated with the DEAD box gene,
DDX1, an RNA-dependent ATPase involved in HIV-1 Rev
function and virus replication. It is suggested that
DDX1 acts as a cellular cofactor by promoting
oligomerization of Rev on the Rev response element
(RRE). DDX1 RNA is overexpressed in breast cancer, data
showing a strong and independent association between
poor prognosis and deregulation of the DEAD box protein
DDX1, thus potentially serving as an effective
prognostic biomarker for early recurrence in primary
breast cancer. DDX1 also interacts with RelA and
enhances nuclear factor kappaB-mediated transcription.
DEAD-box proteins are associated with all levels of RNA
metabolism and function, and have been implicated in
translation initiation, transcription, RNA splicing,
ribosome assembly, RNA transport, and RNA decay.
Length = 155
Score = 37.9 bits (89), Expect = 0.002
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 183 ILDMDEGTLSFVVDGQYLGVAFR---GLKGRKLYPIVS 217
+LD+D GT+SF +G+ LGVAF L+ + L+P V
Sbjct: 104 LLDLDNGTISFSKNGKDLGVAFDIPPKLRNQALFPAVC 141
Score = 37.9 bits (89), Expect = 0.002
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 236 ILDMDEGTLSFVVDGQYLGVAFR---GLKGRKLYPIVS 270
+LD+D GT+SF +G+ LGVAF L+ + L+P V
Sbjct: 104 LLDLDNGTISFSKNGKDLGVAFDIPPKLRNQALFPAVC 141
>gnl|CDD|240477 cd12897, SPRY_PRY_TRIM50_62_72, PRY/SPRY domain in tripartite
motif-binding (TRIM) proteins TRIM50, TRIM62 and TRIM72.
This domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of several TRIM proteins, including
TRIM72, TRIM62 and TRIM50. TRIM72 (also known as MG53)
has been shown to perform a critical function in
membrane repair following acute muscle injury by
nucleating the assembly of the repair machinery at
injury sites. It is expressed specifically in skeletal
muscle and heart, and tethered to the plasma membrane
and cytoplasmic vesicles via its interaction with
phosphatidylserine. TRIM62 is involved in the
morphogenesis of the mammary gland; loss of TRIM62 gene
expression in breast is associated with increased risk
of recurrence in early-onset breast cancer. TRIM50, an
E3 ubiquitin ligase, is deleted in Williams-Beuren (WBS)
syndrome, a multi-system neurodevelopmental disorder
caused by the deletion of contiguous genes at chromosome
region 7q11.23.
Length = 186
Score = 38.0 bits (89), Expect = 0.002
Identities = 40/137 (29%), Positives = 49/137 (35%), Gaps = 19/137 (13%)
Query: 89 CIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWG-WDL 147
C+ GF+ G H WEV + T +GV + G L N G W +
Sbjct: 55 CVLASEGFSSGRHYWEVDVGDK---TKWDLGVASETVS--RKGKLQLSPEN----GFWTI 105
Query: 148 GRNRLYHDSKNNTGLTYP-TLLKPDETFVVPDKFLVILDMDEGTLSFV-VDGQYLGVAFR 205
G D K T P T L P K V LD +EG +SF D L F
Sbjct: 106 G----LKDGKEYEACTEPWTRLNVSGR---PQKIGVFLDCEEGEVSFYDADDMSLLYTFH 158
Query: 206 GLKGRKLYPIVSAVWGH 222
KL+P S W
Sbjct: 159 EGFPGKLFPFFSTCWHD 175
Score = 27.6 bits (62), Expect = 6.6
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 237 LDMDEGTLSFV-VDGQYLGVAFRGLKGRKLYPIVSAVWGH 275
LD +EG +SF D L F KL+P S W
Sbjct: 136 LDCEEGEVSFYDADDMSLLYTFHEGFPGKLFPFFSTCWHD 175
>gnl|CDD|240454 cd12874, SPRY_PRY, PRY/SPRY domain, also known as B30.2. This
domain contains residues in the N-terminus that form a
distinct PRY domain structure such that the B30.2 domain
consists of PRY and SPRY subdomains. B30.2 domains
comprise the C-terminus of three protein families: BTNs
(receptor glycoproteins of immunoglobulin superfamily);
several TRIM proteins (composed of
RING/B-box/coiled-coil core); Stonutoxin (secreted
poisonous protein of the stonefish Synanceia horrida).
While SPRY domains are evolutionarily ancient, B30.2
domains are a more recent adaptation where the SPRY/PRY
combination is a possible component of immune defense.
Among the TRIM proteins, also known as the N-terminal
RING finger/B-box/coiled coil (RBCC) family, only
Classes I and IV contain the B30.2 domain that has
evolved under positive selection. Class IV TRIM proteins
include multiple members involved in antiviral immunity
at various levels of interferon signaling cascade.
Length = 167
Score = 37.8 bits (88), Expect = 0.002
Identities = 33/114 (28%), Positives = 40/114 (35%), Gaps = 15/114 (13%)
Query: 89 CIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLG 148
+ G F G H WEV V VG L G L G N+ SW
Sbjct: 42 TVLGDTSFLSGRHYWEVEV-----QKSKVYIVGVAYKSLSRKGSCRL-GKNNGSWVVHCN 95
Query: 149 RNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF--VVDGQYL 200
+ S NN P + P++ V LD D G+LSF V G L
Sbjct: 96 NWNEFAASHNNP--VTPLDVTVG-----PERVGVFLDFDVGSLSFYNVSSGTLL 142
>gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and
10. This family includes SPRY domain in Ran binding
protein (RBP or RanBPM) 9 and 10, and similar proteins.
RanBP9 (also known as RanBPM), a binding partner of Ran,
is a small Ras-like GTPase that exerts multiple
functions via interactions with various proteins. RanBP9
and RanBP10 also act as androgen receptor (AR)
coactivators. Both consist of the N-terminal proline-
and glutamine-rich regions, the SPRY domain, and
LisH-CTLH and CRA motifs. SPRY domain of RanBPM forms a
complex with CD39, a prototypic member of the NTPDase
family, thus down-regulating activity substantially.
RanBP10 enhances the transcriptional activity of AR in a
ligand-dependent manner and exhibits a protein
expression pattern different from RanBPM in various cell
lines. RanBP10 is highly expressed in AR-positive
prostate cancer LNCaP cells, while RanBPM is abundant in
WI-38 and MCF-7 cells.
Length = 153
Score = 36.8 bits (86), Expect = 0.004
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 20/82 (24%)
Query: 141 QSWGWDLGRNRLYH--D----SKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFV 194
SWG YH D S + TG Y TF D ++ + T+ +
Sbjct: 71 HSWG--------YHGDDGHSFSSSGTGKPY------GPTFTTGDVIGCGINFVDNTIFYT 116
Query: 195 VDGQYLGVAFRGLKGRKLYPIV 216
+G LG AFR L + LYP V
Sbjct: 117 KNGVNLGTAFRDLPDKNLYPTV 138
Score = 36.0 bits (84), Expect = 0.007
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 237 LDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIV 269
++ + T+ + +G LG AFR L + LYP V
Sbjct: 106 INFVDNTIFYTKNGVNLGTAFRDLPDKNLYPTV 138
>gnl|CDD|240499 cd13741, SPRY_PRY_TRIM41, PRY/SPRY domain in tripartite
motif-binding protein 41 (TRIM41). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of tripartite motif-containing protein 41
(TRIM41). TRIM41 (also known as RING finger-interacting
protein with C kinase or RINCK) is localized to speckles
in the cytoplasm and nucleus, and functions as an E3
ligase that catalyzes the ubiquitin-mediated degradation
of protein kinase C.
Length = 199
Score = 35.9 bits (82), Expect = 0.012
Identities = 40/134 (29%), Positives = 54/134 (40%), Gaps = 27/134 (20%)
Query: 81 HPVAQSTD-CIRGRVGFTKGFHIWEVH------W---SARQRGTH--------AVVGVGT 122
HP S D C+ G GF G H WEV W +AR+ H + VG G
Sbjct: 34 HPKRFSADCCVLGAQGFRSGRHYWEVEVGGRRGWAVGAARESTHHKEKVGPGGSSVGSGD 93
Query: 123 IDAPLHSVGYQSL---VGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDK 179
+ H + L Q W +G N + ++++ T TLL P E P +
Sbjct: 94 ASSSRHHHRRRRLHLPQQPLLQREVWCVGTNGKRYQAQSS---TEQTLLSPSEK---PRR 147
Query: 180 FLVILDMDEGTLSF 193
F V LD + G L F
Sbjct: 148 FGVYLDYEAGRLGF 161
>gnl|CDD|240503 cd13745, SPRY_PRY_TRIM39, PRY/SPRY domain in butyrophilins and
butyrophilins-like proteins, pyrin, as well as
tripartite motif-containing proteins (TRIM21, 27 and
others). This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of pyrin, several tripartite
motif-containing proteins (TRIMs), including E3
ubiquitin-protein ligase (TRIM21), RET finger protein
(RFP)/tripartite motif protein 27 (TRIM27), as well as
butyrophilin (Btns) and butyrophilin-like (Btnl) family
members, with the exception of Btnl2. Btn and Btnl
family members are novel regulators of immune responses,
with many of the genes located within the MHC. They are
implicated in T-cell inhibition and modulation of
epithelial cell-T cell interactions. TRIM21 (also known
as RO52, SSA1 or RNF81) is a major autoantigen in
autoimmune diseases such as rheumatoid arthritis,
systemic lupus erythematosus, and Sjorgen's syndrome.
TRIM27 (also known as Ret finger protein, RFP or RNF76)
negatively regulates CD4 T-cells by ubiquitinating and
inhibiting the class II phosphatidylinositol 3 kinase
C2beta (PI3K-C2beta), a kinase critical for KCa3.1
channel activation. The PRY/SPRY domain of Pyrin, which
is mutated in familial Mediterranean fever patients,
interacts with inflammasome components and inhibits
proIL-1beta processing.
Length = 184
Score = 35.0 bits (80), Expect = 0.023
Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 89 CIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLG 148
C+ GFT G H WEV + TH VGV SV + + ++ W
Sbjct: 47 CVLATEGFTSGRHYWEVEVGDK---THWAVGVCR-----DSVSRKGELTPLPETGYW--- 95
Query: 149 RNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF--VVDGQYLGVAFRG 206
R RL++ K T P P V P + + LD + GTLSF V D ++ F
Sbjct: 96 RVRLWNGDK-YAATTTP--FTPLHIKVKPKRVGIFLDYEAGTLSFYNVTDRSHI-YTFTD 151
Query: 207 LKGRKLYPI 215
KL+P+
Sbjct: 152 TFTEKLWPL 160
>gnl|CDD|240485 cd12905, SPRY_PRY_TRIM_Bty_69_NF7, PRY/SPRY domain in tripartite
motif-containing protein 69 (TRIM69), Bloodthirsty (bty)
and NF7. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of TRIM69 and TRIM proteins
NF7 and bloodthirsty (bty). TRIM69 is a novel testis E3
ubiquitin ligase that may function to ubiquitinate its
particular substrates during spermatogenesis. In humans,
TRIM69 localizes in the cytoplasm and nucleus, and
requires an intact RING finger domain to function. TRIM
protein NF7, which also contains a chromodomain (CHD) at
the N-terminus and an RFP (Ret finger protein)-like
domain at the C-terminus, is required for its
association with transcriptional units of RNA polymerase
II which is mediated by a trimeric B box. In Xenopus
oocyte, xNF7 has been identified as a nuclear
microtubule-associated protein (MAP) whose
microtubule-bundling activity, but not E3-ligase
activity, contributes to microtubule organization and
spindle integrity. Bloodthirsty (bty) is a novel gene
identified in zebrafish and has been shown to likely
play a role in in regulation of the terminal steps of
erythropoiesis.
Length = 176
Score = 33.0 bits (76), Expect = 0.078
Identities = 38/139 (27%), Positives = 47/139 (33%), Gaps = 33/139 (23%)
Query: 89 CIRGRVGFTKGFHIWEVHWSARQRGTHAVVGV--------GTIDAPLHSVGYQSLVGSND 140
C+ G+ GFT G H WEV + T +GV G I G+
Sbjct: 45 CVLGKEGFTSGRHYWEVQVGDK---TDWDLGVARESINRKGKI-TLNPENGF-------- 92
Query: 141 QSWGWDLG-RNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFV-VDGQ 198
W L RN ++ K T L P K V LD + G +SF D
Sbjct: 93 ----WTLWLRNG--NEYKALDS--PSTSLSLR---SKPQKVGVFLDYEGGQVSFYDADTM 141
Query: 199 YLGVAFRGLKGRKLYPIVS 217
F KLYP S
Sbjct: 142 THIYTFTDTFTEKLYPYFS 160
>gnl|CDD|240472 cd12892, SPRY_PRY_TRIM18, PRY/SPRY domain of TRIM18/MID1, also
known as FXY or RNF59. This domain, consisting of the
distinct N-terminal PRY subdomain followed by the SPRY
subdomain, is at the C-terminus of the overall domain
architecture of MID1 (also known as FXY, RNF59, TRIM18)
gene represented by a RING finger domain (RING), two
B-box motifs (BBOX), coiled-coil C-terminal to Bbox
domain (BBC) and fibronectin type 3 domain (FN3).
Mutations in the human MID1 gene result in X-linked
Opitz G/BBB syndrome (OS), a disorder affecting
development of midline structures, causing craniofacial,
urogenital, gastrointestinal and cardiovascular
abnormalities. A unique MID1 gene mutation located in a
variable loop in the SPRY domain alters conformation of
the binding pocket and may affect the binding affinity
to the PRY/SPRY domain.
Length = 177
Score = 33.1 bits (75), Expect = 0.097
Identities = 48/191 (25%), Positives = 73/191 (38%), Gaps = 42/191 (21%)
Query: 44 LDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHP----VAQSTDCIRGRVGFTKG 99
LD A R+ +V H N+ V+ D+ + H +Q + + G V G
Sbjct: 4 LDPKSAHRKLKVSHD--------NLTVERDETSSKKSHTPERFTSQGSYGVAGNVFIDSG 55
Query: 100 FHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNR--LYHDSK 157
H WEV S T +G+ AP H +G N SW N + H+SK
Sbjct: 56 RHYWEVVISG---STWYAIGIAYKSAPKHE-----WIGKNSASWVLCRCNNNWVVRHNSK 107
Query: 158 NNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF--VVDGQYL---GVAFRGLKGRKL 212
P L + ++LD D G+LSF ++ +L +AF + +
Sbjct: 108 EIPIEPSPHL----------RRVGILLDYDNGSLSFYDALNSIHLYTFDIAF----AQPV 153
Query: 213 YPIVSAVWGHC 223
P + VW C
Sbjct: 154 CPTFT-VWNKC 163
>gnl|CDD|240467 cd12887, SPRY_NHR_like, SPRY domain in neuralized homology repeat.
This family contains the neuralized homology repeat 1
(NHR1) domain similar to the SPRY domain (known to
mediate specific protein-protein interactions) at the
C-terminus of a conserved region within eukaryotic
neuralized and neuralized-like proteins. In Drosophila,
the neuralized protein (Neur) belongs to a group of
ubiquitin ligases and is required in a subset of Notch
pathway-mediated cell fate decisions during development
of the nervous system. Neur binds to the Notch receptor
ligand Delta through its first NHR1 domain and mediates
its ubiquitination for endocytosis. Multiple copies of
this region are found in some members of the family.
Length = 161
Score = 30.9 bits (71), Expect = 0.37
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 188 EGTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCE 224
+G+L F ++G+ GVA + + +Y +V ++G CE
Sbjct: 122 DGSLHFYINGEDQGVAASNI-PQPVYAVVD-LYGQCE 156
Score = 30.9 bits (71), Expect = 0.37
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 241 EGTLSFVVDGQYLGVAFRGLKGRKLYPIVSAVWGHCE 277
+G+L F ++G+ GVA + + +Y +V ++G CE
Sbjct: 122 DGSLHFYINGEDQGVAASNI-PQPVYAVVD-LYGQCE 156
>gnl|CDD|240496 cd13738, SPRY_PRY_TRIM14, PRY/SPRY domain of tripartite
motif-binding protein 14 (TRIM14). This is a TRIM14
domain family contains residues in the N-terminus that
form a distinct PRY domain structure such that the B30.2
domain consists of PRY and SPRY subdomains. TRIM14
domains have yet to be characterized. These B30.2
domains are a more recent adaptation where the SPRY/PRY
combination is a possible component of immune defense.
It belongs to Class IV TRIM protein family which has
members involved in antiviral immunity at various levels
of interferon signaling cascade.
Length = 173
Score = 31.0 bits (70), Expect = 0.38
Identities = 39/132 (29%), Positives = 46/132 (34%), Gaps = 26/132 (19%)
Query: 92 GRVGFTKGFHIWEVHWSARQRGTHAVVG--VGTIDAPLHSVGYQSL--VGSNDQSW---G 144
R F G H WEV A G VG L G +G N SW
Sbjct: 45 SRDAFASGRHYWEVDVQ------EAGAGWWVGAAYPSLRRRGDSEAARLGCNRASWCIKR 98
Query: 145 WDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF--VVDGQYLGV 202
+DL +HD G ++ D PD+ V LD + G LSF V G
Sbjct: 99 YDL-EYWAFHD-----GQRSRLRIRDD-----PDRLGVFLDYEAGILSFYDVTGGMSHLH 147
Query: 203 AFRGLKGRKLYP 214
FR LYP
Sbjct: 148 TFRAKFQEPLYP 159
>gnl|CDD|240500 cd13742, SPRY_PRY_TRIM72, PRY/SPRY domain in tripartite
motif-binding protein 72 (TRIM72). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM72. Muscle-specific TRIM72 (also known
as Mitsugumin 53 or MG53) has been shown to perform a
critical function in membrane repair following acute
muscle injury by nucleating the assembly of the repair
machinery at injury sites. It is expressed specifically
in skeletal muscle and heart, and tethered to the plasma
membrane and cytoplasmic vesicles via its interaction
with phosphatidylserine. TRIM72 interacts with
dysferlin, a sarcolemmal protein whose deficiency causes
Miyoshi myopathy (MM) and limb girdle muscular dystrophy
type 2B (LGMD2B); this coordination plays an important
role in the repair of sarcolemma damage.
Length = 192
Score = 30.6 bits (69), Expect = 0.64
Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 34/181 (18%)
Query: 58 AWNPEDRSLNIFVKDDDK---LTFHRHPVA-------QSTDCIRGRVGFTKGFHIWEVHW 107
++P+ ++ V K + + PVA +C+ F++G H WEV
Sbjct: 15 TFDPDTAHPSLVVSSSGKRVECSEQKQPVAGDDPRRFDKANCVVSHQSFSEGEHYWEVDV 74
Query: 108 SARQRGTHAVVGVGTIDAP----LHSVGYQSLVGSNDQSWGWDLGRNRLYHDSKNNTGLT 163
+ R +GV + +AP LH+V W L ++Y + +
Sbjct: 75 GDKPRWA---LGVISAEAPRKGRLHAVPSNGF-------WLLGLKEGKIY---EAHVEAK 121
Query: 164 YPTLLKPDETFVVPDKFLVILDMDEGTLSFV----VDGQYLGVAFRGLKGRKLYPIVSAV 219
P L+ +E P + + L +G LSF D AF LYP
Sbjct: 122 EPRALRSEER---PTRIGLYLSFGDGVLSFYDASDEDNLVPLFAFHERFPGPLYPFFDVC 178
Query: 220 W 220
W
Sbjct: 179 W 179
>gnl|CDD|240479 cd12899, SPRY_PRY_TRIM76_like, PRY/SPRY domain in tripartite
motif-containing protein 76 (TRIM76)-like. This domain
is similar to the distinct PRY/SPRY subdomain found at
the C-terminus of TRIM76, a Class I TRIM protein. TRIM76
(also known as cardiomyopathy-associated protein 5 or
CMYA5 or myospryn or SPRYD2) is a muscle-specific member
of the TRIM superfamily, but lacks the RING domain. It
has been suggested that TRIM76 is involved in two
distinct processes, protein kinase A signaling and
vesicular trafficking.
Length = 176
Score = 29.4 bits (66), Expect = 1.3
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 98 KGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWD--LGRNRLYHD 155
+G H WEV T +GV D + +G+N SW L +R ++
Sbjct: 55 RGKHYWEVE---VDEHTEYRIGVAFEDTRRNG-----YLGANSTSWCMRHILTPSRHKYE 106
Query: 156 SKNNTGLTYPTLLKPDETFVV-PDKFLVILDMDEGTLSF 193
+N G T PD V P K ++LD + LSF
Sbjct: 107 FLHN-GTT------PDIRITVPPKKIGILLDYEHSKLSF 138
>gnl|CDD|216136 pfam00821, PEPCK, Phosphoenolpyruvate carboxykinase. catalyzes the
formation of phosphoenolpyruvate by decarboxylation of
oxaloacetate.
Length = 586
Score = 30.2 bits (69), Expect = 1.6
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 127 LHSVGYQSLVGSNDQSWGWDLGRNRLYHDSKNNT 160
LHSVG G D +W + + + H + T
Sbjct: 160 LHSVGAPLEPGQKDVNWPCNPDKRYIVHFPEERT 193
>gnl|CDD|240468 cd12888, SPRY_PRY_TRIM7_like, PRY/SPRY domain in tripartite
motif-binding protein 7 (TRIM7)-like, including TRIM7,
TRIM10, TRIM15, TRIM26, TRIM39, TRIM41. This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of several tripartite motif-containing (TRIM)
proteins, including TRIM7 (also referred to as
glycogenin-interacting protein, RING finger protein 90
or RNF90), TRIM10, TRIM15, TRIM26, TRIM39 and TRIM41.
TRIM7 or GNIP interacts with glycogenin and stimulates
its self-glucosylating activity via its SPRY domain.
TRIM10 (also known as hematopoietic RING finger 1
(HERF1) or TRIM10/HERF1) plays a key role in definitive
erythroid development; downregulation of the Spi-1/PU.1
oncogene induces the expression of TRIM10/HERF1, a key
factor required for terminal erythroid cell
differentiation and survival. Antiviral activity of
TRIM15 is dependent on the ability of its B-box to
interact with the MLV Gag precursor protein;
downregulation of TRIM15, along with TRIM11, enhances
virus release suggesting that these proteins contribute
to the endogenous restriction of retroviruses in cells.
Tripartite motif-containing 26 (TRIM26) function is as
yet unknown; however, since it is localized in the human
histocompatibility complex (MHC) class I region, TRIM26
may play a role in immune response although studies show
no association between TRIM26 polymorphisms and the risk
of aspirin-exacerbated respiratory disease. TRIM39 is a
MOAP-1 (Modulator of Apoptosis)-binding protein that
stabilizes MOAP-1 through inhibition of its
poly-ubiquitination process. TRIM41 (also known as RING
finger-interacting protein with C kinase or RINCK)
functions as an E3 ligase that catalyzes the
ubiquitin-mediated degradation of protein kinase C.
Length = 171
Score = 29.1 bits (66), Expect = 1.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 89 CIRGRVGFTKGFHIWEV 105
C+ G GFT G H WEV
Sbjct: 43 CVLGSEGFTSGRHYWEV 59
>gnl|CDD|213365 cd12831, TmCorA-like_u2, Uncharacterized bacterial subfamily of
the Thermotoga maritima CorA-like family. This
subfamily belongs to the Thermotoga maritima CorA
(TmCorA)-like family of the MIT superfamily of
essential membrane proteins involved in transporting
divalent cations (uptake or efflux) across membranes.
Members of the TmCorA-like family are found in all
three kingdoms of life. It is a functionally diverse
family which includes the CorA Co2+ transporter from
the hyperthermophilic Thermotoga maritima, and three
Saccharomyces cerevisiae proteins: two located in the
plasma membrane: the Mg2+ transporter Alr1p/Swc3p and
the putative Mg2+ transporter, Alr2p, and the vacuole
membrane protein Mnr2p, a putative Mg2+ transporter.
Thermotoga maritima CorA forms funnel-shaped
homopentamers, the tip of the funnel is formed from two
C-terminal transmembrane (TM) helices from each
monomer, and the large opening of the funnel from the
N-terminal cytoplasmic domains. The GMN signature motif
of the MIT superfamily occurs just after TM1, mutation
within this motif is known to abolish Mg2+ transport by
a related protein, Saccharomyces cerevisiae Alr1p.
Natural variants in this signature sequence may be
associated with the transport of different divalent
cations. The functional diversity of the MIT
superfamily may also be due to minor structural
differences regulating gating, substrate selection, and
transport.
Length = 287
Score = 29.1 bits (66), Expect = 2.9
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 55 VKHAWNPED---RSLNIFVKDDDKLTFHRHPV 83
V HA + ED +N+FV ++ +TFH+ P+
Sbjct: 51 VLHAIDQEDLEAEEVNLFVGENYIVTFHKEPI 82
>gnl|CDD|240491 cd13733, SPRY_PRY_C-IV_1, PRY/SPRY domain in tripartite
motif-containing (TRIM) proteins, including TRIM7,
TRIM35, TRIM41, TRIM50, TRIM62, TRIM69, TRIM72, NF7 and
bloodthirsty (bty). This domain, consisting of the
distinct N-terminal PRY subdomain followed by the SPRY
subdomain, is found at the C-terminus of several Class
IV TRIM proteins, including TRIM7, TRIM35, TRIM41,
TRIM50, TRIM62, TRIM69, TRIM72, TRIM protein NF7 and
bloodthirsty (bty). TRIM7 interacts with glycogenin and
stimulates its self-glucosylating activity via its SPRY
domain. TRIM35 may play a role as a tumor suppressor and
is implicated in the cell death mechanism. TRIM41 is
localized to speckles in the cytoplasm and nucleus, and
functions as an E3 ligase that catalyzes the
ubiquitin-mediated degradation of protein kinase C.
TRIM50, an E3 ubiquitin ligase, is deleted in
Williams-Beuren (WBS) syndrome, a multi-system
neurodevelopmental disorder caused by the deletion of
contiguous genes at chromosome region 7q11.23. TRIM62 is
involved in the morphogenesis of the mammary gland; loss
of TRIM62 gene expression in breast is associated with
increased risk of recurrence in early-onset breast
cancer. TRIM69 is a novel testis E3 ubiquitin ligase
that may function to ubiquitinate its particular
substrates during spermatogenesis. In humans, TRIM69
localizes in the cytoplasm and nucleus, and requires an
intact RING finger domain to function. TRIM protein NF7,
which also contains a chromodomain (CHD) at the
N-terminus and an RFP (Ret finger protein)-like domain
at the C-terminus, is required for its association with
transcriptional units of RNA polymerase II which is
mediated by a trimeric B box. In Xenopus oocyte, xNF7
has been identified as a nuclear microtubule-associated
protein (MAP) whose microtubule-bundling activity, but
not E3-ligase activity, contributes to microtubule
organization and spindle integrity. Bloodthirsty (bty)
is a novel gene identified in zebrafish and has been
shown to likely play a role in in regulation of the
terminal steps of erythropoiesis. TRIM72 has been shown
to perform a critical function in membrane repair
following acute muscle injury by nucleating the assembly
of the repair machinery at injury sites.
Length = 176
Score = 28.2 bits (63), Expect = 3.6
Identities = 30/139 (21%), Positives = 43/139 (30%), Gaps = 19/139 (13%)
Query: 86 STDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGW 145
S C+ G GF+ G H WEV + +G + + G L W
Sbjct: 40 SAVCVLGSRGFSSGRHYWEVEVGDKTSWR-----LGVVRESIDRKGECYLDPEQGF---W 91
Query: 146 DLGRNRLYHDSKNNTGLTYPTLLKPDETFVV---PDKFLVILDMDEGTLSFV-VDGQYLG 201
+G GL + P V+ P + V LD + G LSF +
Sbjct: 92 LVGLR-------QGKGLEADHCVPPPTPLVLAERPRRIGVYLDYEGGELSFYNAEAMCHI 144
Query: 202 VAFRGLKGRKLYPIVSAVW 220
F +YP
Sbjct: 145 YTFHARFPGPVYPFFYLGG 163
>gnl|CDD|240459 cd12879, SPRY3_RyR, SPRY domain 3 (SPRY3) of ryanodine receptor
(RyR). This SPRY domain (SPRY3) is the third of three
structural repeats in all three isoforms of the
ryanodine receptor (RyR), which are the major Ca2+
release channels in the membranes of sarcoplasmic
reticulum (SR). There are three RyR genes in mammals;
the skeletal RyR1, the cardiac RyR2 and the brain RyR3.
The three SPRY domains are located in the N-terminal
part of the cytoplasmic region of the RyRs, but no
specific function has been found for this third SPRY
domain of the RyRs.
Length = 151
Score = 28.0 bits (63), Expect = 3.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 183 ILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIV 216
++D G L+F +G+ G F+ G KL+P V
Sbjct: 103 LIDTATGLLTFTANGKETGTRFQVEPGTKLFPAV 136
Score = 28.0 bits (63), Expect = 3.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 236 ILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIV 269
++D G L+F +G+ G F+ G KL+P V
Sbjct: 103 LIDTATGLLTFTANGKETGTRFQVEPGTKLFPAV 136
>gnl|CDD|234393 TIGR03914, UDG_fam_dom, uracil-DNA glycosylase family domain. This
model represents a clade within the uracil-DNA
glycosylase superfamily. Among characterized proteins,
it most closely resembles the Thermus thermophilus
uracil-DNA glycosylase TTUDGA, which acts uracil
(deamidated cytosine) in both single-stranded DNA and
U/G pairs of double-stranded DNA. This domain may occur
either as a stand-alone protein or as the C-terminal
domain of a fusion with another domain that always pairs
with a particular radical-SAM family protein.
Length = 230
Score = 28.4 bits (64), Expect = 4.2
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 111 QRGTHAVVGVGTIDAPLHSVGYQ 133
T V G G DAPL VG Q
Sbjct: 61 CPATQTVFGEGPEDAPLMIVGEQ 83
>gnl|CDD|226466 COG3957, COG3957, Phosphoketolase [Carbohydrate transport and
metabolism].
Length = 793
Score = 28.5 bits (64), Expect = 4.9
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 19/104 (18%)
Query: 34 HQRPGRLDIILDM---------PPASRETQVKHAWNPEDRS-LNIFVKDDDKLTFHRHPV 83
HQ PG +D + + PP + + R+ +N+ V + P
Sbjct: 542 HQDPGFIDHVANKKSDIVRVYFPPDANTLLAVYDHCLRSRNKINVIVAS-------KQPR 594
Query: 84 AQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPL 127
Q + T G IW W++ G VV D P
Sbjct: 595 PQWLTMEQAEKHCTDGAGIW--EWASGDDGEPDVVMACAGDVPT 636
>gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional.
Length = 306
Score = 28.1 bits (63), Expect = 5.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 131 GYQSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYP 165
GY +V S+ QS DL R RL+ S+ TG+++P
Sbjct: 272 GYPKVVASSAQSHDEDLQR-RLWAVSEELTGVSFP 305
>gnl|CDD|225729 COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility
and secretion / Intracellular trafficking and
secretion].
Length = 835
Score = 28.0 bits (63), Expect = 6.5
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 128 HSVGYQSLVGSNDQSWGWDLGRNRLYHDSKNNTG 161
VG + D S + + +D+ + +G
Sbjct: 592 QQVGVSGTLLE-DGSLSYSVQGGYDSNDNASTSG 624
>gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional.
Length = 574
Score = 28.0 bits (63), Expect = 7.2
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 10 ADGVKTVNRESSAPFKPVIPRELAHQRPGRLDII-----LDMPPASRETQVK 56
A G+ + E ++ + R AH P +D++ L MPP + Q K
Sbjct: 495 ACGITGIRVEKASELDGALQRAFAHDGPALVDVVTAKQELAMPPQIKLEQAK 546
>gnl|CDD|183831 PRK12933, secD, preprotein translocase subunit SecD; Reviewed.
Length = 604
Score = 27.7 bits (62), Expect = 7.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 60 NPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRV 94
N +DR L + + +K F V Q+ +R R+
Sbjct: 209 NSDDRGLQLKLSQQEKTKFRNLTVQQNLQIMRSRI 243
>gnl|CDD|240480 cd12900, SPRY_PRY_Btn_TRIMs, PRY/SPRY domain in butyrophilins and
butyrophilins-like proteins, pyrin, as well as
tripartite motif-containing proteins (TRIM4, 5, 6, 11,
21, 22, 27, 30, 34, 38, 58, 60, 68, 75). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of pyrin, several tripartite motif-containing
proteins (TRIMs), as well as butyrophilin (Btns) and
butyrophilin-like (Btnl) family members, with the
exception of Btnl2. Btn and Btnl family members are
novel regulators of immune responses, with many of the
genes located within the MHC. They are implicated in
T-cell inhibition and modulation of epithelial cell-T
cell interactions. Expression of TRIM4 (also known as
ring finger protein 87 or RNF87) genes, including that
of CHCHD2 and PKIB, differs significantly in
Huntington's disease (HD), a prototypical genetic
disorder with delayed clinical onset, despite ubiquitous
expression of the mutated gene during development.
TRIM5-alpha is a cytoplasmic protein that recognizes the
incoming capsid (CA) protein of retroviruses and
potently inhibits virus infection in a species-specific
manner; it recognizes and interacts directly with HIV
CA, thus disrupting the ordered process of viral
uncoating, and subsequent reverse transcription and
virus replication, while species-specific differences
are determined by sequence variations within the
C-terminal B30.2/PRYSPRY domain. TRIM6 regulates the
transcriptional activity of proto-oncogene product Myc
during the maintenance of ES cell pluripotency,
suggesting that TRIM6 functions as a novel regulator for
Myc-mediated transcription in ES cells. TRIM11 is
involved in the function and development of the nervous
system and is overexpressed in high-grade gliomas and
promotes proliferation, invasion, migration and glial
tumor growth. TRIM21 (also known as RO52, SSA1 or RNF81)
is a major autoantigen in autoimmune diseases such as
rheumatoid arthritis, systemic lupus erythematosus, and
Sjorgen's syndrome. TRIM21 interacts with connexin 43
(Cx43) providing mechanisms for down-regulation of gap
junction (GJ) intercellular communication thus impacting
a variety of physiological processes. Expression of the
TRIM34 gene is up-regulated by interferon and is mapped
to chromosome 11p15, where it resides within a TRIM gene
cluster. TRIM30 alpha negatively regulates Toll-like
receptor (TLR)-mediated NF-kappa B activation by
targeting degradation of adaptors TAB2 and TAB3 that are
in complex with kinase TAK1. TRIM5 gene's closest human
paralogs are TRIM6, TRIM22 and TRIM34. It has also been
shown that the RBCC domains of TRIM6, 21 and 34 can
functionally replace the corresponding domains of
TRIM5alpha with respect to inhibition of HIV-1 infection
through binding of the chimeras to HIV-1 capsid
complexes. TRIM27 (also known as Ret finger protein, RFP
or RNF76) negatively regulates CD4 T-cells by
ubiquitinating and inhibiting the class II
phosphatidylinositol 3 kinase C2beta (PI3K-C2beta), a
kinase critical for KCa3.1 channel activation. It is
also a specific binding partner for NOD2, the
nucleotide-binding domain and leucine-rich repeat
containing gene family (NLR) member 2 involved in
mediating antimicrobial responses. It negatively
regulates NOD2-mediated signaling by degrading NOD2, and
therefore a potential target for therapeutic
intervention in NOD2-associated diseases such as
early-onset sarcoidosis and Blau syndrome. TRIM38
negatively regulates Toll-like receptor 3
(TLR3)-mediated type I interferon signaling by targeting
TIR domain-containing adaptor inducing IFN-beta (TRIF).
TRIM60 (also known as RNF33 or ring finger protein 33)
interacts with kinesin-2 family members 3A (KIF3A) and
3B (KIF3B) motor proteins known to transport cargos
along the microtubule, possibly contributing to
kinesin-dependent mobilization of specific cargos along
the microtubule. TRIM68 regulates ligand-dependent
transcription of androgen receptor in prostate cancer
cells; its overexpression causes an increase in
prostate-specific antigen (PSA), a reliable diagnostic
marker for prostate cancer, making TRIM68 a likely novel
diagnostic tool and a potentially therapeutic target.
The PRY/SPRY domain of pyrin, which is mutated in
familial Mediterranean fever patients, interacts with
inflammasome components and inhibits proIL-1beta
processing.
Length = 173
Score = 27.1 bits (61), Expect = 8.4
Identities = 36/167 (21%), Positives = 49/167 (29%), Gaps = 71/167 (42%)
Query: 54 QVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRG 113
V++ +D D+ F +P C+ G GFT G H WEV
Sbjct: 24 SVRYGDTRQDLP-------DNPERFDSYP------CVLGSPGFTSGRHYWEVE------- 63
Query: 114 THAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLG-------RN--------------RL 152
VG W LG R L
Sbjct: 64 ------VGD-------------------KTEWALGVCRESVSRKGKVPLSPENGFWVIGL 98
Query: 153 YHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF--VVDG 197
+ S+ + PT L V P + + LD + G +SF V DG
Sbjct: 99 QNGSEYWAFTSPPTPLSLK---VPPRRVGIFLDYEAGEVSFYNVTDG 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.141 0.447
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,183,574
Number of extensions: 1471967
Number of successful extensions: 1084
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1055
Number of HSP's successfully gapped: 71
Length of query: 292
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 196
Effective length of database: 6,679,618
Effective search space: 1309205128
Effective search space used: 1309205128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)