RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8037
(292 letters)
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription
regulation, transcription; 1.79A {Homo sapiens} PDB:
3f2o_A 2fnj_A 2v24_A 2ihs_A
Length = 212
Score = 268 bits (685), Expect = 6e-91
Identities = 146/206 (70%), Positives = 175/206 (84%)
Query: 29 PRELAHQRPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTD 88
+ L + +P RLD++LDMPP S + Q+ H+WN DRSLN+FVK+DDKL FHRHPVAQSTD
Sbjct: 5 LQGLDYCKPTRLDLLLDMPPVSYDVQLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTD 64
Query: 89 CIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLG 148
IRG+VG+T+G H+W++ W+ RQRGTHAVVGV T DAPLHSVGY +LVG+N +SWGWDLG
Sbjct: 65 AIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLG 124
Query: 149 RNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRGLK 208
RNRLYHD KN TYP L+PDETF+VPD FLV LDMD+GTLSF+VDGQY+GVAFRGLK
Sbjct: 125 RNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLK 184
Query: 209 GRKLYPIVSAVWGHCEITMKYIGGLD 234
G+KLYP+VSAVWGHCEI M+Y+ GLD
Sbjct: 185 GKKLYPVVSAVWGHCEIRMRYLNGLD 210
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR
{Mus musculus} SCOP: b.29.1.22
Length = 226
Score = 256 bits (656), Expect = 2e-86
Identities = 108/218 (49%), Positives = 138/218 (63%), Gaps = 4/218 (1%)
Query: 20 SSAPFKPVIPRELAHQ--RPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLT 77
SSA + L P L+ +L PP Q H WNP+D S NI VK+ L
Sbjct: 2 SSARQSTPTSQALYSDFSPPEGLEELLSAPPPDLVAQRHHGWNPKDCSENIDVKEGG-LC 60
Query: 78 FHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVG 137
F R PVAQSTD +RG+ G+++G H WE+ W QRGTHAVVGV T APL + Y +L+G
Sbjct: 61 FERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALLG 120
Query: 138 SNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDG 197
SN +SWGWD+GR +LYH SK YP + E VVP++ LV+LDM+EGTL + + G
Sbjct: 121 SNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQG-EQLVVPERLLVVLDMEEGTLGYSIGG 179
Query: 198 QYLGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLDL 235
YLG AFRGLKGR LYP VSAVWG C++ ++Y+G +
Sbjct: 180 TYLGPAFRGLKGRTLYPSVSAVWGQCQVRIRYMGERRV 217
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus,
apoptosis, UBL conjugation pathwayc, CL transcription
regulation, transcription, phosphoprotein; 1.80A {Homo
sapiens} PDB: 3ek9_A
Length = 217
Score = 249 bits (638), Expect = 1e-83
Identities = 103/197 (52%), Positives = 130/197 (65%), Gaps = 2/197 (1%)
Query: 35 QRPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRV 94
P L+ +L PP Q +H WNP+D S NI VK+ L F R PVAQSTD RG+
Sbjct: 22 SMPEGLEELLSAPPPDLGAQRRHGWNPKDCSENIEVKEGG-LYFERRPVAQSTDGARGKR 80
Query: 95 GFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYH 154
G+++G H WE+ W QRGTHAVVGV T APL + Y +L+GSN +SWGWD+GR +LYH
Sbjct: 81 GYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAALLGSNSESWGWDIGRGKLYH 140
Query: 155 DSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYP 214
SK YP E VP++ LV+LDM+EGTL + + G YLG AFRGLKGR LYP
Sbjct: 141 QSKGPGAPQYPA-GTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRGLKGRTLYP 199
Query: 215 IVSAVWGHCEITMKYIG 231
VSAVWG C++ ++Y+G
Sbjct: 200 AVSAVWGQCQVRIRYLG 216
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription,
SPRY domain, prote binding, histone methylation, RBBP5,
DPY-30, nuclear; 2.07A {Homo sapiens}
Length = 213
Score = 90.3 bits (224), Expect = 7e-22
Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 27/177 (15%)
Query: 59 WNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVV 118
DR+ + + DD+LT + +R G KG +E+ T A +
Sbjct: 15 LALHDRAPQLKI-SDDRLTVVGE---KGYSMVRASHGVRKGAWYFEITVDEMPPDTAARL 70
Query: 119 GVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPD 178
G L Q+ +G + S+ W + +H + G Y + D
Sbjct: 71 GWSQPLGNL-----QAPLGYDKFSYSWRSKKGTKFH---QSIGKHY------SSGYGQGD 116
Query: 179 KFLVILDMDEGTLSFV--------VDGQYLGVAFRGLKGRKLYPIVSAVWGHCEITM 227
+++ E T+S +G GVA++ + +P +S ++ C +++
Sbjct: 117 VLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKDIFEGVYFPAIS-LYKSCTVSI 172
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on
protein structural and functional analyses; 2.00A {Homo
sapiens}
Length = 171
Score = 86.1 bits (213), Expect = 1e-20
Identities = 25/156 (16%), Positives = 44/156 (28%), Gaps = 9/156 (5%)
Query: 63 DRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGT 122
S + D T H + C TK + +EV VG+
Sbjct: 4 GSSGFKHILVD-GDTLSYHGNSGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVP 62
Query: 123 IDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLV 182
L G S + +LY+ G + + + + V
Sbjct: 63 QYYSL-----DHQPGWLPDSVAYHADDGKLYNGRA--KGRQFGSKCNSGDRIGCGIEP-V 114
Query: 183 ILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIVSA 218
D+ + F +G+ +G + L+P V
Sbjct: 115 SFDVQTAQIFFTKNGKRVGSTIMPMSPDGLFPAVGM 150
Score = 44.9 bits (106), Expect = 6e-06
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 230 IGGLDLILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPIVSA 271
G + D+ + F +G+ +G + L+P V
Sbjct: 109 CGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMSPDGLFPAVGM 150
>2lm3_A TRIM5alpha, tripartite motif-containing protein 5; ligase; NMR
{Macaca mulatta}
Length = 208
Score = 41.9 bits (99), Expect = 8e-05
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 23/140 (16%)
Query: 89 CIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQ--SLVGSNDQSWG-- 144
+ G T G H WEV S + + ++GV + W
Sbjct: 62 GVLGSQSITSGKHYWEVDVS---KKSAWILGVCAGFQSDAMYNIEQNENYQPKYGYWVIG 118
Query: 145 -WDLGRNRLYHDSKNNTGLT-YPTLLKPDETFVVPDKFLVILDMDEGTLSF--VVDGQYL 200
+ + ++ D ++T + L PD+ V +D + T+SF + + +L
Sbjct: 119 LQEGVKYSVFQDGSSHTPFAPFIVPLSVIIC---PDRVGVFVDYEACTVSFFNITNHGFL 175
Query: 201 -----GVAFRGLKGRKLYPI 215
+F ++P
Sbjct: 176 IYKFSQCSFSK----PVFPY 191
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY,
TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo
sapiens}
Length = 193
Score = 39.1 bits (92), Expect = 6e-04
Identities = 29/143 (20%), Positives = 40/143 (27%), Gaps = 26/143 (18%)
Query: 89 CIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSV---GYQSLVGSNDQSW-- 143
+ ++G H WEV +GV G + W
Sbjct: 56 AVVAHQQLSEGEHYWEVDVG---DKPRWALGVIA-----AEAPRRGRLHA-VPSQGLWLL 106
Query: 144 GWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF--VVDGQYLG 201
G G+ H L P+ P + + L +G LSF D L
Sbjct: 107 GLREGKILEAHVEAKEP----RALRSPERR---PTRIGLYLSFGDGVLSFYDASDADALV 159
Query: 202 V--AFRGLKGRKLYPIVSAVWGH 222
AF R +YP V H
Sbjct: 160 PLFAFHERLPRPVYPFFD-VCWH 181
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.002
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 31/99 (31%)
Query: 200 LGVAFRGLKGRKLYPIVSAVWGHCEITMKYIGGLD-------LILDMDEGTLSFVVDG-- 250
L + F G KG+++ SA M + +D + +++E + S+
Sbjct: 1672 LTIHFGGEKGKRIRENYSA--------MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 251 ------QY-------LGVA-FRGLKGRKLYPIVSAVWGH 275
Q+ + A F LK + L P + GH
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Score = 36.2 bits (83), Expect = 0.015
Identities = 37/251 (14%), Positives = 61/251 (24%), Gaps = 104/251 (41%)
Query: 43 ILDMPPASRETQVKHAWN---PEDRSLNI--------FV-----KDDDKLTFHRHPVAQS 86
I ++ + V N P + + I V + L
Sbjct: 341 ISNLTQEQVQDYVNKT-NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 87 TDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWD 146
+ + R+ F +R + +P HS
Sbjct: 400 SGLDQSRIPF-------------SERKLKFSNRFLPVASPFHS----------------- 429
Query: 147 LGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVA--- 203
LL P L+ D+ + +SF + + + +
Sbjct: 430 -------------------HLLVP----ASD---LINKDLVKNNVSF--NAKDIQIPVYD 461
Query: 204 ------FRGLKGRKLYPIVSAV------WGHCEITMKYIGGLDLILDMDEGTLSFV---- 247
R L G IV + W E T ++ ILD G S +
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKW---ETTTQF--KATHILDFGPGGASGLGVLT 516
Query: 248 ---VDGQYLGV 255
DG GV
Sbjct: 517 HRNKDGT--GV 525
Score = 32.7 bits (74), Expect = 0.17
Identities = 46/264 (17%), Positives = 76/264 (28%), Gaps = 104/264 (39%)
Query: 35 QRPGR-LDIILDMPPASRETQVKHAWNPEDR--------SLNIFVKDDDK-LTFHRHPVA 84
Q G +D+ A+++ WN D S+ V ++ LT H
Sbjct: 1627 QEQGMGMDL-YKTSKAAQD-----VWNRADNHFKDTYGFSILDIVINNPVNLTIH----- 1675
Query: 85 QSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWG 144
G KG I R+ A++ +D L + + + S+
Sbjct: 1676 ---------FGGEKGKRI-------REN-YSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 145 WDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAF 204
+ + L + T T P L + AF
Sbjct: 1719 FRSEKGLL-----SATQFTQPALT---------------------LMEKA--------AF 1744
Query: 205 RGLKGRKLYPIVSAVWGHCEITMKYIGGLDLILDMDE--------GTLSF--VVD----- 249
LK + L P + GH +G E +S +V+
Sbjct: 1745 EDLKSKGLIPADATFAGHS------LG---------EYAALASLADVMSIESLVEVVFYR 1789
Query: 250 GQYLGVAF-RGLKGRKLYPIVSAV 272
G + VA R GR Y ++ A+
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMI-AI 1812
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP,
antiretroviral, HIV capsid, ligase; 1.55A {Macaca
mulatta}
Length = 186
Score = 36.9 bits (86), Expect = 0.003
Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 21/139 (15%)
Query: 89 CIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQ--SLVGSNDQSWG-- 144
+ G T G H WEV S + + ++GV + W
Sbjct: 40 GVLGSQSITSGKHYWEVDVS---KKSAWILGVCAGFQSDAMYNIEQNENYQPKYGYWVIG 96
Query: 145 -WDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF--VVDGQYL- 200
+ + ++ D ++T + + PD+ V +D + T+SF + + +L
Sbjct: 97 LQEGVKYSVFQDGSSHTPFAPFIVPLSVI--ICPDRVGVFVDYEACTVSFFNITNHGFLI 154
Query: 201 ----GVAFRGLKGRKLYPI 215
+F ++P
Sbjct: 155 YKFSQCSFSK----PVFPY 169
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll
beta-sandwich fold, unknown function; 2.52A {Homo
sapiens} SCOP: b.29.1.22
Length = 201
Score = 34.5 bits (80), Expect = 0.021
Identities = 28/138 (20%), Positives = 39/138 (28%), Gaps = 34/138 (24%)
Query: 89 CIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSV---GYQSLVGSNDQSW-- 143
C+ G FT G H WEV VGV SV G L S
Sbjct: 53 CVLGTPRFTSGRHYWEVDVG---TSQVWDVGVCK-----ESVNRQGKIEL-SSEHGFLTV 103
Query: 144 GWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF--VVDGQYL- 200
G G+ T L + + LD+ +++F V DG ++
Sbjct: 104 GCREGKVFAASTVP-------MTPLWVSPQ---LHRVGIFLDVGMRSIAFYNVSDGCHIY 153
Query: 201 ---GVAFRGLKGRKLYPI 215
+ P
Sbjct: 154 TFIEIPVCE----PWRPF 167
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton,
actin-binding inflammatory response, metal-binding,
signaling protein; 1.35A {Homo sapiens}
Length = 191
Score = 32.5 bits (75), Expect = 0.080
Identities = 29/145 (20%), Positives = 45/145 (31%), Gaps = 35/145 (24%)
Query: 89 CIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSV---GYQSLVGSNDQSWGW 145
+ G F G WEV T ++G S+ G +L + W
Sbjct: 56 IVLGSPSFLSGRRYWEVEVG---DKTAWILGACK-----TSISRKGNMTL-SPENGYWVV 106
Query: 146 DLGRNRLY--HDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF--VVDGQYL- 200
+ + Y PT L E P + + +D G++SF V ++
Sbjct: 107 IMMKENEYQASSVP-------PTRLLIKEP---PKRVGIFVDYRVGSISFYNVTARSHIY 156
Query: 201 ---GVAFRGLKGRKLYPIVSAVWGH 222
+F G L PI S
Sbjct: 157 TFASCSFSG----PLQPIFS-PGTR 176
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding,
tripartite motif (TRIM) protein, SPRY systemic lupus
erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB:
2vol_B* 2iwg_B*
Length = 188
Score = 30.6 bits (70), Expect = 0.33
Identities = 27/146 (18%), Positives = 42/146 (28%), Gaps = 37/146 (25%)
Query: 89 CIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSV---GYQSLVGSNDQSW-- 143
+ G F+ G WEV + + +GV SV G SL + W
Sbjct: 52 MVLGAQRFSSGKMYWEVDVT---QKEAWDLGVCR-----DSVQRKGQFSL-SPENGFWTI 102
Query: 144 GWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF--VVDGQ--- 198
T L P + + +D + G +SF + D
Sbjct: 103 WLWQDSYEAGTSP--------QTTLHIQVP---PCQIGIFVDYEAGVVSFYNITDHGSLI 151
Query: 199 --YLGVAFRGLKGRKLYPIVSAVWGH 222
+ F G L P + V +
Sbjct: 152 YTFSECVFAG----PLRPFFN-VGFN 172
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Length = 114
Score = 27.8 bits (62), Expect = 2.0
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 32 LAHQRPGRLDIILDMPPASRETQVKH---AWNPEDRSLNIFVKDDDKLTFHRHPVAQSTD 88
L H G ++ +P + TQ + + + ++ H +
Sbjct: 4 LPHLSSG--EVASVLPLGKQLTQTPSAALFKEHRLEVMRMVLPAGKQVGSHSVAGPSTIQ 61
Query: 89 CIRGRVGFTKGFHIWEVH 106
C+ G V +H
Sbjct: 62 CLEGEVEIGVDGAQRRLH 79
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 27.5 bits (62), Expect = 5.1
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 46 MPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFH 79
+ R K +P + IFV D+ KLT H
Sbjct: 194 LSKEIRPVCRKFMQDPME----IFVDDETKLTLH 223
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 27.2 bits (61), Expect = 6.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 36 RPGRLDIILDMPPASRETQVK 56
RPGRLD ++ +P +++V
Sbjct: 173 RPGRLDQLIYIPLPDEKSRVA 193
>1i82_A Xylanase A, endo-1,4-beta-xylanase A; cellobiose complex,
hydrolase; HET: BGC; 1.90A {Thermotoga maritima} SCOP:
b.1.9.2 PDB: 1i8a_A* 1i8u_A
Length = 189
Score = 26.8 bits (59), Expect = 6.8
Identities = 14/126 (11%), Positives = 37/126 (29%), Gaps = 19/126 (15%)
Query: 42 IILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIR--------GR 93
+ + + +V+ W+ + L + D + + D +
Sbjct: 31 VAMGSLDKNATAKVRVLWD--ENYLYVLAIVKDPVLNKDNSNPWEQDSVEIFIDENNHKT 88
Query: 94 VGFTKGFHIWEVHWSARQR-GTHAVVGVGTIDAPLHSVGY--------QSLVGSNDQSWG 144
+ + V++ Q GT L GY +++ + + G
Sbjct: 89 GYYEDDDAQFRVNYMNEQTFGTGGSPARFKTAVKLIEGGYIVEAAIKWKTIKPTPNTVIG 148
Query: 145 WDLGRN 150
+++ N
Sbjct: 149 FNIQVN 154
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 27.1 bits (60), Expect = 9.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 36 RPGRLDIILDMPPASRETQVK 56
RPGRLD ++ +P +++V
Sbjct: 635 RPGRLDQLIYIPLPDEKSRVA 655
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.447
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,718,690
Number of extensions: 290772
Number of successful extensions: 532
Number of sequences better than 10.0: 1
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 32
Length of query: 292
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,105,140
Effective search space: 816922860
Effective search space used: 816922860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)