RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8037
(292 letters)
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 244 bits (623), Expect = 6e-82
Identities = 162/199 (81%), Positives = 182/199 (91%)
Query: 36 RPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVG 95
+P R+DI+LDMPPASR+ Q+KH+WN EDRSLNIFVK+DDKLTFHRHPVAQSTDCIRG+VG
Sbjct: 3 KPARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVG 62
Query: 96 FTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHD 155
TKG HIWE++W RQRGTHAVVGV T DAPLHSVGYQSLVGS +QSWGWDLGRN+LYHD
Sbjct: 63 LTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHD 122
Query: 156 SKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRGLKGRKLYPI 215
SKN G+TYP +LK DE F+VPDKFLV LDMDEGTLSF+VD QYLG+AFRGL+G+KLYPI
Sbjct: 123 SKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPI 182
Query: 216 VSAVWGHCEITMKYIGGLD 234
VSAVWGHCEITM+YIGGLD
Sbjct: 183 VSAVWGHCEITMRYIGGLD 201
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 206 bits (525), Expect = 3e-67
Identities = 105/206 (50%), Positives = 133/206 (64%), Gaps = 4/206 (1%)
Query: 29 PRELAH--QRPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQS 86
+ L P L+ +L PP Q H WNP+D S NI VK+ L F R PVAQS
Sbjct: 5 SQALYSDFSPPEGLEELLSAPPPDLVAQRHHGWNPKDCSENIDVKEGG-LCFERRPVAQS 63
Query: 87 TDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWD 146
TD +RG+ G+++G H WE+ W QRGTHAVVGV T APL + Y +L+GSN +SWGWD
Sbjct: 64 TDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALLGSNSESWGWD 123
Query: 147 LGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAFRG 206
+GR +LYH SK YP E VVP++ LV+LDM+EGTL + + G YLG AFRG
Sbjct: 124 IGRGKLYHQSKGLEAPQYPAGP-QGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRG 182
Query: 207 LKGRKLYPIVSAVWGHCEITMKYIGG 232
LKGR LYP VSAVWG C++ ++Y+G
Sbjct: 183 LKGRTLYPSVSAVWGQCQVRIRYMGE 208
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 188
Score = 45.0 bits (106), Expect = 2e-06
Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 44/192 (22%)
Query: 39 RLDIILDMPPASRE-------TQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIR 91
++D+ D+ A+ + ++R + F C+
Sbjct: 9 QVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRK-------EQAERFDTAL------CVL 55
Query: 92 GRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNR 151
G FT G H WEV VGV SV Q + + + +G
Sbjct: 56 GTPRFTSGRHYWEVDVG---TSQVWDVGVCK-----ESVNRQGKIELSSEHGFLTVGCRE 107
Query: 152 LYHDSKNNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSF--VVDGQYL----GVAFR 205
+ + +T + + + LD+ +++F V DG ++ +
Sbjct: 108 GKVFAASTVPMTPLWVSPQ------LHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVC 161
Query: 206 GLKGRKLYPIVS 217
P +
Sbjct: 162 E----PWRPFFA 169
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 38.1 bits (88), Expect = 4e-04
Identities = 35/168 (20%), Positives = 55/168 (32%), Gaps = 30/168 (17%)
Query: 53 TQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQR 112
QV+ + ++ F +P + G F G H WEV +
Sbjct: 21 RQVRLGDTQQSIP-------GNEERFDSYP------MVLGAQHFHSGKHYWEVDVT---G 64
Query: 113 GTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDLGRNRLYHDSKNNTGLTYPTLLKPDE 172
+GV SV + + +S W + L++ K G T L
Sbjct: 65 KEAWDLGVCR-----DSVRRKGHFLLSSKSGFWTIW---LWNKQKYEAGTYPQTPLHLQ- 115
Query: 173 TFVVPDKFLVILDMDEGTLSF--VVDGQYLGVAFRGLK-GRKLYPIVS 217
V P + + LD + G +SF + D L +F L P S
Sbjct: 116 --VPPCQVGIFLDYEAGMVSFYNITDHGSLIYSFSECAFTGPLRPFFS 161
>d1i8aa_ b.1.9.2 (A:) Xylanase 10A {Thermotoga maritima [TaxId:
2336]}
Length = 189
Score = 29.4 bits (65), Expect = 0.33
Identities = 14/135 (10%), Positives = 39/135 (28%), Gaps = 19/135 (14%)
Query: 47 PPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCI--------RGRVGFTK 98
+ +V+ W+ + L + D + + D + +
Sbjct: 36 LDKNATAKVRVLWD--ENYLYVLAIVKDPVLNKDNSNPWEQDSVEIFIDENNHKTGYYED 93
Query: 99 GFHIWEVHWSARQR-GTHAVVGVGTIDAPLHSVGY--------QSLVGSNDQSWGWDLGR 149
+ V++ Q GT L GY +++ + + G+++
Sbjct: 94 DDAQFRVNYMNEQTFGTGGSPARFKTAVKLIEGGYIVEAAIKWKTIKPTPNTVIGFNIQV 153
Query: 150 NRLYHDSKNNTGLTY 164
N + +++
Sbjct: 154 NDANEKGQRVGIISW 168
>d1ifwa_ a.144.1.1 (A:) poly(A) binding protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 26.7 bits (59), Expect = 1.2
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 209 GRKLYPIVSAVWGHCEITMKYIGGLDLILDMDEGTL 244
G +LY VSA + E K G +ILD+ +
Sbjct: 25 GEQLYKKVSAKTSNEEAAGKITG---MILDLPPQEV 57
>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 195
Score = 26.6 bits (58), Expect = 2.7
Identities = 20/194 (10%), Positives = 41/194 (21%), Gaps = 23/194 (11%)
Query: 90 IRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQSLVGSNDQSWGWDL-G 148
I ++ K W G + L + + +L D + L
Sbjct: 15 IGNQLYLFKDGKYWRFS-----EGRGSRPQGPF----LIADKWPALPRKLDSVFEEPLSK 65
Query: 149 RNRLYHDSK----NNTGLTYPTLLKPDETFVVPDKFLVILDMDEGTLSFVVDGQYLGVAF 204
+ + + + P L + L G + +
Sbjct: 66 KLFFFSGRQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGRRLWRFDV 125
Query: 205 RGLKGRKLYP-IVSAVWGHCEITMKYIGGLDLILDMDEGTLSFVVDGQYLGVAFRGLKGR 263
+ V ++ + F D Y V+ R +
Sbjct: 126 KAQMVDPRSASEVDRMFPGVP------LDTHDVF-QFREKAYFCQDRFYWRVSSRSELNQ 178
Query: 264 KLYPI-VSAVWGHC 276
V+ C
Sbjct: 179 VDQVGYVTYDILQC 192
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Length = 509
Score = 25.9 bits (56), Expect = 7.9
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 143 WGWDLGRNRLYHDSKNNTGLTYPTLLKPDETFVVPDKFLVIL 184
+ W G ++ + + + P + ++ P V+L
Sbjct: 419 FFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLL 460
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.141 0.447
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,154,862
Number of extensions: 54952
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 14
Length of query: 292
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 207
Effective length of database: 1,240,546
Effective search space: 256793022
Effective search space used: 256793022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)