BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8038
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
pdb|3M95|B Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
Length = 125
Score = 211 bits (538), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/153 (71%), Positives = 114/153 (74%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MKFQYKEEH FEKRKAEGEKIRRKYPDRVPVIVEKAPKAR+GDLDKKKYLVPSDLTVGQF
Sbjct: 9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 68
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
YFLIRKR+ LRPEDALFFFVNNVIPPTSATMGSLYQ
Sbjct: 69 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQ------------------------ 104
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
EHH+EDFFLYIA+SDENVYG
Sbjct: 105 -------------EHHDEDFFLYIAFSDENVYG 124
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated
Protein, Gabarap
Length = 119
Score = 205 bits (522), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 107/153 (69%), Positives = 112/153 (73%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MKF YKEEHPFEKR++EGEKIR+KYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
Sbjct: 3 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 62
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
YFLIRKR+ LR EDALFFFVNNVIPPTSATMG LYQ
Sbjct: 63 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQ------------------------ 98
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
EHHEEDFFLYIAYSDE+VYG
Sbjct: 99 -------------EHHEEDFFLYIAYSDESVYG 118
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated
Protein Gabarap
pdb|3D32|A Chain A, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3D32|B Chain B, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3DOW|A Chain A, Complex Structure Of Gaba Type A Receptor Associated
Protein And Its Binding Epitope On Calreticulin
Length = 119
Score = 205 bits (521), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/153 (69%), Positives = 112/153 (73%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MKF YKEEHPFEKR++EGEKIR+KYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
Sbjct: 3 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 62
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
YFLIRKR+ LR EDALFFFVNNVIPPTSATMG LYQ
Sbjct: 63 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQ------------------------ 98
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
EHHEEDFFLYIAYSDE+VYG
Sbjct: 99 -------------EHHEEDFFLYIAYSDESVYG 118
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap
pdb|1KLV|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
pdb|1KM7|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
Length = 117
Score = 205 bits (521), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/153 (69%), Positives = 112/153 (73%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MKF YKEEHPFEKR++EGEKIR+KYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
Sbjct: 1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
YFLIRKR+ LR EDALFFFVNNVIPPTSATMG LYQ
Sbjct: 61 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQ------------------------ 96
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
EHHEEDFFLYIAYSDE+VYG
Sbjct: 97 -------------EHHEEDFFLYIAYSDESVYG 116
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure
Length = 119
Score = 185 bits (469), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/151 (63%), Positives = 107/151 (70%), Gaps = 37/151 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
KFQYKE+HPFE RK EGEKIR+KYPDRVPVIVEKAPKAR+ DLDK+KYLVPSDLTVGQF
Sbjct: 5 FKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 64
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
YFLIRKR+ LRPEDALFFFVNN IPPTSATMG LY+
Sbjct: 65 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYE------------------------ 100
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENV 151
++HEED+FLY+AYSDE+V
Sbjct: 101 -------------DNHEEDYFLYVAYSDESV 118
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
pdb|2R2Q|B Chain B, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
Length = 110
Score = 179 bits (454), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 93/146 (63%), Positives = 103/146 (70%), Gaps = 37/146 (25%)
Query: 3 FQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYF 62
FQYKE+HPFE RK EGEKIR+KYPDRVPVIVEKAPKAR+ DLDK+KYLVPSDLTVGQFYF
Sbjct: 2 FQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYF 61
Query: 63 LIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLT 122
LIRKR+ LRPEDALFFFVNN IPPTSATMG LY+
Sbjct: 62 LIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYE-------------------------- 95
Query: 123 VGQFYFLIRKREHHEEDFFLYIAYSD 148
++HEED+FLY+AYSD
Sbjct: 96 -----------DNHEEDYFLYVAYSD 110
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8
Length = 116
Score = 134 bits (337), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 93/153 (60%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MK +K E+PFEKRKAE E+I ++P+R+PVI EKA K+ I ++DK+KYLVP+DLTVGQF
Sbjct: 1 MKSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF 60
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
++IRKR+ L PE A+F FVN+ +PPT+A M ++YQ
Sbjct: 61 VYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQ------------------------ 96
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
EH ++D FLY+ YS EN +G
Sbjct: 97 -------------EHKDKDGFLYVTYSGENTFG 116
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex
Length = 117
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 93/153 (60%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MK +K E+PFEKRKAE E+I ++P+R+PVI EKA K+ I ++DK+KYLVP+DLTVGQF
Sbjct: 2 MKSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF 61
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
++IRKR+ L PE A+F FVN+ +PPT+A M ++YQ
Sbjct: 62 VYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQ------------------------ 97
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
EH ++D FLY+ YS EN +G
Sbjct: 98 -------------EHKDKDGFLYVTYSGENTFG 117
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|B Chain B, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 119
Score = 134 bits (336), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 93/153 (60%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MK +K E+PFEKRKAE E+I ++P+R+PVI EKA K+ I ++DK+KYLVP+DLTVGQF
Sbjct: 4 MKSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF 63
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
++IRKR+ L PE A+F FVN+ +PPT+A M ++YQ
Sbjct: 64 VYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQ------------------------ 99
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
EH ++D FLY+ YS EN +G
Sbjct: 100 -------------EHKDKDGFLYVTYSGENTFG 119
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex
Length = 118
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 92/153 (60%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MK +K E+PFEKRKAE E+I ++ +R+PVI EKA K+ I ++DK+KYLVP+DLTVGQF
Sbjct: 3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF 62
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
++IRKR+ L PE A+F FVN+ +PPT+A M ++YQ
Sbjct: 63 VYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQ------------------------ 98
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
EH ++D FLY+ YS EN +G
Sbjct: 99 -------------EHKDKDGFLYVTYSGENTFG 118
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8
Length = 119
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 92/153 (60%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MK +K E+PFEKRKAE E+I ++ +R+PVI EKA K+ I ++DK+KYLVP+DLTVGQF
Sbjct: 3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF 62
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
++IRKR+ L PE A+F FVN+ +PPT+A M ++YQ
Sbjct: 63 VYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQ------------------------ 98
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
EH ++D FLY+ YS EN +G
Sbjct: 99 -------------EHKDKDGFLYVTYSGENTFG 118
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|D Chain D, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|3VXW|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg8
Complexed With Atg32 Aim
Length = 119
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 92/153 (60%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MK +K E+PFEKRKAE E+I ++ +R+PVI EKA K+ I ++DK+KYLVP+DLTVGQF
Sbjct: 4 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF 63
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
++IRKR+ L PE A+F FVN+ +PPT+A M ++YQ
Sbjct: 64 VYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQ------------------------ 99
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
EH ++D FLY+ YS EN +G
Sbjct: 100 -------------EHKDKDGFLYVTYSGENTFG 119
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
Length = 117
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 87/153 (56%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MK+ +KE+H E R E KIR KYPDRVPVIVEK ++I D+DK+KYLVPSD+TV QF
Sbjct: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
++IRKR+QL E A+F FV+ +P +S TMG LY+
Sbjct: 61 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYE------------------------ 96
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
+ +ED FLY+AYS EN +G
Sbjct: 97 -------------KEKDEDGFLYVAYSGENTFG 116
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8
pdb|3H9D|B Chain B, Crystal Structure Of Trypanosoma Brucei Atg8
Length = 119
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 81/150 (54%), Gaps = 37/150 (24%)
Query: 4 QYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFL 63
+YK H FE R+++ K+R ++PDR+P+I EK + IG+LD+ K+LVPSDLTVGQF +
Sbjct: 7 KYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSV 66
Query: 64 IRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTV 123
+RKRVQL E ALF + N+ + P+SA M +Y
Sbjct: 67 LRKRVQLEAESALFVYTNDTVLPSSAQMADIYS--------------------------- 99
Query: 124 GQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
++ +ED FLY+ YS E +G
Sbjct: 100 ----------KYKDEDGFLYMKYSGEATFG 119
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 97 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYGAS 155
+I EK + IG+LD+ K+LVPSDLTVGQF ++RKR E + L++ Y+++ V +S
Sbjct: 34 IICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFV-YTNDTVLPSS 91
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|B Chain B, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|C Chain C, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
Length = 128
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 65/101 (64%), Gaps = 9/101 (8%)
Query: 6 KEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIR 65
K+E FE R AE KIR KYP+R+PV++E+A ++ + ++KKK+LVP ++ VG+F F++
Sbjct: 9 KDEVSFENRVAETHKIRSKYPNRIPVVIERANRSNLPIIEKKKFLVPMNMLVGEFKFILH 68
Query: 66 KRV---------QLRPEDALFFFVNNVIPPTSATMGSLYQV 97
+ + +L E ++ FVNN++P T M LY++
Sbjct: 69 QHINQSAYGSNMKLFRERTIYLFVNNIVPKTGLLMQDLYEM 109
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 28/36 (77%)
Query: 97 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRK 132
V++E+A ++ + ++KKK+LVP ++ VG+F F++ +
Sbjct: 34 VVIERANRSNLPIIEKKKFLVPMNMLVGEFKFILHQ 69
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c
Length = 128
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 43/152 (28%)
Query: 9 HPFEKRKA------EGEKIRRKYPDRVPVIVEKAPKAR-IGDLDKKKYLVPSDLTVGQFY 61
PF++RK+ E IR K+P+++PV+VE+ P+ + LDK K+LVP +LT+ QF
Sbjct: 13 RPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFL 72
Query: 62 FLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDL 121
+IR R+ LR +A + VNN K LV
Sbjct: 73 SIIRSRMVLRATEAFYLLVNN-------------------------------KSLVSMSA 101
Query: 122 TVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
T+ + Y R++ +ED F+Y+ Y+ + +G
Sbjct: 102 TMAEIY-----RDYKDEDGFVYMTYASQETFG 128
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
pdb|3ECI|B Chain B, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
Length = 122
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 37/150 (24%)
Query: 5 YKEEHPFEKRKAEGEKIRRKYPDRVPVIVEK-APKARIGDLDKKKYLVPSDLTVGQFYFL 63
+K+ F R E ++IR ++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 8 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 67
Query: 64 IRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTV 123
IR+R+QL P A F VN + ++ P A I + +K
Sbjct: 68 IRRRLQLNPTQAFFLLVNQ------------HSMVSVSTPIADIYEQEK----------- 104
Query: 124 GQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
+ED FLY+ Y+ + +G
Sbjct: 105 -------------DEDGFLYMVYASQETFG 121
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex
pdb|2ZJD|C Chain C, Crystal Structure Of Lc3-P62 Complex
Length = 130
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 37/150 (24%)
Query: 5 YKEEHPFEKRKAEGEKIRRKYPDRVPVIVEK-APKARIGDLDKKKYLVPSDLTVGQFYFL 63
+K+ FE+R + IR ++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 12 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 71
Query: 64 IRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTV 123
IR+R+QL A F VN + ++ P + + + +K
Sbjct: 72 IRRRLQLNANQAFFLLVNG------------HSMVSVSTPISEVYESEK----------- 108
Query: 124 GQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
+ED FLY+ Y+ + +G
Sbjct: 109 -------------DEDGFLYMVYASQETFG 125
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex
pdb|2ZZP|B Chain B, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124)
Complex
Length = 129
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 5 YKEEHPFEKRKAEGEKIRRKYPDRVPVIVEK-APKARIGDLDKKKYLVPSDLTVGQFYFL 63
+K+ FE+R + IR ++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 12 FKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 71
Query: 64 IRKRVQLRPEDALFFFVNN 82
IR+R+QL A F VN
Sbjct: 72 IRRRLQLNANQAFFLLVNG 90
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 30/76 (39%)
Query: 110 LDKKKYLVPSDLTVGQFYFLIRKR------------------------------EHHEED 139
LDK K+LVP + + + +IR+R +ED
Sbjct: 52 LDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDED 111
Query: 140 FFLYIAYSDENVYGAS 155
FLY+ Y+ + +G +
Sbjct: 112 GFLYMVYASQETFGTA 127
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure
Length = 121
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 5 YKEEHPFEKRKAEGEKIRRKYPDRVPVIVEK-APKARIGDLDKKKYLVPSDLTVGQFYFL 63
+K+ FE+R + IR ++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 8 FKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 67
Query: 64 IRKRVQLRPEDALFFFVN 81
IR+R+QL A F VN
Sbjct: 68 IRRRLQLNANQAFFLLVN 85
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 30/74 (40%)
Query: 110 LDKKKYLVPSDLTVGQFYFLIRKR------------------------------EHHEED 139
LDK K+LVP + + + +IR+R +ED
Sbjct: 48 LDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDED 107
Query: 140 FFLYIAYSDENVYG 153
FLY+ Y+ + +G
Sbjct: 108 GFLYMVYASQETFG 121
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light
Chain-3
Length = 120
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 37/150 (24%)
Query: 5 YKEEHPFEKRKAEGEKIRRKYPDRVPVIVEK-APKARIGDLDKKKYLVPSDLTVGQFYFL 63
+K+ FE+R + IR ++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
Query: 64 IRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTV 123
IR+R+QL A F VN + ++ P + + + +K
Sbjct: 67 IRRRLQLNANQAFFLLVNG------------HSMVSVSTPISEVYESEK----------- 103
Query: 124 GQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
+ED FLY+ Y+ + +G
Sbjct: 104 -------------DEDGFLYMVYASQETFG 120
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3
pdb|2Z0D|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex
Length = 125
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 5 YKEEHPFEKRKAEGEKIRRKYPDRVPVIVEK-APKARIGDLDKKKYLVPSDLTVGQFYFL 63
+K+ FE+R + IR ++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 12 FKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 71
Query: 64 IRKRVQLRPEDALFFFVNN 82
IR+R+QL A F VN
Sbjct: 72 IRRRLQLNANQAFFLLVNG 90
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 30/74 (40%)
Query: 110 LDKKKYLVPSDLTVGQFYFLIRKR------------------------------EHHEED 139
LDK K+LVP + + + +IR+R +ED
Sbjct: 52 LDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDED 111
Query: 140 FFLYIAYSDENVYG 153
FLY+ Y+ + +G
Sbjct: 112 GFLYMVYASQETFG 125
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 44 LDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93
L KY+ P V F + V E + F+ N PPTS +G+
Sbjct: 93 LPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGT 142
>pdb|3LXQ|A Chain A, The Crystal Structure Of A Protein In The Alkaline
Phosphatase Superfamily From Vibrio Parahaemolyticus To
1.95a
pdb|3LXQ|B Chain B, The Crystal Structure Of A Protein In The Alkaline
Phosphatase Superfamily From Vibrio Parahaemolyticus To
1.95a
Length = 450
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 119 SDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYGAS 155
SD +G F+ +K + ++ F+ IA D V+GA+
Sbjct: 278 SDYALGTFFDKAKKSSYWDDTIFIVIADHDARVFGAN 314
>pdb|4GDK|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
pdb|4GDK|D Chain D, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
pdb|4GDL|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In
Complex With An N- Terminal Fragment Of Atg16l1
Length = 91
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 41 IGD---LDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPT-SATMGSLYQ 96
+GD + KK+ V T+ I+K ++L + LF +VN P+ +G+LY+
Sbjct: 13 VGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYE 72
Query: 97 V 97
Sbjct: 73 C 73
>pdb|1IAO|A Chain A, Class Ii Mhc I-Ad In Complex With Ovalbumin Peptide
323-339
pdb|2IAD|A Chain A, Class Ii Mhc I-ad In Complex With An Influenza
Hemagglutinin Peptide 126-138
Length = 194
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 36 APKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPP 86
A K +G L K+ P+ Q + V L + L FV+N+ PP
Sbjct: 69 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPP 119
>pdb|1F3J|A Chain A, Histocompatibility Antigen I-Ag7
pdb|1F3J|D Chain D, Histocompatibility Antigen I-Ag7
Length = 182
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 36 APKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPP 86
A K +G L K+ P+ Q + V L + L FV+N+ PP
Sbjct: 66 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPP 116
>pdb|1ES0|A Chain A, Crystal Structure Of The Murine Class Ii Allele I-A(G7)
Complexed With The Glutamic Acid Decarboxylase (Gad65)
Peptide 207-220
pdb|3CUP|A Chain A, Crystal Structure Of The Mhc Class Ii Molecule I-Ag7 In
Complex With The Peptide Gad221-235
pdb|3MBE|A Chain A, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|E Chain E, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 190
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 36 APKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPP 86
A K +G L K+ P+ Q + V L + L FV+N+ PP
Sbjct: 69 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPP 119
>pdb|1TN0|A Chain A, Structure Of Bacterorhodopsin Mutant A51p
pdb|1TN0|B Chain B, Structure Of Bacterorhodopsin Mutant A51p
Length = 249
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 55 LTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATM 91
+ +G YFL++ P+ F+ + ++PP + TM
Sbjct: 20 MGLGTLYFLVKGMGVSDPDAKKFYAITTLVPPIAFTM 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,904,825
Number of Sequences: 62578
Number of extensions: 199586
Number of successful extensions: 620
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 77
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)