Query psy8038
Match_columns 157
No_of_seqs 136 out of 430
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 16:50:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1654|consensus 100.0 2.9E-48 6.4E-53 287.1 9.9 116 1-153 1-116 (116)
2 cd01611 GABARAP Ubiquitin doma 100.0 4.4E-44 9.6E-49 267.1 11.2 112 5-153 1-112 (112)
3 PTZ00380 microtubule-associate 100.0 5.9E-43 1.3E-47 263.8 9.8 111 3-155 2-113 (121)
4 PF02991 Atg8: Autophagy prote 100.0 1.1E-42 2.4E-47 256.6 8.8 104 13-153 1-104 (104)
5 cd01612 APG12_C Ubiquitin-like 99.9 5.2E-25 1.1E-29 157.8 7.5 79 37-153 8-87 (87)
6 KOG1654|consensus 99.7 3.5E-17 7.6E-22 121.7 3.5 55 97-151 31-87 (116)
7 PF02991 Atg8: Autophagy prote 99.6 3.1E-16 6.7E-21 115.8 3.4 50 97-146 19-70 (104)
8 cd01611 GABARAP Ubiquitin doma 99.5 3.5E-14 7.6E-19 106.1 3.9 50 97-146 27-78 (112)
9 KOG3439|consensus 99.3 3E-12 6.4E-17 95.4 7.3 68 27-96 29-97 (116)
10 PF04110 APG12: Ubiquitin-like 99.3 1.6E-12 3.5E-17 93.4 3.3 58 39-96 10-68 (87)
11 PTZ00380 microtubule-associate 99.2 3.8E-12 8.2E-17 96.4 3.0 46 97-147 30-78 (121)
12 cd01612 APG12_C Ubiquitin-like 98.9 6.3E-10 1.4E-14 79.7 3.6 46 102-147 7-54 (87)
13 KOG3439|consensus 96.0 0.0048 1E-07 46.4 2.3 44 104-147 38-83 (116)
14 PF04110 APG12: Ubiquitin-like 94.5 0.034 7.3E-07 40.0 2.7 41 106-146 11-53 (87)
15 cd01794 DC_UbP_C dendritic cel 86.5 1.6 3.4E-05 29.5 4.3 46 49-96 13-58 (70)
16 cd01805 RAD23_N Ubiquitin-like 84.6 3.2 7E-05 27.6 5.2 46 49-96 15-62 (77)
17 PF00240 ubiquitin: Ubiquitin 83.7 2.5 5.4E-05 27.5 4.2 46 48-94 9-54 (69)
18 PF11816 DUF3337: Domain of un 81.5 5.2 0.00011 34.7 6.5 72 25-96 211-313 (331)
19 PF11976 Rad60-SLD: Ubiquitin- 80.7 2.5 5.5E-05 27.8 3.4 48 46-93 12-59 (72)
20 smart00213 UBQ Ubiquitin homol 80.5 2.3 5.1E-05 26.6 3.1 46 47-93 12-57 (64)
21 cd01806 Nedd8 Nebb8-like ubiq 79.6 7.3 0.00016 25.5 5.4 46 49-96 15-60 (76)
22 cd01798 parkin_N amino-termina 77.7 4.9 0.00011 26.5 4.1 46 49-96 13-58 (70)
23 cd01803 Ubiquitin Ubiquitin. U 74.1 10 0.00022 24.8 4.9 47 48-96 14-60 (76)
24 cd01793 Fubi Fubi ubiquitin-li 74.1 9 0.0002 25.5 4.7 48 47-96 11-58 (74)
25 cd01810 ISG15_repeat2 ISG15 ub 73.0 9.8 0.00021 25.4 4.7 46 49-96 13-58 (74)
26 cd01769 UBL Ubiquitin-like dom 72.4 19 0.00041 22.6 5.8 45 48-93 11-55 (69)
27 cd00196 UBQ Ubiquitin-like pro 71.5 9.4 0.0002 21.9 3.9 40 43-83 6-45 (69)
28 cd01791 Ubl5 UBL5 ubiquitin-li 71.2 12 0.00025 25.5 4.7 44 51-96 18-61 (73)
29 KOG2660|consensus 66.5 4.7 0.0001 35.6 2.4 56 40-96 159-216 (331)
30 cd01807 GDX_N ubiquitin-like d 64.5 8.1 0.00018 25.7 2.8 44 49-93 15-58 (74)
31 cd01813 UBP_N UBP ubiquitin pr 60.7 11 0.00024 25.5 3.0 44 51-94 16-61 (74)
32 cd06406 PB1_P67 A PB1 domain i 58.6 9.9 0.00021 27.0 2.5 29 51-80 17-45 (80)
33 cd01799 Hoil1_N Ubiquitin-like 57.5 26 0.00056 23.9 4.4 46 49-96 17-62 (75)
34 cd01804 midnolin_N Ubiquitin-l 56.0 40 0.00086 22.8 5.2 45 49-96 16-60 (78)
35 cd01796 DDI1_N DNA damage indu 52.8 15 0.00032 24.4 2.6 47 49-96 14-60 (71)
36 cd01792 ISG15_repeat1 ISG15 ub 49.5 48 0.001 22.4 4.8 45 51-96 19-64 (80)
37 cd01809 Scythe_N Ubiquitin-lik 47.9 25 0.00053 22.6 3.0 45 48-93 14-58 (72)
38 cd01808 hPLIC_N Ubiquitin-like 47.4 24 0.00052 23.2 2.9 47 48-96 13-59 (71)
39 cd01776 Rin1_RA Ubiquitin doma 46.9 37 0.0008 24.5 3.9 36 47-82 16-53 (87)
40 cd01797 NIRF_N amino-terminal 46.8 48 0.001 22.6 4.4 44 51-96 19-62 (78)
41 PF08154 NLE: NLE (NUC135) dom 46.1 50 0.0011 21.8 4.3 43 43-85 14-57 (65)
42 cd01812 BAG1_N Ubiquitin-like 45.7 30 0.00065 22.2 3.2 44 49-93 14-57 (71)
43 PF14533 USP7_C2: Ubiquitin-sp 44.5 38 0.00083 27.5 4.2 63 44-106 33-105 (213)
44 PF12752 SUZ: SUZ domain; Int 44.5 24 0.00052 23.1 2.5 19 6-24 35-53 (59)
45 PF10302 DUF2407: DUF2407 ubiq 43.3 42 0.00091 24.3 3.8 56 40-96 10-67 (97)
46 PTZ00044 ubiquitin; Provisiona 42.5 31 0.00067 22.7 2.9 44 48-92 14-57 (76)
47 cd01802 AN1_N ubiquitin-like d 42.2 68 0.0015 23.2 4.8 46 49-96 42-87 (103)
48 PF05717 TnpB_IS66: IS66 Orf2 41.2 38 0.00082 24.9 3.4 27 56-82 16-43 (107)
49 PF12436 USP7_ICP0_bdg: ICP0-b 40.2 32 0.00069 28.6 3.2 81 48-135 88-178 (249)
50 PF13019 Telomere_Sde2: Telome 39.9 1E+02 0.0023 24.6 5.9 65 30-96 2-69 (162)
51 cd01795 USP48_C USP ubiquitin- 39.4 42 0.00091 25.1 3.3 44 50-93 20-63 (107)
52 cd01800 SF3a120_C Ubiquitin-li 38.9 39 0.00084 22.6 2.9 46 49-96 12-57 (76)
53 PF11543 UN_NPL4: Nuclear pore 37.4 24 0.00053 24.5 1.7 33 48-81 17-49 (80)
54 TIGR01682 moaD molybdopterin c 37.3 52 0.0011 22.1 3.4 44 49-92 20-66 (80)
55 cd01775 CYR1_RA Ubiquitin doma 36.5 84 0.0018 23.1 4.5 42 48-89 16-62 (97)
56 cd06407 PB1_NLP A PB1 domain i 34.4 63 0.0014 22.5 3.5 48 46-93 11-63 (82)
57 cd01790 Herp_N Homocysteine-re 34.2 91 0.002 21.8 4.2 48 48-96 15-66 (79)
58 PF14560 Ubiquitin_2: Ubiquiti 34.2 64 0.0014 22.1 3.5 31 49-79 18-49 (87)
59 TIGR00601 rad23 UV excision re 33.4 1.2E+02 0.0025 27.2 5.8 51 44-96 8-63 (378)
60 cd06406 PB1_P67 A PB1 domain i 32.8 33 0.00072 24.3 1.8 33 117-151 17-50 (80)
61 PRK06437 hypothetical protein; 32.3 91 0.002 20.6 3.9 40 48-92 14-53 (67)
62 cd01815 BMSC_UbP_N Ubiquitin-l 31.9 65 0.0014 22.4 3.2 43 50-93 16-61 (75)
63 cd01789 Alp11_N Ubiquitin-like 28.0 1.2E+02 0.0026 20.9 4.0 32 51-82 19-51 (84)
64 PF00837 T4_deiodinase: Iodoth 26.3 75 0.0016 26.8 3.2 35 3-38 158-192 (237)
65 PRK08364 sulfur carrier protei 26.3 1.1E+02 0.0024 20.3 3.4 39 48-91 17-55 (70)
66 KOG0010|consensus 26.1 75 0.0016 29.6 3.4 47 45-92 25-71 (493)
67 PF02597 ThiS: ThiS family; I 26.1 67 0.0015 20.8 2.4 41 47-87 14-55 (77)
68 PF04106 APG5: Autophagy prote 25.6 84 0.0018 25.3 3.3 76 16-96 95-181 (197)
69 PF09358 UBA_e1_C: Ubiquitin-a 25.6 52 0.0011 24.7 1.9 25 48-72 36-60 (125)
70 cd00754 MoaD Ubiquitin domain 24.6 1E+02 0.0022 20.2 3.0 45 48-92 19-66 (80)
71 cd01763 Sumo Small ubiquitin-r 24.0 2.4E+02 0.0053 19.3 5.7 47 46-93 23-69 (87)
72 PF00789 UBX: UBX domain; Int 23.0 2.3E+02 0.0051 18.7 4.7 48 47-94 19-70 (82)
73 smart00666 PB1 PB1 domain. Pho 22.7 1.9E+02 0.0042 19.0 4.2 51 46-96 12-66 (81)
74 cd05992 PB1 The PB1 domain is 22.1 2.3E+02 0.0051 18.4 4.5 51 46-96 11-66 (81)
75 cd06411 PB1_p51 The PB1 domain 22.0 70 0.0015 22.6 1.9 46 51-96 13-64 (78)
76 cd06398 PB1_Joka2 The PB1 doma 20.2 1.5E+02 0.0033 21.1 3.4 34 47-80 12-50 (91)
No 1
>KOG1654|consensus
Probab=100.00 E-value=2.9e-48 Score=287.14 Aligned_cols=116 Identities=68% Similarity=1.092 Sum_probs=114.1
Q ss_pred CCCcccccCCHHHHHHHHHHHHhhCCCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEE
Q psy8038 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFV 80 (157)
Q Consensus 1 ~~~~~k~~~~~~~R~~E~~~ir~kyP~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfV 80 (157)
|+.+||++|||++|++|+++||+|||+|||||||++++++||+|||+|||||.++|||||+.+||+||+|+|++||||||
T Consensus 1 ~~~~FK~~~~fe~R~~E~~~Ir~kyP~riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfV 80 (116)
T KOG1654|consen 1 MKSSFKERHPFEKRKAEVRRIREKYPDRIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFV 80 (116)
T ss_pred CcchhhccCCHHHHHHHHHHHHHHCCCCCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEE
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCchhhhcceeeeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCcccc
Q psy8038 81 NNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153 (157)
Q Consensus 81 nn~lps~s~~m~~lY~VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g 153 (157)
||.+|+++++|++||+ -+.++++|||+.||+|||||
T Consensus 81 n~~~p~ts~~ms~~Ye-------------------------------------~~kdeDgFLYm~Ys~e~tfG 116 (116)
T KOG1654|consen 81 NNTSPPTSATMSALYE-------------------------------------EEKDEDGFLYMTYSGENTFG 116 (116)
T ss_pred cCcCCcchhhHHHHHH-------------------------------------hhcccCcEEEEEeccccccC
Confidence 9999999999999999 77899999999999999999
No 2
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=100.00 E-value=4.4e-44 Score=267.05 Aligned_cols=112 Identities=71% Similarity=1.197 Sum_probs=109.9
Q ss_pred ccccCCHHHHHHHHHHHHhhCCCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCcc
Q psy8038 5 YKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVI 84 (157)
Q Consensus 5 ~k~~~~~~~R~~E~~~ir~kyP~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~l 84 (157)
||++||||+|++|+++||+|||+|||||||+++++++|+||++|||||.++||+||+.+||+||+|++++||||||||.+
T Consensus 1 fk~~~s~e~R~~e~~~ir~kyp~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~ 80 (112)
T cd01611 1 FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSL 80 (112)
T ss_pred CccccCHHHHHHHHHHHHHHCCCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhcceeeeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCcccc
Q psy8038 85 PPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153 (157)
Q Consensus 85 ps~s~~m~~lY~VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g 153 (157)
|++|++||+||+ -..++++|||++|+++++||
T Consensus 81 p~~~~~~~~lY~-------------------------------------~~kd~DGfLyl~Ys~~~tfG 112 (112)
T cd01611 81 PPTSATMSQLYE-------------------------------------EHKDEDGFLYMTYSSEETFG 112 (112)
T ss_pred CCchhHHHHHHH-------------------------------------HhCCCCCEEEEEEeccccCC
Confidence 999999999999 66778999999999999999
No 3
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=100.00 E-value=5.9e-43 Score=263.81 Aligned_cols=111 Identities=30% Similarity=0.517 Sum_probs=106.9
Q ss_pred CcccccCCHHHHHHHHHHHHhhCCCeeEEEEEcCCCCCCCCCCcceE-EecCCCchHhHHHHhhhhccCCCCCeEEEEEc
Q psy8038 3 FQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKY-LVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN 81 (157)
Q Consensus 3 ~~~k~~~~~~~R~~E~~~ir~kyP~kIPVIvEr~~~s~lp~Ldk~Kf-LVp~~~tv~qf~~iiRkrL~L~~~~alfLfVn 81 (157)
.+||++||||+|++|+++||+|||+|||||||++++++ ||+|| |||.|+|||||+++||+||+|++++ +|||||
T Consensus 2 ~~fK~~~s~e~R~~e~~~Ir~kyPdrIPVIvEk~~~s~----dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVn 76 (121)
T PTZ00380 2 SAYHSSNPVEARRAECARLQAKYPGHVAVVVEAAEKAG----SKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIE 76 (121)
T ss_pred cchhhcCCHHHHHHHHHHHHHHCCCccEEEEeecCCCC----CceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEEC
Confidence 47999999999999999999999999999999999987 89999 6999999999999999999999999 999999
Q ss_pred CccCCCchhhhcceeeeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCcccccc
Q psy8038 82 NVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYGAS 155 (157)
Q Consensus 82 n~lps~s~~m~~lY~VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g~~ 155 (157)
|.+|+++++||+||+ ...++|+||||.|++||+||+.
T Consensus 77 n~lp~~s~~mg~lYe-------------------------------------~~KDeDGFLYi~Ys~e~tFG~~ 113 (121)
T PTZ00380 77 GSTPAVTATVGDIAD-------------------------------------ACKRDDGFLYVSVRTEQAMGAF 113 (121)
T ss_pred CccCCccchHHHHHH-------------------------------------HhcCCCCeEEEEEccccccccc
Confidence 999999999999999 7778999999999999999975
No 4
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=100.00 E-value=1.1e-42 Score=256.62 Aligned_cols=104 Identities=63% Similarity=1.104 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhhCCCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhh
Q psy8038 13 KRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMG 92 (157)
Q Consensus 13 ~R~~E~~~ir~kyP~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~ 92 (157)
+|++|+++||+|||+||||||||++++++|+|||+|||||.++||+||+.+||+||+|++++||||||||.+|+++++||
T Consensus 1 ~R~~e~~~ir~kyP~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~ 80 (104)
T PF02991_consen 1 ERKEESERIREKYPDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMG 80 (104)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHH
T ss_pred CcHHHHHHHHHHCCCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCcccc
Q psy8038 93 SLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153 (157)
Q Consensus 93 ~lY~VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g 153 (157)
+||+ -..++|+|||+.|++||+||
T Consensus 81 elY~-------------------------------------~~kdeDGFLY~~Ys~e~tFG 104 (104)
T PF02991_consen 81 ELYE-------------------------------------KYKDEDGFLYMTYSSEETFG 104 (104)
T ss_dssp HHHH-------------------------------------HHB-TTSSEEEEEESSSSBC
T ss_pred HHHH-------------------------------------HhCCCCCeEEEEeccccccC
Confidence 9999 77789999999999999999
No 5
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=99.92 E-value=5.2e-25 Score=157.79 Aligned_cols=79 Identities=24% Similarity=0.486 Sum_probs=75.1
Q ss_pred CCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCc-cCCCchhhhcceeeeEecCCCCCCCCCCcccc
Q psy8038 37 PKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNV-IPPTSATMGSLYQVIVEKAPKARIGDLDKKKY 115 (157)
Q Consensus 37 ~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~-lps~s~~m~~lY~VIvEr~~~~~~~~L~k~kf 115 (157)
+-+++|+|+++||+||.++|+++|+.+||+||++++++|+||||||+ +|++|++||+||+
T Consensus 8 ~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~------------------- 68 (87)
T cd01612 8 PIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYR------------------- 68 (87)
T ss_pred ECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHH-------------------
Confidence 46789999999999999999999999999999999999999999996 8899999999999
Q ss_pred cccCCCccchhhhhhhcccCCCcceEEEEecCCCcccc
Q psy8038 116 LVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153 (157)
Q Consensus 116 LvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g 153 (157)
.. .++++|||+|+++++||
T Consensus 69 ------------------~~-~~dGfLyi~Ys~~~afG 87 (87)
T cd01612 69 ------------------CF-GTNGELIVSYCKTVAFG 87 (87)
T ss_pred ------------------hc-CCCCEEEEEEeCccccC
Confidence 55 68999999999999999
No 6
>KOG1654|consensus
Probab=99.67 E-value=3.5e-17 Score=121.69 Aligned_cols=55 Identities=58% Similarity=0.878 Sum_probs=51.8
Q ss_pred eeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccC--CCcceEEEEecCCCcc
Q psy8038 97 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREH--HEEDFFLYIAYSDENV 151 (157)
Q Consensus 97 VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~--~~~a~~L~v~y~~~~~ 151 (157)
||||+++++++|+|||+|||||.|+|||||+++||+|++ +++|+|||||+..-.+
T Consensus 31 VIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn~~~p~t 87 (116)
T KOG1654|consen 31 VIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNTSPPT 87 (116)
T ss_pred EEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEEcCcCCcc
Confidence 899999999999999999999999999999999999997 8999999999876554
No 7
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=99.61 E-value=3.1e-16 Score=115.82 Aligned_cols=50 Identities=58% Similarity=0.999 Sum_probs=43.5
Q ss_pred eeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccC--CCcceEEEEec
Q psy8038 97 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREH--HEEDFFLYIAY 146 (157)
Q Consensus 97 VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~--~~~a~~L~v~y 146 (157)
|||||++++++|+|||+|||||.++|||||+.+||+||+ +++|+|||||.
T Consensus 19 VIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~ 70 (104)
T PF02991_consen 19 VIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNN 70 (104)
T ss_dssp EEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTT
T ss_pred EEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcC
Confidence 899999999999999999999999999999999999997 78999999997
No 8
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=99.47 E-value=3.5e-14 Score=106.09 Aligned_cols=50 Identities=62% Similarity=1.008 Sum_probs=48.3
Q ss_pred eeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccC--CCcceEEEEec
Q psy8038 97 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREH--HEEDFFLYIAY 146 (157)
Q Consensus 97 VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~--~~~a~~L~v~y 146 (157)
|||||++++++|.|||+|||||.++||+||+.+||+||. +++++|||||.
T Consensus 27 VIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~ 78 (112)
T cd01611 27 VIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNN 78 (112)
T ss_pred EEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence 899999999999999999999999999999999999986 78999999987
No 9
>KOG3439|consensus
Probab=99.34 E-value=3e-12 Score=95.45 Aligned_cols=68 Identities=25% Similarity=0.503 Sum_probs=61.3
Q ss_pred CeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcC-ccCCCchhhhccee
Q psy8038 27 DRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTSATMGSLYQ 96 (157)
Q Consensus 27 ~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn-~lps~s~~m~~lY~ 96 (157)
.||-|.+.. -.+.|.|+++||-|+.+.|++.++.+||++|+|.++++||||||| ..|++|+.+|+||+
T Consensus 29 ~kV~i~l~a--iG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~ 97 (116)
T KOG3439|consen 29 RKVQIRLRA--IGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYE 97 (116)
T ss_pred ceEEEEEec--cCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHH
Confidence 355555533 468999999999999999999999999999999999999999999 59999999999999
No 10
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=99.30 E-value=1.6e-12 Score=93.35 Aligned_cols=58 Identities=31% Similarity=0.652 Sum_probs=42.5
Q ss_pred CCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcC-ccCCCchhhhccee
Q psy8038 39 ARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTSATMGSLYQ 96 (157)
Q Consensus 39 s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn-~lps~s~~m~~lY~ 96 (157)
++.|.|.++||-|..+.|++.++.+||++|++.+++++|+|||| ..|+.|+++|+||+
T Consensus 10 G~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~ 68 (87)
T PF04110_consen 10 GSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYR 68 (87)
T ss_dssp TT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHH
T ss_pred CCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHH
Confidence 46999999999999999999999999999999999999999998 69999999999999
No 11
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=99.24 E-value=3.8e-12 Score=96.42 Aligned_cols=46 Identities=33% Similarity=0.369 Sum_probs=41.9
Q ss_pred eeEecCCCCCCCCCCcccc-cccCCCccchhhhhhhcccC--CCcceEEEEecC
Q psy8038 97 VIVEKAPKARIGDLDKKKY-LVPSDLTVGQFYFLIRKREH--HEEDFFLYIAYS 147 (157)
Q Consensus 97 VIvEr~~~~~~~~L~k~kf-LvP~~ltv~qf~~~lr~r~~--~~~a~~L~v~y~ 147 (157)
|||||+++++ ||+|| |||.|+|||||+++||+||+ +++ +|||||+.
T Consensus 30 VIvEk~~~s~----dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~ 78 (121)
T PTZ00380 30 VVVEAAEKAG----SKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIEGS 78 (121)
T ss_pred EEEeecCCCC----CceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEECCc
Confidence 8999999988 89999 59999999999999999998 445 99999884
No 12
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=98.95 E-value=6.3e-10 Score=79.74 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=42.2
Q ss_pred CCCCCCCCCCcccccccCCCccchhhhhhhcccC--CCcceEEEEecC
Q psy8038 102 APKARIGDLDKKKYLVPSDLTVGQFYFLIRKREH--HEEDFFLYIAYS 147 (157)
Q Consensus 102 ~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~--~~~a~~L~v~y~ 147 (157)
-|..++|+|+|+||+||.++|++||+..||+||. .++++|||||.+
T Consensus 7 ~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~ 54 (87)
T cd01612 7 KPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNS 54 (87)
T ss_pred EECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCc
Confidence 4667799999999999999999999999999997 679999999985
No 13
>KOG3439|consensus
Probab=96.00 E-value=0.0048 Score=46.43 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=40.1
Q ss_pred CCCCCCCCcccccccCCCccchhhhhhhcccC--CCcceEEEEecC
Q psy8038 104 KARIGDLDKKKYLVPSDLTVGQFYFLIRKREH--HEEDFFLYIAYS 147 (157)
Q Consensus 104 ~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~--~~~a~~L~v~y~ 147 (157)
--+.|.|+++||-|+..-|++.++..||+.|. +++.+|||||.+
T Consensus 38 iG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~s 83 (116)
T KOG3439|consen 38 IGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNS 83 (116)
T ss_pred cCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCc
Confidence 34578899999999999999999999999986 999999999975
No 14
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=94.53 E-value=0.034 Score=40.04 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=30.4
Q ss_pred CCCCCCcccccccCCCccchhhhhhhcccC--CCcceEEEEec
Q psy8038 106 RIGDLDKKKYLVPSDLTVGQFYFLIRKREH--HEEDFFLYIAY 146 (157)
Q Consensus 106 ~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~--~~~a~~L~v~y 146 (157)
..|.|.++||-|-.+-|++..+..||++|. .++..|||||.
T Consensus 11 ~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~ 53 (87)
T PF04110_consen 11 SAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINN 53 (87)
T ss_dssp T----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEE
T ss_pred CCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcC
Confidence 478899999999999999999999999987 68999999997
No 15
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=86.51 E-value=1.6 Score=29.50 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=35.5
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
.-|+.+.||+++...|..+-++++++- -|+.++.....+.++++ |.
T Consensus 13 l~v~~~~TV~~lK~~I~~~~gi~~~~q-~Li~~G~~L~D~~~l~~-~~ 58 (70)
T cd01794 13 LSVSSKDTVGQLKKQLQAAEGVDPCCQ-RWFFSGKLLTDKTRLQE-TK 58 (70)
T ss_pred EEECCcChHHHHHHHHHHHhCCCHHHe-EEEECCeECCCCCCHHH-cC
Confidence 458888999999999998888877653 33456666777788888 88
No 16
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=84.61 E-value=3.2 Score=27.58 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=34.6
Q ss_pred EEecCCCchHhHHHHhhhhccC--CCCCeEEEEEcCccCCCchhhhccee
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQL--RPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L--~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
+=|+.+.||+++...|..+.++ ++++ .-|..++.....+.++++ |.
T Consensus 15 l~v~~~~TV~~lK~~i~~~~~i~~~~~~-q~L~~~G~~L~d~~~L~~-~~ 62 (77)
T cd01805 15 IEVDPDDTVAELKEKIEEEKGCDYPPEQ-QKLIYSGKILKDDTTLEE-YK 62 (77)
T ss_pred EEECCCCcHHHHHHHHHHhhCCCCChhH-eEEEECCEEccCCCCHHH-cC
Confidence 4488899999999999998887 5554 445566665567777877 77
No 17
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=83.75 E-value=2.5 Score=27.46 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=36.7
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhcc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 94 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~l 94 (157)
.+-|+.+.||+++...|-.+.++++++ +-|+.++.....+.++++.
T Consensus 9 ~~~v~~~~tV~~lK~~i~~~~~~~~~~-~~L~~~G~~L~d~~tL~~~ 54 (69)
T PF00240_consen 9 TLEVDPDDTVADLKQKIAEETGIPPEQ-QRLIYNGKELDDDKTLSDY 54 (69)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSTGGG-EEEEETTEEESTTSBTGGG
T ss_pred EEEECCCCCHHHhhhhccccccccccc-ceeeeeeecccCcCcHHHc
Confidence 445899999999999999999988776 5666677655777777764
No 18
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=81.50 E-value=5.2 Score=34.66 Aligned_cols=72 Identities=17% Similarity=0.327 Sum_probs=56.5
Q ss_pred CCCeeEEEEEcCCCCCCCCCCcc-----------------eEEecCCCchHhHHHHhhhhc--------------cCCCC
Q psy8038 25 YPDRVPVIVEKAPKARIGDLDKK-----------------KYLVPSDLTVGQFYFLIRKRV--------------QLRPE 73 (157)
Q Consensus 25 yP~kIPVIvEr~~~s~lp~Ldk~-----------------KfLVp~~~tv~qf~~iiRkrL--------------~L~~~ 73 (157)
-+.||+-++..++.+..|.+..- |.-.|+-+.|.-+...|-.|+ .+.++
T Consensus 211 e~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~ 290 (331)
T PF11816_consen 211 EPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPE 290 (331)
T ss_pred CCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCC
Confidence 45788889999885444444433 777888889999999999999 34678
Q ss_pred CeEEEEEcCccCCCchhhhccee
Q psy8038 74 DALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 74 ~alfLfVnn~lps~s~~m~~lY~ 96 (157)
+.|=|+||+.+.+.++|++.|=.
T Consensus 291 e~lEl~C~gqvL~~~mtLaTVr~ 313 (331)
T PF11816_consen 291 EWLELLCNGQVLPPDMTLATVRT 313 (331)
T ss_pred ceEEEEeCCeEcCCcCCHHHHHH
Confidence 88999999988888999988766
No 19
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=80.73 E-value=2.5 Score=27.78 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=36.5
Q ss_pred cceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 46 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 46 k~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
...|-|..+.+++.++..++++.++++.+++-|+.++.-...++|.++
T Consensus 12 ~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~ 59 (72)
T PF11976_consen 12 EIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPED 59 (72)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHH
Confidence 357789999999999999999999999566777777754454556654
No 20
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=80.51 E-value=2.3 Score=26.61 Aligned_cols=46 Identities=13% Similarity=0.045 Sum_probs=33.5
Q ss_pred ceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 47 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 47 ~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
..+=|+.+.||+++...|.++.+++++. +-|+.++.....+.++++
T Consensus 12 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~-~~L~~~g~~L~d~~tL~~ 57 (64)
T smart00213 12 ITLEVKPSDTVSELKEKIAELTGIPVEQ-QRLIYKGKVLEDDRTLAD 57 (64)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEECCCCCCHHH
Confidence 3455899999999999999999987764 444556655555556543
No 21
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=79.61 E-value=7.3 Score=25.48 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=34.0
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
+=|+.+.||+++...|-.+.++++++--++ .++.....+.++++ |.
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g~~L~d~~tl~~-~~ 60 (76)
T cd01806 15 IDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDDKTAAD-YK 60 (76)
T ss_pred EEECCCCCHHHHHHHHhHhhCCChhhEEEE-ECCeEccCCCCHHH-cC
Confidence 458899999999999999989888764333 55555556667765 56
No 22
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=77.72 E-value=4.9 Score=26.47 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=36.3
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
+-|+.+.||+++...|-.+.++++++ .-|+.++.....+.++++ |.
T Consensus 13 ~~v~~~~tV~~lK~~i~~~~gi~~~~-q~Li~~G~~L~d~~~l~~-~~ 58 (70)
T cd01798 13 VEVDPDTDIKQLKEVVAKRQGVPPDQ-LRVIFAGKELRNTTTIQE-CD 58 (70)
T ss_pred EEECCCChHHHHHHHHHHHHCCCHHH-eEEEECCeECCCCCcHHH-cC
Confidence 34778999999999999999987655 556677765677788888 77
No 23
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=74.09 E-value=10 Score=24.78 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=34.9
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
.+-|+.+.||+++...|.++.++++++ .=|+.++.....+.++++ |.
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~g~~~~~-q~L~~~g~~L~d~~~L~~-~~ 60 (76)
T cd01803 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSD-YN 60 (76)
T ss_pred EEEECCcCcHHHHHHHHHHHhCCCHHH-eEEEECCEECCCCCcHHH-cC
Confidence 356889999999999999999887654 333456665666667776 66
No 24
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=74.06 E-value=9 Score=25.55 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=37.3
Q ss_pred ceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 47 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 47 ~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
..+=|+.+.||+++...|-.+-++++++ .-|+.++.....+.++++ |.
T Consensus 11 ~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~Li~~Gk~L~D~~tL~~-~~ 58 (74)
T cd01793 11 HTLEVTGQETVSDIKAHVAGLEGIDVED-QVLLLAGVPLEDDATLGQ-CG 58 (74)
T ss_pred EEEEECCcCcHHHHHHHHHhhhCCCHHH-EEEEECCeECCCCCCHHH-cC
Confidence 4556889999999999999988887765 445556666677788887 87
No 25
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=73.03 E-value=9.8 Score=25.37 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=35.8
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
+=|..+.||+++...|-.+-++++++ .-|..++.....+.++++ |.
T Consensus 13 l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~G~~L~D~~tL~~-~~ 58 (74)
T cd01810 13 YEVQLTQTVATLKQQVSQRERVQADQ-FWLSFEGRPMEDEHPLGE-YG 58 (74)
T ss_pred EEECCcChHHHHHHHHHHHhCCCHHH-eEEEECCEECCCCCCHHH-cC
Confidence 45788899999999999888887654 455567766667788887 78
No 26
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=72.38 E-value=19 Score=22.60 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=32.5
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-++.+.|++++...|.++.+++++. +=|..++.....+.++++
T Consensus 11 ~~~~~~~~ti~~lK~~i~~~~~~~~~~-~~l~~~g~~l~d~~~l~~ 55 (69)
T cd01769 11 ELEVSPDDTVAELKAKIAAKEGVPPEQ-QRLIYAGKILKDDKTLSD 55 (69)
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCcCCCCcCCHHH
Confidence 456888999999999999999987665 333556654455666654
No 27
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=71.50 E-value=9.4 Score=21.88 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=30.2
Q ss_pred CCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCc
Q psy8038 43 DLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNV 83 (157)
Q Consensus 43 ~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~ 83 (157)
+.....+.++.+.|++++...|..+.+..+ +...|++|+.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~-~~~~l~~~~~ 45 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPP-EQQRLLVNGK 45 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcCh-HHeEEEECCe
Confidence 344567788899999999999999988544 4466677764
No 28
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=71.17 E-value=12 Score=25.51 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=32.2
Q ss_pred ecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 51 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 51 Vp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
|+.+.||+++...|-.+-++++++--.+|. +.+...+.++++ |.
T Consensus 18 v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~-Gk~L~D~~tL~~-yg 61 (73)
T cd01791 18 CNPDDTIGDLKKLIAAQTGTRPEKIVLKKW-YTIFKDHISLGD-YE 61 (73)
T ss_pred eCCCCcHHHHHHHHHHHhCCChHHEEEEeC-CcCCCCCCCHHH-cC
Confidence 788999999999998887888776544554 445555556665 55
No 29
>KOG2660|consensus
Probab=66.55 E-value=4.7 Score=35.57 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=46.3
Q ss_pred CCCCCCcceEE-ecCCCchHhHHHHhhhhcc-CCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 40 RIGDLDKKKYL-VPSDLTVGQFYFLIRKRVQ-LRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 40 ~lp~Ldk~KfL-Vp~~~tv~qf~~iiRkrL~-L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
.++.|. ++|+ ++...||+++..++++++. ++.-..+=+++|+.+...+.|+.++.-
T Consensus 159 ~~k~l~-~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~~ 216 (331)
T KOG2660|consen 159 TLKDLV-RRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIAY 216 (331)
T ss_pred cccccc-cceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhhh
Confidence 355555 6888 8999999999999999998 666556778889888899999998776
No 30
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=64.48 E-value=8.1 Score=25.73 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=32.7
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+=|+.+.||+++...|..+-++++++ .-|+.++.....+.++++
T Consensus 15 l~v~~~~tV~~lK~~i~~~~gi~~~~-q~L~~~G~~L~d~~~L~~ 58 (74)
T cd01807 15 LQVSEKESVSTLKKLVSEHLNVPEEQ-QRLLFKGKALADDKRLSD 58 (74)
T ss_pred EEECCCCcHHHHHHHHHHHHCCCHHH-eEEEECCEECCCCCCHHH
Confidence 34888999999999999999988755 455567665555666643
No 31
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=60.71 E-value=11 Score=25.53 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=34.0
Q ss_pred ecCCCchHhHHHHhhhhccCCCCCeEEEE--EcCccCCCchhhhcc
Q psy8038 51 VPSDLTVGQFYFLIRKRVQLRPEDALFFF--VNNVIPPTSATMGSL 94 (157)
Q Consensus 51 Vp~~~tv~qf~~iiRkrL~L~~~~alfLf--Vnn~lps~s~~m~~l 94 (157)
|+.+.|+++|...|-...++++++-=.++ +.+.++..+.+++++
T Consensus 16 v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~ 61 (74)
T cd01813 16 TLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISAL 61 (74)
T ss_pred ECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHc
Confidence 77889999999999999998877554444 345667777777765
No 32
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=58.60 E-value=9.9 Score=26.98 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=24.6
Q ss_pred ecCCCchHhHHHHhhhhccCCCCCeEEEEE
Q psy8038 51 VPSDLTVGQFYFLIRKRVQLRPEDALFFFV 80 (157)
Q Consensus 51 Vp~~~tv~qf~~iiRkrL~L~~~~alfLfV 80 (157)
||.+++++|+...|++||++.++ ++-|.-
T Consensus 17 vp~~~~y~~L~~ki~~kLkl~~e-~i~LsY 45 (80)
T cd06406 17 VARGLSYATLLQKISSKLELPAE-HITLSY 45 (80)
T ss_pred cCCCCCHHHHHHHHHHHhCCCch-hcEEEe
Confidence 79999999999999999999854 466654
No 33
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=57.54 E-value=26 Score=23.90 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=32.2
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
+=|+.+.||+++...|-.+-++++++-- ||-+..+-..+.++++ |.
T Consensus 17 l~v~~~~TV~~lK~kI~~~~gip~~~Qr-L~~G~~L~dD~~tL~~-yg 62 (75)
T cd01799 17 LTVRPDMTVAQLKDKVFLDYGFPPAVQR-WVIGQRLARDQETLYS-HG 62 (75)
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHEE-EEcCCeeCCCcCCHHH-cC
Confidence 4588899999999999999999876422 2444455445566655 45
No 34
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=55.95 E-value=40 Score=22.81 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=30.5
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
.=|+.+.||+++...|-++.++.+++- -|..++.....+ ++++ |.
T Consensus 16 l~v~~~~TV~~LK~~I~~~~~~~~~~q-rL~~~Gk~L~d~-~L~~-~g 60 (78)
T cd01804 16 LSVPPDETVEGLKKRISQRLKVPKERL-ALLHRETRLSSG-KLQD-LG 60 (78)
T ss_pred EEECCcCHHHHHHHHHHHHhCCChHHE-EEEECCcCCCCC-cHHH-cC
Confidence 458899999999999998888877653 333444433444 5554 45
No 35
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=52.75 E-value=15 Score=24.45 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=30.8
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
.-|+.++||+++...|-.+-++++++- -|..++.....+...-+-|.
T Consensus 14 l~v~~~~TV~~lK~~I~~~~gip~~~q-~Li~~Gk~L~D~~~~L~~~g 60 (71)
T cd01796 14 LDVDPDLELENFKALCEAESGIPASQQ-QLIYNGRELVDNKRLLALYG 60 (71)
T ss_pred EEECCcCCHHHHHHHHHHHhCCCHHHe-EEEECCeEccCCcccHHHcC
Confidence 348888999999999999989887653 34445543344433333344
No 36
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=49.54 E-value=48 Score=22.37 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=30.3
Q ss_pred ecCCCchHhHHHHhhhhccCCCCC-eEEEEEcCccCCCchhhhccee
Q psy8038 51 VPSDLTVGQFYFLIRKRVQLRPED-ALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 51 Vp~~~tv~qf~~iiRkrL~L~~~~-alfLfVnn~lps~s~~m~~lY~ 96 (157)
|+.+.||+++...|-++.++++++ .|.+..++.....+.++++ |.
T Consensus 19 v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~-~g 64 (80)
T cd01792 19 LRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVS-QG 64 (80)
T ss_pred cCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHH-cC
Confidence 578899999999999888887654 3432234555555556654 55
No 37
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=47.94 E-value=25 Score=22.62 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=32.2
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-++.+.||+++...|.++.+++++.- =|+.++.+...+.++++
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~L~~~g~~L~d~~~L~~ 58 (72)
T cd01809 14 TFTVEEEITVLDLKEKIAEEVGIPVEQQ-RLIYSGRVLKDDETLSE 58 (72)
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHe-EEEECCEECCCcCcHHH
Confidence 4568889999999999999988876542 23346665555666654
No 38
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=47.43 E-value=24 Score=23.17 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=32.9
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
.+=|..+.||+++...|.++.++++++ +-|..++.....+.++++ |.
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~~i~~~~-~~Li~~Gk~L~d~~tL~~-~~ 59 (71)
T cd01808 13 EIEIAEDASVKDFKEAVSKKFKANQEQ-LVLIFAGKILKDTDTLTQ-HN 59 (71)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCHHH-EEEEECCeEcCCCCcHHH-cC
Confidence 455888999999999999888876544 444446655556667655 45
No 39
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=46.91 E-value=37 Score=24.48 Aligned_cols=36 Identities=31% Similarity=0.500 Sum_probs=30.3
Q ss_pred ceEEecCCCchHhHHHHhhhhccCC-CC-CeEEEEEcC
Q psy8038 47 KKYLVPSDLTVGQFYFLIRKRVQLR-PE-DALFFFVNN 82 (157)
Q Consensus 47 ~KfLVp~~~tv~qf~~iiRkrL~L~-~~-~alfLfVnn 82 (157)
+.-+|+.+.|..++-...-.+..+. |+ =+|||+|++
T Consensus 16 KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg 53 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEE 53 (87)
T ss_pred eeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECC
Confidence 4557999999999999999998875 33 389999997
No 40
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=46.81 E-value=48 Score=22.58 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=32.1
Q ss_pred ecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 51 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 51 Vp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
+..+.||+++...|..+-++++++- =|+.++.....+.++++ |.
T Consensus 19 v~~~~TV~~lK~~i~~~~gi~~~~Q-rLi~~Gk~L~D~~tL~~-y~ 62 (78)
T cd01797 19 LSRLTKVEELREKIQELFNVEPECQ-RLFYRGKQMEDGHTLFD-YN 62 (78)
T ss_pred cCCcCcHHHHHHHHHHHhCCCHHHe-EEEeCCEECCCCCCHHH-cC
Confidence 5778999999999998888876542 23346666666777765 56
No 41
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=46.07 E-value=50 Score=21.83 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=34.3
Q ss_pred CCCcceEEecCCCchHhHHHHhhhhc-cCCCCCeEEEEEcCccC
Q psy8038 43 DLDKKKYLVPSDLTVGQFYFLIRKRV-QLRPEDALFFFVNNVIP 85 (157)
Q Consensus 43 ~Ldk~KfLVp~~~tv~qf~~iiRkrL-~L~~~~alfLfVnn~lp 85 (157)
.....-+.||.++|..++..++.+-| .......+=+++|+...
T Consensus 14 ~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~l 57 (65)
T PF08154_consen 14 EVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEEL 57 (65)
T ss_pred cCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEEe
Confidence 45667899999999999999999988 55556667777887543
No 42
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=45.72 E-value=30 Score=22.24 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=29.8
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.-|+.+.||+++...|...-+++++. .=|+.++.....+.++++
T Consensus 14 i~v~~~~tv~~lK~~i~~~~gi~~~~-q~L~~~g~~l~d~~~L~~ 57 (71)
T cd01812 14 LSISSQATFGDLKKMLAPVTGVEPRD-QKLIFKGKERDDAETLDM 57 (71)
T ss_pred EEECCCCcHHHHHHHHHHhhCCChHH-eEEeeCCcccCccCcHHH
Confidence 44888999999999999888887754 233345543344455543
No 43
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=44.50 E-value=38 Score=27.46 Aligned_cols=63 Identities=25% Similarity=0.365 Sum_probs=34.9
Q ss_pred CCcceEEecCCCchHhHHHHhhhhccCCCC--CeEEEE-E-cCc---cCCCchhhhccee---eeEecCCCCC
Q psy8038 44 LDKKKYLVPSDLTVGQFYFLIRKRVQLRPE--DALFFF-V-NNV---IPPTSATMGSLYQ---VIVEKAPKAR 106 (157)
Q Consensus 44 Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~--~alfLf-V-nn~---lps~s~~m~~lY~---VIvEr~~~~~ 106 (157)
-+.-.++||.+-||+++..-++++++++++ ..|-|+ | |+. +.+.+..+++|.+ ..+|.-|.+.
T Consensus 33 ~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l~~~~~~r~E~ip~ee 105 (213)
T PF14533_consen 33 EQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSLNDYITLRIEEIPEEE 105 (213)
T ss_dssp E-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS--TTEEEEEE--GGG
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhccCcceeeeecCChHH
Confidence 355789999999999999999999998764 334443 4 332 5567777777743 5577766665
No 44
>PF12752 SUZ: SUZ domain; InterPro: IPR024771 The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterised in the Caenorhabditis elegans protein SZY-20 where it has been shown to bind RNA and allow their localization to the centrosome [].
Probab=44.49 E-value=24 Score=23.10 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=16.2
Q ss_pred cccCCHHHHHHHHHHHHhh
Q psy8038 6 KEEHPFEKRKAEGEKIRRK 24 (157)
Q Consensus 6 k~~~~~~~R~~E~~~ir~k 24 (157)
+..+++|+|.+++++.|++
T Consensus 35 ~~~kSlEERE~eY~~AR~R 53 (59)
T PF12752_consen 35 RPSKSLEEREAEYAEARAR 53 (59)
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 4567999999999999875
No 45
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=43.26 E-value=42 Score=24.27 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=35.1
Q ss_pred CCCCCCcceEEecCCCchHhHHHHhhhhc-cCCCCCeEEEEEcCccCCCchhhh-ccee
Q psy8038 40 RIGDLDKKKYLVPSDLTVGQFYFLIRKRV-QLRPEDALFFFVNNVIPPTSATMG-SLYQ 96 (157)
Q Consensus 40 ~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL-~L~~~~alfLfVnn~lps~s~~m~-~lY~ 96 (157)
.+|||.= .+--|...|+.++...||.++ .-.....|=|..++.+.+.++.++ ++..
T Consensus 10 sipDl~L-~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~ 67 (97)
T PF10302_consen 10 SIPDLPL-DIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKL 67 (97)
T ss_pred CCCCcee-ecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhcc
Confidence 5676331 011558899999999999999 334455566666766555554444 4443
No 46
>PTZ00044 ubiquitin; Provisional
Probab=42.53 E-value=31 Score=22.68 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=31.5
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhh
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMG 92 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~ 92 (157)
.+-|..+.||+++...|-.+.++++++--.+ .++.....+.+++
T Consensus 14 ~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~~L~d~~~l~ 57 (76)
T PTZ00044 14 SFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YSGKQMSDDLKLS 57 (76)
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECCEEccCCCcHH
Confidence 4558899999999999999999987653333 4554444565664
No 47
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=42.21 E-value=68 Score=23.16 Aligned_cols=46 Identities=15% Similarity=0.057 Sum_probs=33.3
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
+=|..+.||+++...|..+-++++++- =|+.++.....+.++++ |.
T Consensus 42 leV~~~~TV~~lK~kI~~~~gip~~~Q-rLi~~Gk~L~D~~tL~d-y~ 87 (103)
T cd01802 42 LRVSPFETVISVKAKIQRLEGIPVAQQ-HLIWNNMELEDEYCLND-YN 87 (103)
T ss_pred EEeCCCCcHHHHHHHHHHHhCCChHHE-EEEECCEECCCCCcHHH-cC
Confidence 348899999999999999988887652 23355655566667755 56
No 48
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=41.19 E-value=38 Score=24.88 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=22.6
Q ss_pred chHhHHHHhhhhccCCC-CCeEEEEEcC
Q psy8038 56 TVGQFYFLIRKRVQLRP-EDALFFFVNN 82 (157)
Q Consensus 56 tv~qf~~iiRkrL~L~~-~~alfLfVnn 82 (157)
.+.-+..+++..++++| +.++|+|+|.
T Consensus 16 g~dgL~~lV~~~~~~dp~~g~~fvF~nr 43 (107)
T PF05717_consen 16 GIDGLAALVREELGLDPFSGDLFVFCNR 43 (107)
T ss_pred ChhHHHHHHHHhhcCCCCcceEEEEEec
Confidence 56778889999999986 4589999995
No 49
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=40.20 E-value=32 Score=28.59 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=43.7
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEc---Cc--cCCCchhhh--ccee---eeEecCCCCCCCCCCcccccc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN---NV--IPPTSATMG--SLYQ---VIVEKAPKARIGDLDKKKYLV 117 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVn---n~--lps~s~~m~--~lY~---VIvEr~~~~~~~~L~k~kfLv 117 (157)
.+.|+.+.+++++...|++++++++++.|-||-. +. ....+.++. +|=+ +++++.+.+. ++ --
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~---~~----~~ 160 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSED---LD----KS 160 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG-----G----GG
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccc---cc----cc
Confidence 5679999999999999999999999988888753 21 113333332 2211 2234433220 00 01
Q ss_pred cCCCccchhhhhhhcccC
Q psy8038 118 PSDLTVGQFYFLIRKREH 135 (157)
Q Consensus 118 P~~ltv~qf~~~lr~r~~ 135 (157)
+.--++.+|..-|++|+.
T Consensus 161 ~~~~~v~~Yy~~l~nrv~ 178 (249)
T PF12436_consen 161 SRYPDVKEYYDFLYNRVE 178 (249)
T ss_dssp SSS-SHHHHHHHHHHEEE
T ss_pred cCCCCHHHHHHHHhCeEE
Confidence 233477888888888874
No 50
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=39.94 E-value=1e+02 Score=24.55 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=44.1
Q ss_pred EEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEc-C-ccC-CCchhhhccee
Q psy8038 30 PVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN-N-VIP-PTSATMGSLYQ 96 (157)
Q Consensus 30 PVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVn-n-~lp-s~s~~m~~lY~ 96 (157)
-|+|...+.-.+| -...+-+|.+.||+++...|-.++.......++|.++ | .++ ..+..++.+..
T Consensus 2 ~Vlvss~~g~~lp--~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~ 69 (162)
T PF13019_consen 2 NVLVSSFDGLTLP--PTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLS 69 (162)
T ss_pred eEEEecCCCCCCC--CeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhcc
Confidence 4566554432221 1234568999999999999999999988777788775 4 454 45555666664
No 51
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=39.40 E-value=42 Score=25.09 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=31.8
Q ss_pred EecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 50 LVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 50 LVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.|..+.||+++...|-++++..|.+.=..+.+..|--.+.++++
T Consensus 20 ~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLss 63 (107)
T cd01795 20 LVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGT 63 (107)
T ss_pred EeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHh
Confidence 48899999999999999999987643223335555556666654
No 52
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=38.87 E-value=39 Score=22.60 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=32.6
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
+=|+.+.||+++...|...-++++++ .=|..++.....+.+++ -|.
T Consensus 12 l~v~~~~TV~~lK~~i~~~~gip~~~-q~L~~~G~~L~d~~tL~-~~~ 57 (76)
T cd01800 12 FTLQLSDPVSVLKVKIHEETGMPAGK-QKLQYEGIFIKDSNSLA-YYN 57 (76)
T ss_pred EEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEEcCCCCcHH-HcC
Confidence 34888999999999999988887754 33445555556666665 345
No 53
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=37.38 E-value=24 Score=24.47 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=20.7
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN 81 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVn 81 (157)
..=++.+.|++++..-|...++++.. ++.|+.|
T Consensus 17 Rie~~~~~t~~~L~~kI~~~l~~~~~-~~~L~~~ 49 (80)
T PF11543_consen 17 RIEVSPSSTLSDLKEKISEQLSIPDS-SQSLSKD 49 (80)
T ss_dssp EEEE-TTSBHHHHHHHHHHHS---TT-T---BSS
T ss_pred EEEcCCcccHHHHHHHHHHHcCCCCc-ceEEEec
Confidence 34478889999999999999998865 3555554
No 54
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=37.30 E-value=52 Score=22.09 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=30.0
Q ss_pred EEecCC-CchHhHHHHhhhhcc-C-CCCCeEEEEEcCccCCCchhhh
Q psy8038 49 YLVPSD-LTVGQFYFLIRKRVQ-L-RPEDALFFFVNNVIPPTSATMG 92 (157)
Q Consensus 49 fLVp~~-~tv~qf~~iiRkrL~-L-~~~~alfLfVnn~lps~s~~m~ 92 (157)
+=+|.+ .|+.++...|..+.. + .....+.++||+.....+..+.
T Consensus 20 ~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~ 66 (80)
T TIGR01682 20 LELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLN 66 (80)
T ss_pred EECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcC
Confidence 346766 899999999988764 2 2234578899986555454443
No 55
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=36.48 E-value=84 Score=23.09 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=32.1
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCC--eEEEEEcCc---cCCCch
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPED--ALFFFVNNV---IPPTSA 89 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~--alfLfVnn~---lps~s~ 89 (157)
.+.+|-+.||+|++..|.++..++++. .|++-+||. |-+...
T Consensus 16 Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~p~Er 62 (97)
T cd01775 16 TLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLRPTEK 62 (97)
T ss_pred EEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecCCcCC
Confidence 567899999999999999999988754 477777762 445443
No 56
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=34.44 E-value=63 Score=22.55 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=35.1
Q ss_pred cceEEecCCCchHhHHHHhhhhccCCCCCeEEE-EEcC----ccCCCchhhhc
Q psy8038 46 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFF-FVNN----VIPPTSATMGS 93 (157)
Q Consensus 46 k~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfL-fVnn----~lps~s~~m~~ 93 (157)
...|-+|.+.++.++...|++|+++++.+.+-| |.++ .+.+.++-+.+
T Consensus 11 ~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~e 63 (82)
T cd06407 11 KIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEE 63 (82)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHH
Confidence 456789999999999999999999976556666 4443 24455555554
No 57
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=34.21 E-value=91 Score=21.78 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=33.5
Q ss_pred eEEe--cCCCchHhHHHHhhhhcc-CC-CCCeEEEEEcCccCCCchhhhccee
Q psy8038 48 KYLV--PSDLTVGQFYFLIRKRVQ-LR-PEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 48 KfLV--p~~~tv~qf~~iiRkrL~-L~-~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
-|-| +.+.||+++...|..... .. +++ .=|.-.+.+...+.++++.-+
T Consensus 15 ~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~-QrLIy~GKiLkD~~tL~~~~~ 66 (79)
T cd01790 15 DQTVSCFLNWTVGELKTHLSRVYPSKPLEQD-QRLIYSGKLLPDHLKLRDVLR 66 (79)
T ss_pred EEEEecCCcChHHHHHHHHHHhcCCCCChhH-eEEEEcCeeccchhhHHHHhh
Confidence 4666 788999999999988764 22 333 334444556678889988864
No 58
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=34.16 E-value=64 Score=22.07 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=25.1
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCC-eEEEE
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPED-ALFFF 79 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~-alfLf 79 (157)
--+|.++||+|+...|-...+++++. .|+++
T Consensus 18 kr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~ 49 (87)
T PF14560_consen 18 KRFPKSITVSELKQKLEKLTGIPPSDMRLQLK 49 (87)
T ss_dssp EEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence 35899999999999999999998754 56665
No 59
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.39 E-value=1.2e+02 Score=27.19 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=36.8
Q ss_pred CCcceEE--ecCCCchHhHHHHhhhhcc---CCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 44 LDKKKYL--VPSDLTVGQFYFLIRKRVQ---LRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 44 Ldk~KfL--Vp~~~tv~qf~~iiRkrL~---L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
++.++|- |..+.||+++...|...-+ +..++ +-|..++.+...+.++++ |.
T Consensus 8 l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~-QkLIy~GkiL~Dd~tL~d-y~ 63 (378)
T TIGR00601 8 LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQ-QKLIYSGKILSDDKTVRE-YK 63 (378)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhH-eEEEECCEECCCCCcHHH-cC
Confidence 3444554 7789999999999988776 65544 455567777777788877 66
No 60
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=32.82 E-value=33 Score=24.31 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=26.5
Q ss_pred ccCCCccchhhhhhhcccCC-CcceEEEEecCCCcc
Q psy8038 117 VPSDLTVGQFYFLIRKREHH-EEDFFLYIAYSDENV 151 (157)
Q Consensus 117 vP~~ltv~qf~~~lr~r~~~-~~a~~L~v~y~~~~~ 151 (157)
||.+++.+|...-|++|+.- .++ +-+.|++|.+
T Consensus 17 vp~~~~y~~L~~ki~~kLkl~~e~--i~LsYkde~s 50 (80)
T cd06406 17 VARGLSYATLLQKISSKLELPAEH--ITLSYKSEAS 50 (80)
T ss_pred cCCCCCHHHHHHHHHHHhCCCchh--cEEEeccCCC
Confidence 78999999999999999974 444 5578888864
No 61
>PRK06437 hypothetical protein; Provisional
Probab=32.31 E-value=91 Score=20.65 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=27.7
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhh
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMG 92 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~ 92 (157)
.+=++...|++++.. .|++++ +.+-+.+|+.+.+.+..++
T Consensus 14 ~~~i~~~~tv~dLL~----~Lgi~~-~~vaV~vNg~iv~~~~~L~ 53 (67)
T PRK06437 14 TIEIDHELTVNDIIK----DLGLDE-EEYVVIVNGSPVLEDHNVK 53 (67)
T ss_pred EEEcCCCCcHHHHHH----HcCCCC-ccEEEEECCEECCCceEcC
Confidence 344788899999775 457765 4578889987665555553
No 62
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=31.86 E-value=65 Score=22.40 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=28.4
Q ss_pred EecCCCchHhHHHHhhhhcc--CC-CCCeEEEEEcCccCCCchhhhc
Q psy8038 50 LVPSDLTVGQFYFLIRKRVQ--LR-PEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 50 LVp~~~tv~qf~~iiRkrL~--L~-~~~alfLfVnn~lps~s~~m~~ 93 (157)
.-|.+.||+++...|..+.+ .. +++--.+| ++.....+.++++
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy-~GKiL~D~~TL~d 61 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIH-CGRKLKDDQTLDF 61 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEe-CCcCCCCCCcHHH
Confidence 45899999999999999964 43 44433333 4444556666654
No 63
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=28.05 E-value=1.2e+02 Score=20.87 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=25.4
Q ss_pred ecCCCchHhHHHHhhhhccCCCCC-eEEEEEcC
Q psy8038 51 VPSDLTVGQFYFLIRKRVQLRPED-ALFFFVNN 82 (157)
Q Consensus 51 Vp~~~tv~qf~~iiRkrL~L~~~~-alfLfVnn 82 (157)
+|.++||+++...|-..-+++++. .|.++-+.
T Consensus 19 ~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~ 51 (84)
T cd01789 19 YSRGLTIAELKKKLELVVGTPASSMRLQLFDGD 51 (84)
T ss_pred cCCCCcHHHHHHHHHHHHCCCccceEEEEEcCC
Confidence 789999999999998888987654 56555554
No 64
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=26.31 E-value=75 Score=26.84 Aligned_cols=35 Identities=14% Similarity=0.544 Sum_probs=29.6
Q ss_pred CcccccCCHHHHHHHHHHHHhhCCCeeEEEEEcCCC
Q psy8038 3 FQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPK 38 (157)
Q Consensus 3 ~~~k~~~~~~~R~~E~~~ir~kyP~kIPVIvEr~~~ 38 (157)
.++++-.++|+|..-++.+++++| .+||+|-.-++
T Consensus 158 ~~i~qh~sledR~~aA~~l~~~~~-~~pi~vD~mdN 192 (237)
T PF00837_consen 158 YEIPQHRSLEDRLRAAKLLKEEFP-QCPIVVDTMDN 192 (237)
T ss_pred eeecCCCCHHHHHHHHHHHHhhCC-CCCEEEEccCC
Confidence 467888999999999999999997 58999977543
No 65
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=26.27 E-value=1.1e+02 Score=20.29 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=26.7
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhh
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATM 91 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m 91 (157)
.+=+++..|++++.. .|++++ +.+-+.+|+.+.+.+..+
T Consensus 17 ~~~~~~~~tv~~ll~----~l~~~~-~~v~v~vNg~iv~~~~~l 55 (70)
T PRK08364 17 EIEWRKGMKVADILR----AVGFNT-ESAIAKVNGKVALEDDPV 55 (70)
T ss_pred EEEcCCCCcHHHHHH----HcCCCC-ccEEEEECCEECCCCcCc
Confidence 444688899999775 446665 558888998766555444
No 66
>KOG0010|consensus
Probab=26.13 E-value=75 Score=29.63 Aligned_cols=47 Identities=28% Similarity=0.321 Sum_probs=36.0
Q ss_pred CcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhh
Q psy8038 45 DKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMG 92 (157)
Q Consensus 45 dk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~ 92 (157)
||.-|-|+.+.||-||...|-++-+..+++-..+|.+ ++...+.++.
T Consensus 25 dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaG-rILKD~dTL~ 71 (493)
T KOG0010|consen 25 DKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAG-RILKDDDTLK 71 (493)
T ss_pred cceeEecccchHHHHHHHHHHHhcCCChhHeeeeecC-ccccChhhHH
Confidence 3778899999999999999999998888875555554 4444555553
No 67
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=26.07 E-value=67 Score=20.83 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=30.4
Q ss_pred ceEEecCCCchHhHHHHhhhhcc-CCCCCeEEEEEcCccCCC
Q psy8038 47 KKYLVPSDLTVGQFYFLIRKRVQ-LRPEDALFFFVNNVIPPT 87 (157)
Q Consensus 47 ~KfLVp~~~tv~qf~~iiRkrL~-L~~~~alfLfVnn~lps~ 87 (157)
....++...|++++...|..+.. +...+.+-++||+...+.
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~ 55 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD 55 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG
T ss_pred eEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC
Confidence 45678999999999998887653 223466889999865544
No 68
>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents autophagy protein 5 (Apg5).; GO: 0006914 autophagy, 0005737 cytoplasm; PDB: 2DYM_G 2DYO_A.
Probab=25.65 E-value=84 Score=25.27 Aligned_cols=76 Identities=11% Similarity=0.163 Sum_probs=35.6
Q ss_pred HHHHHHH---hhCCCeeEEEEEcCCCCCCCCCCcceEEecC------CCchHhHHHHhhhhc--cCCCCCeEEEEEcCcc
Q psy8038 16 AEGEKIR---RKYPDRVPVIVEKAPKARIGDLDKKKYLVPS------DLTVGQFYFLIRKRV--QLRPEDALFFFVNNVI 84 (157)
Q Consensus 16 ~E~~~ir---~kyP~kIPVIvEr~~~s~lp~Ldk~KfLVp~------~~tv~qf~~iiRkrL--~L~~~~alfLfVnn~l 84 (157)
.-.+++. ..-..+|||.+-.... .|.+.. +||. ..|++++...+=--+ .-+......+++++.-
T Consensus 95 ~i~~kl~~~~~~~~r~IPiRiy~~~~--~~~iQ~---~i~~~~~~g~~~TL~d~L~~~lp~~f~s~~~~~~~~~iihGI~ 169 (197)
T PF04106_consen 95 SINSKLMPPDPSKFRHIPIRIYLPGS--VPVIQP---PIPPIKEDGQPQTLGDALSELLPELFPSSDEPELARVIIHGIE 169 (197)
T ss_dssp HHHHHHS----SS-SB--EEEEE-SS----EE-------B----TT---BTGGGHHHHHTTT--T------EEEEETTEE
T ss_pred HHHHHHHhhcCCCcceeEEEEEeCCC--cceEec---ccccccCCCCcCcHHHHHHHhChhhcccccCccccEEEEeCee
Confidence 3444555 5667899999887554 122221 2232 246666554332111 1123445777889987
Q ss_pred CCCchhhhccee
Q psy8038 85 PPTSATMGSLYQ 96 (157)
Q Consensus 85 ps~s~~m~~lY~ 96 (157)
++.++.+..||+
T Consensus 170 ipldtpl~~l~~ 181 (197)
T PF04106_consen 170 IPLDTPLQWLYE 181 (197)
T ss_dssp E-TTSBHHHHHH
T ss_pred CCCCCcHHHHHH
Confidence 888999999998
No 69
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=25.57 E-value=52 Score=24.68 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=19.8
Q ss_pred eEEecCCCchHhHHHHhhhhccCCC
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRP 72 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~ 72 (157)
+|-|+.++|+++|+..++++-++..
T Consensus 36 r~~v~~~~Tl~~li~~~~~~~~lev 60 (125)
T PF09358_consen 36 RIEVNGDMTLQELIDYFKEKYGLEV 60 (125)
T ss_dssp EEEEES--BHHHHHHHHHHTTS-EE
T ss_pred EEEEcCCCCHHHHHHHHHHHhCceE
Confidence 7889999999999999999988764
No 70
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=24.63 E-value=1e+02 Score=20.19 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=29.7
Q ss_pred eEEecCCCchHhHHHHhhhhccC---CCCCeEEEEEcCccCCCchhhh
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQL---RPEDALFFFVNNVIPPTSATMG 92 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L---~~~~alfLfVnn~lps~s~~m~ 92 (157)
.+-+|+..|++++...|..+..- .....+-++||+...+.+..+.
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~ 66 (80)
T cd00754 19 ELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLK 66 (80)
T ss_pred EEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccC
Confidence 44567789999999888766431 1234577889986555555544
No 71
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=24.03 E-value=2.4e+02 Score=19.25 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=35.3
Q ss_pred cceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 46 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 46 k~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
...|-|..+.|+..++..+..+.++++++.-|+|-+..|-. +.|.++
T Consensus 23 ~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~-~~T~~~ 69 (87)
T cd01763 23 EVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRD-NQTPDD 69 (87)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCC-CCCHHH
Confidence 34688999999999999999999999887666665444443 345544
No 72
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=23.01 E-value=2.3e+02 Score=18.70 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=32.3
Q ss_pred ceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcC---ccCCCc-hhhhcc
Q psy8038 47 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN---VIPPTS-ATMGSL 94 (157)
Q Consensus 47 ~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn---~lps~s-~~m~~l 94 (157)
-.--.+.+.|++.+...|...+.......+-|..+- .+...+ ++++++
T Consensus 19 l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~ 70 (82)
T PF00789_consen 19 LQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEA 70 (82)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCC
T ss_pred EEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHh
Confidence 344466889999999999998887765446655441 244444 677766
No 73
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=22.73 E-value=1.9e+02 Score=18.97 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=35.0
Q ss_pred cceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcC---c-cCCCchhhhccee
Q psy8038 46 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN---V-IPPTSATMGSLYQ 96 (157)
Q Consensus 46 k~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn---~-lps~s~~m~~lY~ 96 (157)
...|.+|.+.|..+|...|.+++++..+.-..-|.++ . ..+.+..|....+
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~ 66 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIE 66 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHH
Confidence 4567899999999999999999998754444445552 1 3344555554444
No 74
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=22.10 E-value=2.3e+02 Score=18.39 Aligned_cols=51 Identities=6% Similarity=0.132 Sum_probs=34.8
Q ss_pred cceEEec-CCCchHhHHHHhhhhccCCCCCeEEEEEcC--c--cCCCchhhhccee
Q psy8038 46 KKKYLVP-SDLTVGQFYFLIRKRVQLRPEDALFFFVNN--V--IPPTSATMGSLYQ 96 (157)
Q Consensus 46 k~KfLVp-~~~tv~qf~~iiRkrL~L~~~~alfLfVnn--~--lps~s~~m~~lY~ 96 (157)
...|.+| .+.|..+|...|++++++....-.+=|.++ - ....+..+.+..+
T Consensus 11 ~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~Dl~~a~~ 66 (81)
T cd05992 11 IRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDLEEAIE 66 (81)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHHHHHHHHH
Confidence 4577888 999999999999999998763433444542 1 3345555555555
No 75
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=22.03 E-value=70 Score=22.59 Aligned_cols=46 Identities=11% Similarity=0.284 Sum_probs=32.5
Q ss_pred ecCCCchHhHHHHhhhhccCCCCCeEEEEEc---C-c-cC-CCchhhhccee
Q psy8038 51 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVN---N-V-IP-PTSATMGSLYQ 96 (157)
Q Consensus 51 Vp~~~tv~qf~~iiRkrL~L~~~~alfLfVn---n-~-lp-s~s~~m~~lY~ 96 (157)
+|...+++++...|.++|.+.++..-.=|-. + . .| +.+..|.++..
T Consensus 13 v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~v~l~~e~~me~aW~ 64 (78)
T cd06411 13 APRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDGHWVPISGEESLQRAWQ 64 (78)
T ss_pred ccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCccEeecCcchHHHHHHH
Confidence 7888999999999999999998774333332 2 2 23 33667776665
No 76
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=20.23 E-value=1.5e+02 Score=21.05 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=27.3
Q ss_pred ceEEecC-----CCchHhHHHHhhhhccCCCCCeEEEEE
Q psy8038 47 KKYLVPS-----DLTVGQFYFLIRKRVQLRPEDALFFFV 80 (157)
Q Consensus 47 ~KfLVp~-----~~tv~qf~~iiRkrL~L~~~~alfLfV 80 (157)
..|-+|. +++..++..-|++++++.+...+-|..
T Consensus 12 rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y 50 (91)
T cd06398 12 RRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTY 50 (91)
T ss_pred EEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEE
Confidence 5677775 799999999999999998866555544
Done!