Query psy8038
Match_columns 157
No_of_seqs 136 out of 430
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 16:51:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m95_A Autophagy related prote 100.0 1.7E-47 5.7E-52 289.3 9.5 117 1-154 9-125 (125)
2 3rui_B Autophagy-related prote 100.0 6.3E-47 2.1E-51 283.6 10.7 116 1-153 3-118 (118)
3 3h9d_A ATG8, microtubule-assoc 100.0 1.9E-45 6.6E-50 275.9 9.0 114 3-153 6-119 (119)
4 1eo6_A GATE-16, golgi-associat 100.0 4E-44 1.4E-48 267.7 9.4 117 1-154 1-117 (117)
5 2zjd_A Microtubule-associated 100.0 2.1E-44 7.2E-49 273.9 7.4 117 1-155 9-127 (130)
6 2r2q_A Gamma-aminobutyric acid 100.0 6.4E-40 2.2E-44 242.5 9.0 110 2-148 1-110 (110)
7 4gdk_A Ubiquitin-like protein 99.9 4.7E-26 1.6E-30 163.4 6.4 86 28-153 5-91 (91)
8 1wz3_A Autophagy 12B, ATG12B, 99.9 1.2E-25 4.2E-30 162.7 5.9 85 26-153 11-96 (96)
9 3w1s_C Ubiquitin-like protein 99.9 2.2E-23 7.4E-28 149.6 6.4 85 26-153 6-91 (91)
10 3m95_A Autophagy related prote 99.6 7.2E-16 2.5E-20 116.2 3.7 50 97-146 39-90 (125)
11 3h9d_A ATG8, microtubule-assoc 99.6 1.1E-15 3.6E-20 114.3 3.4 51 97-147 34-86 (119)
12 3rui_B Autophagy-related prote 99.6 1.4E-15 4.8E-20 113.5 4.0 50 97-146 33-84 (118)
13 2zjd_A Microtubule-associated 99.4 3.2E-14 1.1E-18 107.8 2.9 51 96-146 37-91 (130)
14 1eo6_A GATE-16, golgi-associat 99.4 1.3E-13 4.5E-18 102.5 3.3 51 97-147 31-83 (117)
15 2r2q_A Gamma-aminobutyric acid 99.4 2.2E-13 7.6E-18 100.1 3.7 51 97-147 30-82 (110)
16 4gdk_A Ubiquitin-like protein 99.1 2.9E-11 9.8E-16 86.4 3.4 46 102-147 11-58 (91)
17 1wz3_A Autophagy 12B, ATG12B, 98.9 4E-10 1.4E-14 81.2 3.5 49 97-146 14-62 (96)
18 3w1s_C Ubiquitin-like protein 98.8 1.2E-09 4E-14 78.1 2.1 44 103-147 15-58 (91)
19 3goe_A DNA repair protein RAD6 92.1 0.41 1.4E-05 33.2 5.9 48 46-93 21-68 (82)
20 4fbj_B NEDD8; effector-HOST ta 85.2 1.2 4.2E-05 29.7 4.4 45 48-93 14-58 (88)
21 1ndd_A NEDD8, protein (ubiquit 79.4 2.7 9.2E-05 26.2 4.2 45 48-93 14-58 (76)
22 3a9j_A Ubiquitin; protein comp 79.3 2.6 8.8E-05 26.3 4.1 45 48-93 14-58 (76)
23 3n3k_B Ubiquitin; hydrolase, p 79.0 2.2 7.5E-05 27.5 3.7 45 48-93 17-61 (85)
24 3mtn_B UBA80, ubcep1, ubiquiti 78.4 2.3 7.7E-05 27.4 3.6 45 48-93 17-61 (85)
25 2dzi_A Ubiquitin-like protein 76.0 3.9 0.00013 26.0 4.2 45 48-93 21-65 (81)
26 4dbg_A Ranbp-type and C3HC4-ty 75.3 5.5 0.00019 28.3 5.2 63 28-96 24-86 (105)
27 2bwf_A Ubiquitin-like protein 75.0 4.3 0.00015 25.5 4.2 45 48-93 17-61 (77)
28 1we7_A SF3A1 protein; structur 74.9 18 0.00062 25.0 8.2 72 21-93 18-93 (115)
29 3phx_B Ubiquitin-like protein 74.3 4.7 0.00016 25.7 4.3 45 48-93 18-62 (79)
30 1wh3_A 59 kDa 2'-5'-oligoadeny 73.5 4.9 0.00017 26.1 4.3 45 48-93 21-65 (87)
31 3k9o_B Ubiquitin, UBB+1; E2-25 72.6 4.6 0.00016 26.8 4.1 45 48-93 15-59 (96)
32 1wy8_A NP95-like ring finger p 72.0 5.5 0.00019 26.0 4.3 42 51-93 26-67 (89)
33 1yx5_B Ubiquitin; proteasome, 71.6 5.2 0.00018 26.9 4.2 45 48-93 14-58 (98)
34 4dwf_A HLA-B-associated transc 71.2 14 0.00049 24.0 6.3 45 48-93 19-63 (90)
35 4eew_A Large proline-rich prot 68.3 18 0.00062 23.4 6.3 62 25-93 14-75 (88)
36 1we6_A Splicing factor, putati 67.7 20 0.0007 24.6 6.7 70 20-93 19-89 (111)
37 3dbh_I NEDD8; cell cycle, acti 67.6 4.6 0.00016 26.1 3.1 45 48-93 26-70 (88)
38 3plu_A Ubiquitin-like modifier 67.0 29 0.00098 24.1 7.3 71 18-96 11-81 (93)
39 2kd0_A LRR repeats and ubiquit 66.9 6.6 0.00023 25.9 3.9 44 49-93 26-69 (85)
40 2faz_A Ubiquitin-like containi 66.8 7.3 0.00025 24.6 3.9 42 51-93 21-62 (78)
41 1sif_A Ubiquitin; hydrophobic 65.8 5.9 0.0002 26.2 3.4 44 49-93 24-67 (88)
42 3v6c_B Ubiquitin; structural g 64.6 7 0.00024 25.8 3.6 45 48-93 31-75 (91)
43 2hj8_A Interferon-induced 17 k 63.9 8.2 0.00028 25.4 3.8 44 49-93 19-62 (88)
44 4hcn_B Polyubiquitin, ubiquiti 63.0 6.9 0.00024 26.4 3.4 45 48-93 36-80 (98)
45 2kk8_A Uncharacterized protein 62.7 8.9 0.0003 25.3 3.9 44 49-93 25-69 (84)
46 2ojr_A Ubiquitin; lanthide-bin 62.6 11 0.00037 26.1 4.5 45 48-93 49-93 (111)
47 1wx7_A Ubiquilin 3; ubiquitin- 60.8 9.8 0.00034 26.0 3.9 45 48-93 30-74 (106)
48 1wju_A NEDD8 ultimate buster-1 60.1 8.8 0.0003 26.9 3.6 45 50-96 35-79 (100)
49 2klc_A Ubiquilin-1; ubiquitin- 59.8 9.7 0.00033 26.0 3.7 60 26-93 23-82 (101)
50 2uyz_B Small ubiquitin-related 59.5 12 0.00042 23.6 4.0 45 48-93 17-61 (79)
51 2l7r_A Ubiquitin-like protein 59.3 7.2 0.00025 26.1 2.9 59 26-93 17-75 (93)
52 1yqb_A Ubiquilin 3; structural 59.1 9.3 0.00032 26.1 3.5 60 26-93 20-79 (100)
53 3m62_B UV excision repair prot 57.9 9.3 0.00032 26.3 3.4 44 50-94 17-60 (106)
54 2kvr_A Ubiquitin carboxyl-term 57.8 12 0.0004 27.4 4.0 50 47-96 58-115 (130)
55 2kan_A Uncharacterized protein 57.6 13 0.00044 25.1 4.0 60 26-93 13-73 (94)
56 4a20_A Ubiquitin-like protein 57.1 23 0.00077 24.4 5.3 44 51-96 38-82 (98)
57 3m63_B Ubiquitin domain-contai 56.4 11 0.00037 25.8 3.5 44 49-93 42-85 (101)
58 2kdi_A Ubiquitin, vacuolar pro 56.0 12 0.00042 26.1 3.8 43 50-93 25-67 (114)
59 3vdz_A Ubiquitin-40S ribosomal 55.9 16 0.00055 25.2 4.4 45 48-93 49-93 (111)
60 1j8c_A Ubiquitin-like protein 55.7 15 0.0005 26.2 4.3 45 48-93 45-89 (125)
61 2lxa_A Ubiquitin-like protein 54.4 25 0.00087 23.5 5.1 41 52-93 21-62 (87)
62 1wyw_B Ubiquitin-like protein 54.3 33 0.0011 22.9 5.7 61 26-93 19-79 (97)
63 1wgd_A Homocysteine-responsive 53.6 13 0.00046 24.5 3.5 43 51-94 26-70 (93)
64 3u30_A Ubiquitin, linear DI-ub 53.4 31 0.0011 25.2 5.9 44 49-93 35-78 (172)
65 3rt3_B Ubiquitin-like protein 52.5 19 0.00064 26.0 4.5 86 49-135 17-116 (159)
66 2wyq_A HHR23A, UV excision rep 52.2 42 0.0014 21.2 6.3 61 26-93 3-66 (85)
67 1ttn_A DC-UBP, dendritic cell- 50.8 16 0.00056 24.9 3.7 44 49-93 38-81 (106)
68 1uel_A HHR23B, UV excision rep 49.8 29 0.00098 23.0 4.8 44 49-93 15-61 (95)
69 1wx8_A Riken cDNA 4931431F19; 49.6 10 0.00035 25.2 2.4 45 48-93 30-74 (96)
70 1oey_A P67-PHOX, neutrophil cy 49.3 11 0.00038 25.8 2.5 46 51-96 20-69 (83)
71 2io0_B Small ubiquitin-related 49.3 57 0.002 21.9 6.3 46 47-93 18-63 (91)
72 3b08_A Polyubiquitin-C, ubiqui 49.1 20 0.00068 25.1 4.1 86 49-135 15-111 (152)
73 1wjn_A Tubulin-folding protein 48.0 20 0.00068 24.0 3.7 31 50-80 28-59 (97)
74 3b1l_X E3 ubiquitin-protein li 53.1 4 0.00014 25.7 0.0 44 49-93 15-58 (76)
75 2ylm_A Ubiquitin carboxyl-term 46.8 38 0.0013 29.9 6.3 90 46-135 353-475 (530)
76 3b08_A Polyubiquitin-C, ubiqui 45.7 26 0.00088 24.5 4.2 45 48-93 90-134 (152)
77 3rt3_B Ubiquitin-like protein 44.8 26 0.00089 25.1 4.2 45 48-93 95-139 (159)
78 1wm3_A Ubiquitin-like protein 44.7 40 0.0014 21.3 4.6 46 47-93 14-59 (72)
79 3a4r_A Nfatc2-interacting prot 44.4 62 0.0021 20.9 6.0 46 48-94 22-67 (79)
80 2kj6_A Tubulin folding cofacto 44.1 30 0.001 23.7 4.2 52 26-81 12-63 (97)
81 1uh6_A Ubiquitin-like 5; beta- 41.5 31 0.001 24.1 3.9 46 49-96 43-88 (100)
82 1v5t_A 8430435I17RIK protein; 41.4 27 0.00093 23.0 3.6 44 50-93 23-68 (90)
83 1wia_A Hypothetical ubiquitin- 41.1 43 0.0015 22.0 4.5 41 49-93 22-63 (95)
84 2fnj_B Transcription elongatio 41.0 27 0.00092 25.2 3.6 42 51-93 18-59 (118)
85 4b6w_A Tubulin-specific chaper 40.7 38 0.0013 22.5 4.2 28 51-78 21-49 (86)
86 2k8h_A Small ubiquitin protein 40.3 83 0.0028 22.0 6.1 62 26-94 24-85 (110)
87 2kjr_A CG11242; UBL, ubiquitin 40.2 42 0.0014 22.7 4.4 64 26-93 13-81 (95)
88 3l0w_B Monoubiquitinated proli 39.7 40 0.0014 25.1 4.6 45 49-94 15-59 (169)
89 1v5o_A 1700011N24RIK protein; 39.3 18 0.00061 24.5 2.4 44 49-93 26-70 (102)
90 1x1m_A Ubiquitin-like protein 38.7 57 0.0019 22.1 5.0 39 54-93 44-85 (107)
91 1ip9_A BEM1 protein; ubiquitin 37.9 45 0.0015 22.9 4.2 22 50-71 27-48 (85)
92 2io1_B Small ubiquitin-related 35.5 71 0.0024 21.5 5.0 46 47-93 20-65 (94)
93 1wxv_A BAG-family molecular ch 35.0 35 0.0012 22.3 3.3 44 49-93 21-70 (92)
94 3u5e_m 60S ribosomal protein L 34.8 8.2 0.00028 27.5 0.0 44 49-93 15-58 (128)
95 1wf9_A NPL4 family protein; be 30.7 24 0.00083 24.2 1.9 26 49-74 21-47 (107)
96 3q3f_A Ribonuclease/ubiquitin 30.1 38 0.0013 26.1 3.1 44 49-93 120-163 (189)
97 1ryj_A Unknown; beta/alpha pro 30.0 66 0.0023 20.2 3.9 38 49-91 18-55 (70)
98 1vd2_A Protein kinase C, IOTA 29.6 76 0.0026 21.7 4.3 50 47-96 18-75 (89)
99 2kc2_A Talin-1, F1; FERM, adhe 29.5 58 0.002 23.8 3.9 41 40-81 17-57 (128)
100 3u5c_f 40S ribosomal protein S 29.2 12 0.0004 28.0 0.0 43 50-93 16-58 (152)
101 1v2y_A 3300001G02RIK protein; 29.1 86 0.003 21.8 4.6 52 44-96 15-83 (105)
102 2dzm_A FAS-associated factor 1 28.4 40 0.0014 23.3 2.7 44 50-94 24-68 (100)
103 2kdb_A Homocysteine-responsive 27.9 39 0.0013 23.1 2.6 45 48-94 39-86 (99)
104 1ip9_A BEM1 protein; ubiquitin 27.9 39 0.0013 23.3 2.5 34 116-151 27-60 (85)
105 2eke_C Ubiquitin-like protein 27.8 1.4E+02 0.0049 20.6 5.6 47 47-94 43-89 (106)
106 1yfb_A Transition state regula 27.8 42 0.0015 21.1 2.5 21 62-82 28-48 (59)
107 2d07_B Ubiquitin-like protein 26.7 1.4E+02 0.0049 19.8 5.8 61 26-93 15-75 (93)
108 1wgg_A Ubiquitin carboxyl-term 26.7 34 0.0012 23.0 2.1 43 49-93 22-64 (96)
109 4ajy_B Transcription elongatio 26.2 68 0.0023 23.1 3.7 42 51-93 18-59 (118)
110 1v86_A DNA segment, CHR 7, way 26.0 24 0.00082 23.6 1.2 43 49-93 31-73 (95)
111 2l66_A SSO7C4, transcriptional 24.8 54 0.0018 19.7 2.6 21 62-82 18-38 (53)
112 2l32_A Small archaeal modifier 24.3 55 0.0019 21.2 2.7 36 49-89 15-50 (74)
113 2daf_A FLJ35834 protein; hypot 23.7 75 0.0026 23.0 3.5 43 50-93 32-74 (118)
114 3po0_A Small archaeal modifier 23.0 67 0.0023 20.8 3.0 44 49-92 22-75 (89)
115 2kmm_A Guanosine-3',5'-BIS(dip 22.0 92 0.0031 19.1 3.4 43 46-91 10-52 (73)
116 3hvz_A Uncharacterized protein 21.2 85 0.0029 20.6 3.2 42 47-91 16-57 (78)
117 3u30_A Ubiquitin, linear DI-ub 21.0 66 0.0022 23.4 2.9 45 48-93 110-154 (172)
118 1wz0_A Ubiquitin-like protein 20.7 1.6E+02 0.0054 20.2 4.7 47 47-94 37-83 (104)
119 1pqs_A Cell division control p 20.5 54 0.0018 21.8 2.1 23 49-71 6-28 (77)
120 1fm0_D Molybdopterin convertin 20.4 83 0.0029 19.8 3.0 39 52-91 23-66 (81)
No 1
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=1.7e-47 Score=289.28 Aligned_cols=117 Identities=94% Similarity=1.478 Sum_probs=113.2
Q ss_pred CCCcccccCCHHHHHHHHHHHHhhCCCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEE
Q psy8038 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFV 80 (157)
Q Consensus 1 ~~~~~k~~~~~~~R~~E~~~ir~kyP~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfV 80 (157)
|+++||++||||+|++|+++||+|||+|||||||+++++++|+|||+|||||.++||+||+.+||+||+|++++||||||
T Consensus 9 ~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V 88 (125)
T 3m95_A 9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV 88 (125)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB
T ss_pred ceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCchhhhcceeeeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCccccc
Q psy8038 81 NNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYGA 154 (157)
Q Consensus 81 nn~lps~s~~m~~lY~VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g~ 154 (157)
||++|++|++||+||+ -..++|+||||+||+|++||.
T Consensus 89 nn~lPs~s~~m~~lY~-------------------------------------~~kdeDGfLY~~Ys~e~tfG~ 125 (125)
T 3m95_A 89 NNVIPPTSATMGSLYQ-------------------------------------EHHDEDFFLYIAFSDENVYGN 125 (125)
T ss_dssp TTBCCCTTSBHHHHHH-------------------------------------HHCCTTSCEEEEEESSSCC--
T ss_pred CCccCCccchHHHHHH-------------------------------------HcCCCCCeEEEEecCccccCC
Confidence 9999999999999999 667899999999999999993
No 2
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=6.3e-47 Score=283.62 Aligned_cols=116 Identities=58% Similarity=1.025 Sum_probs=111.5
Q ss_pred CCCcccccCCHHHHHHHHHHHHhhCCCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEE
Q psy8038 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFV 80 (157)
Q Consensus 1 ~~~~~k~~~~~~~R~~E~~~ir~kyP~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfV 80 (157)
|+++||++||||+|++|+++||+|||+|||||||+++++++|+||++|||||.++||+||+.+||+||+|++++||||||
T Consensus 3 m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V 82 (118)
T 3rui_B 3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV 82 (118)
T ss_dssp ---CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB
T ss_pred CcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCchhhhcceeeeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCcccc
Q psy8038 81 NNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153 (157)
Q Consensus 81 nn~lps~s~~m~~lY~VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g 153 (157)
||++|++|++||+||+ -..++++||||+|+++++||
T Consensus 83 n~~~p~~~~~m~~lY~-------------------------------------~~kdeDGfLyv~Ys~~~~fG 118 (118)
T 3rui_B 83 NDTLPPTAALMSAIYQ-------------------------------------EHKDKDGFLYVTYSGENTFG 118 (118)
T ss_dssp TTBCCCTTSBHHHHHH-------------------------------------HHCCTTSCEEEEEEECCCBC
T ss_pred CCccCCccchHHHHHH-------------------------------------HcCCCCCeEEEEEeccccCC
Confidence 9999999999999999 77789999999999999999
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=1.9e-45 Score=275.92 Aligned_cols=114 Identities=49% Similarity=0.874 Sum_probs=109.8
Q ss_pred CcccccCCHHHHHHHHHHHHhhCCCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcC
Q psy8038 3 FQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN 82 (157)
Q Consensus 3 ~~~k~~~~~~~R~~E~~~ir~kyP~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn 82 (157)
.+||++||||+|++|+++||+|||+|||||||+++++++|+||++|||||.++||+||+.+||+||+|++++||||||||
T Consensus 6 ~~fK~~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~ 85 (119)
T 3h9d_A 6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTND 85 (119)
T ss_dssp CHHHHHSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETT
T ss_pred cchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhhhcceeeeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCcccc
Q psy8038 83 VIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153 (157)
Q Consensus 83 ~lps~s~~m~~lY~VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g 153 (157)
++|++|++||+||+ -..++++||||+|+++++||
T Consensus 86 ~~p~~~~~m~~lY~-------------------------------------~~kd~DGfLyv~Ys~e~~fG 119 (119)
T 3h9d_A 86 TVLPSSAQMADIYS-------------------------------------KYKDEDGFLYMKYSGEATFG 119 (119)
T ss_dssp EECCTTSBHHHHHH-------------------------------------HHCCTTSCEEEEEECC-CC-
T ss_pred cCCCccchHHHHHH-------------------------------------HcCCCCCeEEEEEecccccC
Confidence 99999999999999 77789999999999999999
No 4
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=100.00 E-value=4e-44 Score=267.74 Aligned_cols=117 Identities=57% Similarity=0.987 Sum_probs=113.5
Q ss_pred CCCcccccCCHHHHHHHHHHHHhhCCCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEE
Q psy8038 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFV 80 (157)
Q Consensus 1 ~~~~~k~~~~~~~R~~E~~~ir~kyP~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfV 80 (157)
|+++||++||||+|++|+++||+|||+|||||||+++++++|.||++||+||.++||+||+.+||+||+|++++||||||
T Consensus 1 ~~~~fk~~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~v 80 (117)
T 1eo6_A 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV 80 (117)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred CCcchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEE
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCchhhhcceeeeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCccccc
Q psy8038 81 NNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYGA 154 (157)
Q Consensus 81 nn~lps~s~~m~~lY~VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g~ 154 (157)
||.+|++|++||+||+ -..++|+||||+|+++++||+
T Consensus 81 n~~~p~~~~~m~~LY~-------------------------------------~~kd~DGfLyi~Ys~~~~fG~ 117 (117)
T 1eo6_A 81 DKTVPQSSLTMGQLYE-------------------------------------KEKDEDGFLYVAYSGENTFGF 117 (117)
T ss_dssp TTBCCCTTSBHHHHHH-------------------------------------HHCCTTSCEEEEEECCCCCC-
T ss_pred CCEecCccchHHHHHH-------------------------------------HhCCCCCEEEEEEeCCccCCC
Confidence 9999999999999999 667889999999999999995
No 5
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=100.00 E-value=2.1e-44 Score=273.88 Aligned_cols=117 Identities=30% Similarity=0.628 Sum_probs=113.3
Q ss_pred CCCcccccCCHHHHHHHHHHHHhhCCCeeEEEEEcCCCCC-CCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEE-
Q psy8038 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKAR-IGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFF- 78 (157)
Q Consensus 1 ~~~~~k~~~~~~~R~~E~~~ir~kyP~kIPVIvEr~~~s~-lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfL- 78 (157)
|+ +||++||||+|++|+++||+|||+|||||||++++++ +|+|||+|||||.++||+||+.+||+||+|++++||||
T Consensus 9 m~-~fK~~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~ 87 (130)
T 2zjd_A 9 EK-TFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLL 87 (130)
T ss_dssp CC-CHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred hh-HHhhhCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEE
Confidence 66 8999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEcCccCCCchhhhcceeeeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCcccccc
Q psy8038 79 FVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYGAS 155 (157)
Q Consensus 79 fVnn~lps~s~~m~~lY~VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g~~ 155 (157)
||||++|+++++||+||+ -..++++||||+|+++++||+.
T Consensus 88 ~vn~~~p~~~~~m~~lY~-------------------------------------~~kdeDGfLyv~Ys~e~tfG~~ 127 (130)
T 2zjd_A 88 VNGHSMVSVSTPISEVYE-------------------------------------SEKDEDGFLYMVYASQETFGMK 127 (130)
T ss_dssp ETTTEECCTTSBHHHHHH-------------------------------------HHCCTTSCEEEEEEEHHHHHHC
T ss_pred EECCccCCccchHHHHHH-------------------------------------HhCCCCCEEEEEEeCCcccCCc
Confidence 999999999999999999 6677999999999999999963
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=100.00 E-value=6.4e-40 Score=242.45 Aligned_cols=110 Identities=85% Similarity=1.400 Sum_probs=106.3
Q ss_pred CCcccccCCHHHHHHHHHHHHhhCCCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEc
Q psy8038 2 KFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN 81 (157)
Q Consensus 2 ~~~~k~~~~~~~R~~E~~~ir~kyP~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVn 81 (157)
+++||++||||+|++|+++||++||+|||||||+++++++|.|+++||+||.++||+||+.+||+||+|++++|||||||
T Consensus 1 ~~~fk~~~~~e~R~~e~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn 80 (110)
T 2r2q_A 1 GFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN 80 (110)
T ss_dssp CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred CccccccCCHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCchhhhcceeeeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCC
Q psy8038 82 NVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSD 148 (157)
Q Consensus 82 n~lps~s~~m~~lY~VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~ 148 (157)
|.+|+++++||+||+ -..++++||||+|++
T Consensus 81 ~~~p~~~~~m~~LY~-------------------------------------~~kd~DGfLyi~Ys~ 110 (110)
T 2r2q_A 81 NTIPPTSATMGQLYE-------------------------------------DNHEEDYFLYVAYSD 110 (110)
T ss_dssp TBCCCTTSBHHHHHH-------------------------------------HHCCTTSCEEEEEEC
T ss_pred CEecCccChHHHHHH-------------------------------------HcCCCCCEEEEEEeC
Confidence 999999999999999 667899999999985
No 7
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=99.92 E-value=4.7e-26 Score=163.41 Aligned_cols=86 Identities=22% Similarity=0.424 Sum_probs=77.5
Q ss_pred eeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCc-cCCCchhhhcceeeeEecCCCCC
Q psy8038 28 RVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNV-IPPTSATMGSLYQVIVEKAPKAR 106 (157)
Q Consensus 28 kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~-lps~s~~m~~lY~VIvEr~~~~~ 106 (157)
||=|... +-+++|+|+++||+||.++|++||+.+||+||+|++++||||||||+ +|++|++||+||+
T Consensus 5 Kv~v~fk--~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~---------- 72 (91)
T 4gdk_A 5 KIDILLK--AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYE---------- 72 (91)
T ss_dssp EEEEEEE--ECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHH----------
T ss_pred eEEEEEE--ecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHH----------
Confidence 4444443 35789999999999999999999999999999999999999999995 7889999999999
Q ss_pred CCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCcccc
Q psy8038 107 IGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153 (157)
Q Consensus 107 ~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g 153 (157)
-.. ++.+|||+|+++++||
T Consensus 73 ---------------------------~~k-~DGfLyv~Ys~~~afG 91 (91)
T 4gdk_A 73 ---------------------------CFG-SDGKLVLHYCKSQAWG 91 (91)
T ss_dssp ---------------------------HHC-BTTEEEEEEESSCCCC
T ss_pred ---------------------------HhC-CCCEEEEEEeCccccC
Confidence 556 8999999999999999
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=99.92 E-value=1.2e-25 Score=162.69 Aligned_cols=85 Identities=19% Similarity=0.308 Sum_probs=78.5
Q ss_pred CCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcC-ccCCCchhhhcceeeeEecCCC
Q psy8038 26 PDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNN-VIPPTSATMGSLYQVIVEKAPK 104 (157)
Q Consensus 26 P~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn-~lps~s~~m~~lY~VIvEr~~~ 104 (157)
|+||+|++++. +++|+|+++||+||.++|++||+.+||+||+++ |||||||| .+|++|++||+||+
T Consensus 11 ~~KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~-------- 77 (96)
T 1wz3_A 11 VQKIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYN-------- 77 (96)
T ss_dssp -CEEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHH--------
T ss_pred CCeEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHH--------
Confidence 88999999995 569999999999999999999999999999998 99999999 89999999999999
Q ss_pred CCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCcccc
Q psy8038 105 ARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153 (157)
Q Consensus 105 ~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g 153 (157)
-..+ +++|||+|+++++||
T Consensus 78 -----------------------------~~kd-DGfLyi~Ys~~~afG 96 (96)
T 1wz3_A 78 -----------------------------NFGF-DGKLVVNYACSMAWG 96 (96)
T ss_dssp -----------------------------HHCB-TTBEEEEEESCSCC-
T ss_pred -----------------------------HhCC-CCEEEEEEeCCcccC
Confidence 5555 999999999999999
No 9
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=99.88 E-value=2.2e-23 Score=149.63 Aligned_cols=85 Identities=15% Similarity=0.432 Sum_probs=66.5
Q ss_pred CCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCc-cCCCchhhhcceeeeEecCCC
Q psy8038 26 PDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNV-IPPTSATMGSLYQVIVEKAPK 104 (157)
Q Consensus 26 P~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~-lps~s~~m~~lY~VIvEr~~~ 104 (157)
|+||=|-... -.++|+|+++||+||.++|+++|+.+||+||++ +||||||||+ +|++|++||+||+
T Consensus 6 ~~Kv~vrfk~--~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~-------- 72 (91)
T 3w1s_C 6 IQKIQIKFQP--IGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWM-------- 72 (91)
T ss_dssp CCEEEEEEEE--CCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHH--------
T ss_pred CCeEEEEEEe--cCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHH--------
Confidence 5676665544 468999999999999999999999999999999 7999999995 8999999999999
Q ss_pred CCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecCCCcccc
Q psy8038 105 ARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153 (157)
Q Consensus 105 ~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~~g 153 (157)
-.. ++.+|||+|+++++||
T Consensus 73 -----------------------------~fk-~dg~Lyv~Ys~~~afG 91 (91)
T 3w1s_C 73 -----------------------------QFK-TNDELIVSYCASVAFG 91 (91)
T ss_dssp -----------------------------HHC-BTTEEEEEEEC---CC
T ss_pred -----------------------------HhC-CCCEEEEEEeCccccC
Confidence 555 6999999999999999
No 10
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=99.58 E-value=7.2e-16 Score=116.17 Aligned_cols=50 Identities=78% Similarity=1.247 Sum_probs=48.4
Q ss_pred eeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccC--CCcceEEEEec
Q psy8038 97 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREH--HEEDFFLYIAY 146 (157)
Q Consensus 97 VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~--~~~a~~L~v~y 146 (157)
|||||++++++|+|||+|||||.++|||||+.+||+||+ +++|+|||||.
T Consensus 39 VIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn 90 (125)
T 3m95_A 39 VIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN 90 (125)
T ss_dssp EEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTT
T ss_pred EEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECC
Confidence 899999999999999999999999999999999999986 88999999986
No 11
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=99.56 E-value=1.1e-15 Score=114.34 Aligned_cols=51 Identities=49% Similarity=0.800 Sum_probs=48.7
Q ss_pred eeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccC--CCcceEEEEecC
Q psy8038 97 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREH--HEEDFFLYIAYS 147 (157)
Q Consensus 97 VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~--~~~a~~L~v~y~ 147 (157)
|||||++++++|.|||+|||||.++||+||+.+||+||+ +++|+|||||.+
T Consensus 34 VIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~ 86 (119)
T 3h9d_A 34 IICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDT 86 (119)
T ss_dssp EEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTE
T ss_pred EEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCc
Confidence 899999999999999999999999999999999999986 889999999864
No 12
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=99.56 E-value=1.4e-15 Score=113.47 Aligned_cols=50 Identities=54% Similarity=0.895 Sum_probs=48.3
Q ss_pred eeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccC--CCcceEEEEec
Q psy8038 97 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREH--HEEDFFLYIAY 146 (157)
Q Consensus 97 VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~--~~~a~~L~v~y 146 (157)
|||||++++++|+|||+|||||.++||+||+.+||+||+ +++|+|||||.
T Consensus 33 VIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~ 84 (118)
T 3rui_B 33 VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVND 84 (118)
T ss_dssp EEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTT
T ss_pred EEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECC
Confidence 899999999999999999999999999999999999987 78999999986
No 13
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=99.44 E-value=3.2e-14 Score=107.78 Aligned_cols=51 Identities=31% Similarity=0.557 Sum_probs=48.4
Q ss_pred eeeEecCCCCC-CCCCCcccccccCCCccchhhhhhhcccC--CCcceEE-EEec
Q psy8038 96 QVIVEKAPKAR-IGDLDKKKYLVPSDLTVGQFYFLIRKREH--HEEDFFL-YIAY 146 (157)
Q Consensus 96 ~VIvEr~~~~~-~~~L~k~kfLvP~~ltv~qf~~~lr~r~~--~~~a~~L-~v~y 146 (157)
-|||||+++++ +|.|||+|||||.++||+||+.+||+||. +++++|| |||.
T Consensus 37 PVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~ 91 (130)
T 2zjd_A 37 PVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGH 91 (130)
T ss_dssp EEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTT
T ss_pred EEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECC
Confidence 38999999999 99999999999999999999999999986 7899999 8886
No 14
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=99.39 E-value=1.3e-13 Score=102.46 Aligned_cols=51 Identities=53% Similarity=0.883 Sum_probs=48.6
Q ss_pred eeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccC--CCcceEEEEecC
Q psy8038 97 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREH--HEEDFFLYIAYS 147 (157)
Q Consensus 97 VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~--~~~a~~L~v~y~ 147 (157)
||||+++++++|.|+|+|||||.++||+||+.+||+||. +++++|||||..
T Consensus 31 VIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~ 83 (117)
T 1eo6_A 31 VIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKT 83 (117)
T ss_dssp EEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTB
T ss_pred EEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCE
Confidence 899999999999999999999999999999999999987 789999999874
No 15
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=99.37 E-value=2.2e-13 Score=100.12 Aligned_cols=51 Identities=73% Similarity=1.178 Sum_probs=48.6
Q ss_pred eeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccC--CCcceEEEEecC
Q psy8038 97 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREH--HEEDFFLYIAYS 147 (157)
Q Consensus 97 VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~--~~~a~~L~v~y~ 147 (157)
||||+++++++|.|+|+|||||.++|||||+.+||+||. +++++|||||.+
T Consensus 30 Vive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~ 82 (110)
T 2r2q_A 30 VIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNT 82 (110)
T ss_dssp EEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTB
T ss_pred EEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCE
Confidence 899999999999999999999999999999999999987 789999999874
No 16
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=99.12 E-value=2.9e-11 Score=86.36 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=41.9
Q ss_pred CCCCCCCCCCcccccccCCCccchhhhhhhcccC--CCcceEEEEecC
Q psy8038 102 APKARIGDLDKKKYLVPSDLTVGQFYFLIRKREH--HEEDFFLYIAYS 147 (157)
Q Consensus 102 ~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~--~~~a~~L~v~y~ 147 (157)
-+-.++|.|+|+|||||.++||+||+.+||+||+ +++|+|||||.+
T Consensus 11 k~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~ 58 (91)
T 4gdk_A 11 KAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQS 58 (91)
T ss_dssp EECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTT
T ss_pred EecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCc
Confidence 3556799999999999999999999999999987 789999999975
No 17
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=98.94 E-value=4e-10 Score=81.17 Aligned_cols=49 Identities=16% Similarity=0.339 Sum_probs=43.9
Q ss_pred eeEecCCCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEec
Q psy8038 97 VIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAY 146 (157)
Q Consensus 97 VIvEr~~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y 146 (157)
|.|.-.+.+++|.|+|+|||||.++|++||+..||+||+-+ ++|||||.
T Consensus 14 V~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~-alFlyvn~ 62 (96)
T 1wz3_A 14 IVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD-SLFVYVNS 62 (96)
T ss_dssp EEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS-SCEEEEEE
T ss_pred EEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc-eEEEEECC
Confidence 55555566779999999999999999999999999999876 99999997
No 18
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=98.81 E-value=1.2e-09 Score=78.06 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=33.4
Q ss_pred CCCCCCCCCcccccccCCCccchhhhhhhcccCCCcceEEEEecC
Q psy8038 103 PKARIGDLDKKKYLVPSDLTVGQFYFLIRKREHHEEDFFLYIAYS 147 (157)
Q Consensus 103 ~~~~~~~L~k~kfLvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~ 147 (157)
+-.++|.|+|+||+||.++|++||+..||+||.- +++|||||.+
T Consensus 15 ~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l-~alFlyVNn~ 58 (91)
T 3w1s_C 15 PIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM-DHVYCYINNS 58 (91)
T ss_dssp ECCC-------EEEEETTSBHHHHHHHHHHHHTC-SCCEEEETTT
T ss_pred ecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC-ceEEEEECCc
Confidence 3346899999999999999999999999999987 7999999975
No 19
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=92.09 E-value=0.41 Score=33.17 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=40.2
Q ss_pred cceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 46 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 46 k~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.-+|-||.+.+|++++..-|++-+++++.++.|..++.-..+.++.++
T Consensus 21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~D 68 (82)
T 3goe_A 21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQS 68 (82)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGG
T ss_pred CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhh
Confidence 358999999999999999999999999999999998865544445544
No 20
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=85.18 E-value=1.2 Score=29.66 Aligned_cols=45 Identities=7% Similarity=0.044 Sum_probs=33.6
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~ 58 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQR-LIYSGKQMNDEKTAAD 58 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBTTT
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEE-EEECCeECCCCCcHHH
Confidence 34588899999999999999998876543 3346665566767766
No 21
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=79.37 E-value=2.7 Score=26.24 Aligned_cols=45 Identities=7% Similarity=0.026 Sum_probs=33.4
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|.++.++++++ .-|+.++.....+.++++
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~ 58 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQ-QRLIYSGKQMNDEKTAAD 58 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBGGG
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEECCCCCcHHH
Confidence 345888999999999999999998765 444556655555666655
No 22
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=79.27 E-value=2.6 Score=26.32 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=33.0
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++ .-|+.++.....+.++++
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~ 58 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSD 58 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTCBTGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHH-eEEEECCeECCCCCcHHH
Confidence 345889999999999999999998765 444456654455666655
No 23
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=79.00 E-value=2.2 Score=27.49 Aligned_cols=45 Identities=11% Similarity=0.083 Sum_probs=34.2
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++ .-|+.++.....+.++++
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~-qrL~~~g~~L~d~~tL~~ 61 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSD 61 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETBEECCTTCBTTT
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCeECCCCCCHHH
Confidence 345889999999999999999998876 344556665566666665
No 24
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=78.37 E-value=2.3 Score=27.35 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=34.2
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q-rL~~~g~~L~d~~tL~~ 61 (85)
T 3mtn_B 17 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSD 61 (85)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTGG
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCCHHH
Confidence 4558899999999999999999987653 34456666666667766
No 25
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.99 E-value=3.9 Score=26.00 Aligned_cols=45 Identities=11% Similarity=0.202 Sum_probs=32.8
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 21 ~~~v~~~~tV~~LK~~i~~~~~i~~~~qr-L~~~gk~L~d~~tL~~ 65 (81)
T 2dzi_A 21 SLQVPEDELVSTLKQLVSEKLNVPVRQQR-LLFKGKALADGKRLSD 65 (81)
T ss_dssp EEEECSSCBHHHHHHHHHHHTCCCTTTCE-EEETTEECCTTSBGGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHEE-EEECCeECCCCCcHHH
Confidence 34589999999999999999998876533 3346654555666665
No 26
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=75.31 E-value=5.5 Score=28.29 Aligned_cols=63 Identities=19% Similarity=0.126 Sum_probs=43.8
Q ss_pred eeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 28 RVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 28 kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
++=|-||-...+. ..-.+-|..+.||+++...|-.+.++++++-- ++.++.+...+.++++ |.
T Consensus 24 ~l~v~v~d~~s~~----~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~~-yg 86 (105)
T 4dbg_A 24 RLWVSVEDAQMHT----VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLHS-HG 86 (105)
T ss_dssp EEEEEEEESSSCC----EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTGG-GT
T ss_pred EEEEEEEccCCCC----ceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHHH-cC
Confidence 4445555543211 12344588999999999999999999987655 4456677777778776 77
No 27
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=75.01 E-value=4.3 Score=25.52 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=32.8
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++
T Consensus 17 ~~~v~~~~tV~~LK~~i~~~~~i~~~~q-rL~~~gk~L~d~~tL~~ 61 (77)
T 2bwf_A 17 EVNVAPESTVLQFKEAINKANGIPVANQ-RLIYSGKILKDDQTVES 61 (77)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTGG
T ss_pred EEEECCCCcHHHHHHHHHHHhCCCHHHE-EEEECCeEcCCCCCHHH
Confidence 4458899999999999999999887653 34455655555566654
No 28
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=74.91 E-value=18 Score=25.03 Aligned_cols=72 Identities=11% Similarity=0.128 Sum_probs=47.3
Q ss_pred HHhhCCCeeEEEEEcCCCCCCC--CCCcce--EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 21 IRRKYPDRVPVIVEKAPKARIG--DLDKKK--YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 21 ir~kyP~kIPVIvEr~~~s~lp--~Ldk~K--fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
..+.+|..|-|.|.......=| .|+.+. +-|+.+.||+++...|....++++++--. +.++.....+.++++
T Consensus 18 ~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL-~~~Gk~L~D~~tL~~ 93 (115)
T 1we7_A 18 FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKL-QYEGIFIKDSNSLAY 93 (115)
T ss_dssp HHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEE-EETTEEECTTSBHHH
T ss_pred HHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEE-EECCEECCCCCCHHH
Confidence 5677899999988753211100 134433 44899999999999999999988766433 335544455666664
No 29
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=74.29 E-value=4.7 Score=25.72 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=34.4
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++
T Consensus 18 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~ 62 (79)
T 3phx_B 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGE 62 (79)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGG
T ss_pred EEEECCcChHHHHHHHHHhhcCCCHHHE-EEEECCEECCCCCcHHH
Confidence 3458899999999999999999987764 44456665566777776
No 30
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=73.54 E-value=4.9 Score=26.07 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=33.3
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 21 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qr-L~~~Gk~L~d~~tL~~ 65 (87)
T 1wh3_A 21 AYAINPNSFILGLKQQIEDQQGLPKKQQQ-LEFQGQVLQDWLGLGI 65 (87)
T ss_dssp EEEECSSSBHHHHHHHHHHHTCCCTTTEE-EEETTEECCSSSBHHH
T ss_pred EEEeCCCChHHHHHHHHHHHhCCChHHEE-EEECCEEccCCCCHHH
Confidence 34588999999999999999999877643 4446655556666654
No 31
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=72.60 E-value=4.6 Score=26.76 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=34.4
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++ .-|+.++.....+.++++
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~-qrL~~~G~~L~d~~tL~~ 59 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSD 59 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBTGG
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhH-EEEEECCEECCCCCcHHH
Confidence 345889999999999999999998766 444456665566667765
No 32
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.04 E-value=5.5 Score=25.98 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=32.1
Q ss_pred ecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 51 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 51 Vp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~qr-L~~~gk~L~d~~tL~~ 67 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPECQR-LFYRGKQLENGYTLFD 67 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTTEE-EEETTEECCSSSBHHH
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhEE-EEECCeECCCCCCHHH
Confidence 88999999999999999999877643 4446655556666665
No 33
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=71.58 E-value=5.2 Score=26.85 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=33.0
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++ .-|+.++.....+.++++
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~-qrL~~~Gk~L~D~~tL~~ 58 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSD 58 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGG-EEEEETTEECCTTSBTGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCCCCHHH
Confidence 345888999999999999999998765 344456654455666664
No 34
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=71.22 E-value=14 Score=23.96 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=34.1
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++.+++--. +.++.....+.++++
T Consensus 19 ~~~v~~~~tV~~lK~~i~~~~gip~~~qrL-i~~Gk~L~d~~tL~~ 63 (90)
T 4dwf_A 19 TFIVGAQMNVKEFKEHIAASVSIPSEKQRL-IYQGRVLQDDKKLQE 63 (90)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEE-EETTEECCTTSBGGG
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEE-EECCeECCCCCCHHH
Confidence 345889999999999999999998766433 346665666777776
No 35
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=68.27 E-value=18 Score=23.37 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=42.1
Q ss_pred CCCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 25 YPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 25 yP~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
-|..+-|.|...... ...+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 14 ~~~~m~i~Vk~~~g~------~~~~~v~~~~tV~~lK~~i~~~~gip~~~qr-Li~~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQ------TRTFIVGAQMNVKEFKEHIAASVSIPSEKQR-LIYQGRVLQDDKKLQE 75 (88)
T ss_dssp -CCEEEEEEEETTSC------EEEEEEETTCBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBGGG
T ss_pred CCCeEEEEEEcCCCC------EEEEEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCEECCCCCcHHH
Confidence 356677766542211 1234588999999999999999999877643 3446666666777776
No 36
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=67.71 E-value=20 Score=24.55 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=45.2
Q ss_pred HHHhhCCCeeEEEEEcCCCCCCCCCCcceEEecC-CCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 20 KIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPS-DLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 20 ~ir~kyP~kIPVIvEr~~~s~lp~Ldk~KfLVp~-~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
....++|.-|-|.|.-.. .+.=....+-|+. +.||+++...|....++++++-- |+.++.+...+.++++
T Consensus 19 ~~l~~~~~~i~i~Vk~~~---~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L~D~~tL~~ 89 (111)
T 1we6_A 19 QFLAQHPGPATIRVSKPN---ENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQK-LSGKAGFLKDNMSLAH 89 (111)
T ss_dssp HHHHHCCSCEEEEECCTT---CSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSE-EECSSSBCCTTSBTTT
T ss_pred HHHHhCCCcEEEEEEecc---cCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeE-EEECCEECCCCCcHHH
Confidence 345678888888885421 0011122455887 99999999999999998876533 3335555555666654
No 37
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=67.56 E-value=4.6 Score=26.11 Aligned_cols=45 Identities=7% Similarity=0.036 Sum_probs=33.9
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++
T Consensus 26 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~ 70 (88)
T 3dbh_I 26 EIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQMNDEKTAAD 70 (88)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-CEEETTEECCTTSBGGG
T ss_pred EEEECCCCCHHHHHHHHHHHHCcCHHHE-EEEECCeECCCCCcHHH
Confidence 4458899999999999999999887653 33446665566777776
No 38
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=67.04 E-value=29 Score=24.08 Aligned_cols=71 Identities=11% Similarity=0.209 Sum_probs=44.2
Q ss_pred HHHHHhhCCCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 18 GEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 18 ~~~ir~kyP~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
+..+-...|.+|=|.|.-..+ .+..+-|..+.||++|...|-.+.++++++-...| ++.....+.++++ |+
T Consensus 11 ~~~~~~~~~~mIqI~Vk~~~G------kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~LkD~~TL~d-Y~ 81 (93)
T 3plu_A 11 SSGLVPRGSHMIEVVVNDRLG------KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSVLKDHISLED-YE 81 (93)
T ss_dssp ---------CEEEEEEECTTS------CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBTGG-GT
T ss_pred cccccCCCCceEEEEEECCCC------CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEEccCcCCHHH-cC
Confidence 344555667888888864211 11234588889999999999999999988755555 5566666767764 55
No 39
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=66.92 E-value=6.6 Score=25.92 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=31.3
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.-|+.+.||+++...|....++++++-- |+.++.....+.++++
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~Gk~L~D~~tL~~ 69 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQK-LIFKGKVLVETSTLKQ 69 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTCE-EEETTEECCTTCBTTT
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEE-EEECCeECCCcCCHHH
Confidence 3488899999999999999998876532 3345555555555554
No 40
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=66.79 E-value=7.3 Score=24.64 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=31.2
Q ss_pred ecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 51 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 51 Vp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 21 v~~~~tv~~lK~~i~~~~gip~~~qr-L~~~g~~L~d~~tL~~ 62 (78)
T 2faz_A 21 LSRLTKVEELRRKIQELFHVEPGLQR-LFYRGKQMEDGHTLFD 62 (78)
T ss_dssp ECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTCBTTT
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhEE-EEECCEECCCCCCHHH
Confidence 88999999999999999999876643 3345554455656654
No 41
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=65.84 E-value=5.9 Score=26.18 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=31.7
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~Gk~L~D~~tL~~ 67 (88)
T 1sif_A 24 VEMEPSDTIENLKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSD 67 (88)
T ss_dssp EECCTTSBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBSGG
T ss_pred EEECCCChHHHHHHHHHHHHCcChhhEE-EEECCEECCCCCcHHH
Confidence 3488899999999999999998876533 3445554455656654
No 42
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=64.60 E-value=7 Score=25.82 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=33.7
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++.+++- -|+.++.....+.++++
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~ 75 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSD 75 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBTGG
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhhE-EEEECCeECCCcCcHHH
Confidence 3458899999999999999999987653 33446665566667766
No 43
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=63.85 E-value=8.2 Score=25.41 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=32.6
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+=|+.+.||+++...|..+.++++++--.+ .++.....+.++++
T Consensus 19 ~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~ 62 (88)
T 2hj8_A 19 YEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGE 62 (88)
T ss_dssp EEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SSSSCCCTTSBHHH
T ss_pred EEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCcHHH
Confidence 458899999999999999999987764443 45554456666664
No 44
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=63.00 E-value=6.9 Score=26.38 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=33.9
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++
T Consensus 36 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~ 80 (98)
T 4hcn_B 36 TLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSD 80 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBSGG
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHE-EEEECCEECCCCCcHHH
Confidence 4458899999999999999999887654 34456665566667766
No 45
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=62.67 E-value=8.9 Score=25.32 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=32.8
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCcc-CCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVI-PPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~l-ps~s~~m~~ 93 (157)
.-|+.+.||+++...|..+.++++++-- |+.++.. ...+.++++
T Consensus 25 l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~lL~D~~tL~~ 69 (84)
T 2kk8_A 25 LEVDYRDTLLVVKQKIERSQHIPVSKQT-LIVDGIVILREDLTVEQ 69 (84)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGGEE-EEETTEECCCSSSBHHH
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEE-EEECCEEecCCcCCHHH
Confidence 3488999999999999999999876643 3445554 566667765
No 46
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=62.61 E-value=11 Score=26.07 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=32.7
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~ 93 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSD 93 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTEE-EEETTEECCSSCBTTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccEE-EEECCEECCCCCcHHH
Confidence 34588999999999999999999877643 4446554455656654
No 47
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=60.81 E-value=9.8 Score=25.96 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=33.3
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||++|...|..+.++.+++ .-|+.++.....+.++++
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~ 74 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQ 74 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTT-EEEEETTEECCTTSCHHH
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHH
Confidence 455889999999999999999988765 344456655556666654
No 48
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=60.15 E-value=8.8 Score=26.94 Aligned_cols=45 Identities=11% Similarity=0.000 Sum_probs=35.3
Q ss_pred EecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 50 LVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 50 LVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
=|+.+.||+++...|-.+.++++++-- |..++.....+.++++ |.
T Consensus 35 ev~~~~TV~~lK~kI~~k~gip~~qQr-LI~~GKiL~D~~TL~~-y~ 79 (100)
T 1wju_A 35 ETRLHITGRELRSKIAETFGLQENYIK-IVINKKQLQLGKTLEE-QG 79 (100)
T ss_dssp EEESSSBHHHHHHHHHHHTTCCSTTCE-EEETTEECCTTSBHHH-HT
T ss_pred EeCCcCHHHHHHHHHHHHHCcCHHHeE-EEeCCeECCCCCcHHH-cC
Confidence 388999999999999999999887643 4456666677778876 55
No 49
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=59.79 E-value=9.7 Score=25.98 Aligned_cols=60 Identities=25% Similarity=0.393 Sum_probs=41.2
Q ss_pred CCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 26 PDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 26 P~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+..+-|.|... . +...+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 23 ~~~m~I~Vk~~-g------~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~ 82 (101)
T 2klc_A 23 PKIMKVTVKTP-K------EKEEFAVPENSSVQQFKEEISKRFKSHTDQLV-LIFAGKILKDQDTLSQ 82 (101)
T ss_dssp CCCEEEEEECS-S------CEEEEEECSCCCHHHHHHHHHHHHTCCGGGEE-EEETTEEECTTCCTGG
T ss_pred CCeEEEEEEeC-C------cEEEEEECCCCCHHHHHHHHHHHHCcChhhEE-EEECCEECCCcCcHHH
Confidence 56777877653 1 12345589999999999999999998876533 3445554455666655
No 50
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=59.54 E-value=12 Score=23.65 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=34.3
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|..+.||+++...|..+.++++++--++| ++.....+.++++
T Consensus 17 ~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L~d~~tl~~ 61 (79)
T 2uyz_B 17 HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKE 61 (79)
T ss_dssp EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHH
T ss_pred EEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEeCCCCCHHH
Confidence 45689999999999999999999887655544 5544456667765
No 51
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=59.35 E-value=7.2 Score=26.13 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=38.4
Q ss_pred CCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 26 PDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 26 P~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+..+-|.|.. . +...+=|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 17 ~~~m~I~Vk~--g------~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~ 75 (93)
T 2l7r_A 17 RGSMQLFVRA--Q------ELHTFEVTGQETVAQIKAHVASLEGIAPEDQV-VLLAGAPLEDEATLGQ 75 (93)
T ss_dssp ---CEEEEES--S------SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCE-EEETTEECCTTSBHHH
T ss_pred CCcEEEEEEC--C------CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEE-EEECCEECCCCCcHHH
Confidence 3456666654 1 12245588999999999999999998876533 3445555556666665
No 52
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=59.07 E-value=9.3 Score=26.06 Aligned_cols=60 Identities=18% Similarity=0.311 Sum_probs=40.0
Q ss_pred CCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 26 PDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 26 P~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
++.+-|.|....+ +..+=|+.+.||+++...|..+.++++++- -|+.++.....+.++++
T Consensus 20 ~~~m~I~Vk~~~g-------~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~ 79 (100)
T 1yqb_A 20 PHLIKVTVKTPKD-------KEDFSVTDTCTIQQLKEEISQRFKAHPDQL-VLIFAGKILKDPDSLAQ 79 (100)
T ss_dssp TTEEEEEEECSSC-------EEEEEEETTCBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBHHH
T ss_pred CCeEEEEEEcCCC-------cEEEEECCCCcHHHHHHHHHHHHCcChhhE-EEEECCEECCCcCcHHH
Confidence 4456666654221 224558999999999999999999887653 34446655556666665
No 53
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=57.94 E-value=9.3 Score=26.29 Aligned_cols=44 Identities=7% Similarity=0.002 Sum_probs=32.8
Q ss_pred EecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhcc
Q psy8038 50 LVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 94 (157)
Q Consensus 50 LVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~l 94 (157)
-|+.+.||+++...|..+.++.+++-- |+.++.....+.++++.
T Consensus 17 ~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~~ 60 (106)
T 3m62_B 17 DLEPSNTILETKTKLAQSISCEESQIK-LIYSGKVLQDSKTVSEC 60 (106)
T ss_dssp CCCTTSBHHHHHHHHHHTTTSCGGGCE-EEETTEECCTTSBTTTT
T ss_pred EECCCCcHHHHHHHHHHHHCCChhhEE-EEECCEECCCcCCHHHc
Confidence 488899999999999999998876543 33456555666677663
No 54
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=57.77 E-value=12 Score=27.36 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=37.3
Q ss_pred ceEEecCCCchHhHHHHhhhhccCCCCC-eEEEEEc--Cc-----cCCCchhhhccee
Q psy8038 47 KKYLVPSDLTVGQFYFLIRKRVQLRPED-ALFFFVN--NV-----IPPTSATMGSLYQ 96 (157)
Q Consensus 47 ~KfLVp~~~tv~qf~~iiRkrL~L~~~~-alfLfVn--n~-----lps~s~~m~~lY~ 96 (157)
.-|=|++++|+++|...|-+.++++++. -|+..++ |. ++..+++|++.+.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~ 115 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMI 115 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTH
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHH
Confidence 3577999999999999999999998654 6777776 32 3344556666555
No 55
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=57.61 E-value=13 Score=25.05 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=39.1
Q ss_pred CCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCc-hhhhc
Q psy8038 26 PDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTS-ATMGS 93 (157)
Q Consensus 26 P~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s-~~m~~ 93 (157)
+..+-|.|..... ....-|+.+.||+++...|..+.++++++-- |+.++.....+ .++++
T Consensus 13 ~~~~~I~Vk~~~~-------~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~~tL~~ 73 (94)
T 2kan_A 13 VRKIHVTVKFPSK-------QFTVEVDRTETVSSLKDKIHIVENTPIKRMQ-LYYSGIELADDYRNLNE 73 (94)
T ss_dssp SCCEEEEEECSSC-------EEEEEECTTCBHHHHHHHHHHHSSSCTTTEE-EEETTEEECCTTSBHHH
T ss_pred CCCEEEEEEcCCc-------EEEEEECCCCcHHHHHHHHHHHHCcCHHHEE-EEECCEECCCCcccHHH
Confidence 4556666654211 2334589999999999999999999876633 33455444445 66664
No 56
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=57.06 E-value=23 Score=24.36 Aligned_cols=44 Identities=5% Similarity=0.015 Sum_probs=31.5
Q ss_pred ecCCCchHhHHHHh-hhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 51 VPSDLTVGQFYFLI-RKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 51 Vp~~~tv~qf~~ii-RkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
|+.+.||+++...| ...-++++++-- |+.++.....+.++++ |.
T Consensus 38 v~~~~TV~~lK~~I~~~~~gip~~~Qr-Li~~Gk~L~D~~tL~d-y~ 82 (98)
T 4a20_A 38 FSPSDTILQIKQHLISEEKASHISEIK-LLLKGKVLHDNLFLSD-LK 82 (98)
T ss_dssp ECTTCBHHHHHHHHHHTTSCSCGGGEE-EEETTEEECTTCBGGG-SC
T ss_pred cCCCChHHHHHHHHHHHhcCCChhhEE-EEECCEECcCcCCHHH-cC
Confidence 45899999999999 777677776644 3445665667777776 44
No 57
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=56.45 E-value=11 Score=25.82 Aligned_cols=44 Identities=23% Similarity=0.128 Sum_probs=32.3
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+-|+.+.||+++...|..+.++++++--. +.++.....+.++++
T Consensus 42 l~v~~~~TV~~LK~~I~~~~gip~~~QrL-i~~Gk~L~D~~tL~~ 85 (101)
T 3m63_B 42 VNVAPESTVLQFKEAINKANGIPVANQRL-IYSGKILKDDQTVES 85 (101)
T ss_dssp BCCCTTSBHHHHHHHHHHHHSCCSTTCCE-EETTEECCTTSBTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHCcChHHEEE-EECCEECCCcCcHHH
Confidence 34788999999999999999988765333 336665566666665
No 58
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=56.00 E-value=12 Score=26.11 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=31.5
Q ss_pred EecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 50 LVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 50 LVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
=|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 25 ~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~ 67 (114)
T 2kdi_A 25 EVESSDTIDNVKSKIQDKEGIPPDQQR-LIWAGKQLEDGRTLSD 67 (114)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTCBTTT
T ss_pred EECCCCcHHHHHHHHHHHHCcChHHEE-EEECCEECCCCCcHHH
Confidence 478899999999999999999876633 3445554455666654
No 59
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=55.92 E-value=16 Score=25.24 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=33.8
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||++|...|..+.++++++- -|+.++.....+.++++
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~ 93 (111)
T 3vdz_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSD 93 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTTT
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCChHHE-EEEECCEECCCCCcHHH
Confidence 3458899999999999999999987653 34456665566666665
No 60
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=55.74 E-value=15 Score=26.24 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=32.8
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++.+++-- |+.++.....+.++++
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~d 89 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQLV-LIFAGKILKDQDTLIQ 89 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSSEE-EEETTEEESTTSCGGG
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcceEE-EEECCEEcCCCCCHHH
Confidence 34588999999999999999999876643 3445554456666665
No 61
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=54.37 E-value=25 Score=23.52 Aligned_cols=41 Identities=5% Similarity=0.003 Sum_probs=30.4
Q ss_pred cCCCchHhHHHHh-hhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 52 PSDLTVGQFYFLI-RKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 52 p~~~tv~qf~~ii-RkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+.+.||+++...| ..+-++++++--.+ .++.....+.++++
T Consensus 21 ~~~~TV~~lK~~I~~~~~gip~~~QrLi-~~Gk~L~D~~tL~~ 62 (87)
T 2lxa_A 21 SPSDTILQIKQHLISEEKASHISEIKLL-LKGKVLHDNLFLSD 62 (87)
T ss_dssp CTTCBHHHHHHHHHHTTSCSSSTTEEEE-ETTEECCTTCBHHH
T ss_pred CCCCcHHHHHHHHHHHhcCCChHHEEEE-ECCEECcCcCCHHH
Confidence 4889999999999 77778887764444 45666667777775
No 62
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=54.35 E-value=33 Score=22.92 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=42.0
Q ss_pred CCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 26 PDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 26 P~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
++.+-|.|.-.... ...+-|..+.||+++...|..+.++++++--++| ++.....+.++++
T Consensus 19 ~~~m~I~Vk~~~g~------~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~d 79 (97)
T 1wyw_B 19 GEYIKLKVIGQDSS------EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKE 79 (97)
T ss_dssp CCEEEEEEECTTCC------EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHH
T ss_pred CCcEEEEEEeCCCC------EEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHH
Confidence 45677777542211 1245689999999999999999999988755555 5544456667765
No 63
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=53.59 E-value=13 Score=24.51 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=31.3
Q ss_pred ecCCCchHhHHHHhhhhc--cCCCCCeEEEEEcCccCCCchhhhcc
Q psy8038 51 VPSDLTVGQFYFLIRKRV--QLRPEDALFFFVNNVIPPTSATMGSL 94 (157)
Q Consensus 51 Vp~~~tv~qf~~iiRkrL--~L~~~~alfLfVnn~lps~s~~m~~l 94 (157)
|+.+.||+++...|.... ++++++-- |+.++.....+.++++.
T Consensus 26 v~~~~TV~~lK~~I~~~~~~~i~~~~Qr-Li~~Gk~L~D~~tL~~~ 70 (93)
T 1wgd_A 26 GDRGWSVGHLKAHLSRVYPERPRPEDQR-LIYSGKLLLDHQCLRDL 70 (93)
T ss_dssp CCTTSCHHHHHHHHHHHSTTCCCTTTCE-EEETTEECCSSSCHHHH
T ss_pred cCCCCcHHHHHHHHHHHhcCCCChHHeE-EEECCEECcCcCCHHHH
Confidence 558999999999999988 77765533 33456555666777764
No 64
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=53.45 E-value=31 Score=25.21 Aligned_cols=44 Identities=11% Similarity=0.119 Sum_probs=33.6
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 35 l~v~~~~tV~~lK~~I~~~~gip~~~Qr-L~~~g~~L~d~~tL~~ 78 (172)
T 3u30_A 35 LEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSD 78 (172)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTCBTGG
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEE-EEECCccccccCCHhH
Confidence 4489999999999999999999886643 3345655566777776
No 65
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=52.54 E-value=19 Score=25.95 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=54.2
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEE-EEcCccCCCchhhhcce-------eeeEecC-CCCC---CCCCCccc--
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFF-FVNNVIPPTSATMGSLY-------QVIVEKA-PKAR---IGDLDKKK-- 114 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfL-fVnn~lps~s~~m~~lY-------~VIvEr~-~~~~---~~~L~k~k-- 114 (157)
.-|+.+.||+++...|....++++++--.+ |-++.....+.++++.= . ++.+. ++.- +-.++.+.
T Consensus 17 l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~-l~~~~~~~~m~i~vk~~~g~~~~ 95 (159)
T 3rt3_B 17 VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVL-LVVDKSDEPLSILVRNNKGRSST 95 (159)
T ss_dssp EECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEE-EEECCCCCCEEEEEECTTSCEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEE-EEccCCCCcEEEEEECCCCCEEE
Confidence 348899999999999999999988665444 42555446666776531 1 12231 2211 11232222
Q ss_pred ccccCCCccchhhhhhhcccC
Q psy8038 115 YLVPSDLTVGQFYFLIRKREH 135 (157)
Q Consensus 115 fLvP~~ltv~qf~~~lr~r~~ 135 (157)
+=|+.+.||+++...|..+..
T Consensus 96 ~~v~~~~tV~~lK~~i~~~~g 116 (159)
T 3rt3_B 96 YEVRLTQTVAHLKQQVSGLEG 116 (159)
T ss_dssp EEECTTSBHHHHHHHHHHHHT
T ss_pred EEeCCCCCHHHHHHHHHHHHC
Confidence 237888899999998886654
No 66
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=52.18 E-value=42 Score=21.18 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=38.8
Q ss_pred CCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhh---ccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 26 PDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKR---VQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 26 P~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkr---L~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
|..+-|.|....... ..+-|+.+.||+++...|..+ -++++++ .-|+.++.....+.++++
T Consensus 3 ~~~m~i~vk~~~g~~------~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~-qrLi~~Gk~L~D~~tL~~ 66 (85)
T 2wyq_A 3 PMAVTITLKTLQQQT------FKIRMEPDETVKVLKEKIEAEKGRDAFPVAG-QKLIYAGKILSDDVPIRD 66 (85)
T ss_dssp -CCEEEEEEETTSCE------EEEEECTTSBHHHHHHHHHHHHCTTTCCGGG-EEEEETTEECCTTSBGGG
T ss_pred CceEEEEEEECCCCE------EEEEECCCCCHHHHHHHHHhhccccCCCHHH-eEEEECCEECcCCCCHHH
Confidence 556667776532211 234588999999999999997 4566555 334446655566667765
No 67
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=50.83 E-value=16 Score=24.90 Aligned_cols=44 Identities=14% Similarity=0.084 Sum_probs=32.9
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+=|+.+.||+++...|..+.++.+++--.+ .++.....+.++++
T Consensus 38 l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~ 81 (106)
T 1ttn_A 38 LVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FSGRPLTDKMKFEE 81 (106)
T ss_dssp EEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ETTEECCTTSHHHH
T ss_pred EEeCCCCcHHHHHHHHHHHHCcCcccEEEE-ECCEECCCCCcHHH
Confidence 458999999999999999999887654333 35555566667765
No 68
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=49.78 E-value=29 Score=23.03 Aligned_cols=44 Identities=9% Similarity=0.003 Sum_probs=30.6
Q ss_pred EEecCCCchHhHHHHhhhh---ccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKR---VQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkr---L~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+=|+.+.||+++...|..+ -++++++-- |+.++.....+.++++
T Consensus 15 ~~v~~~~TV~~LK~~I~~~~~~~gip~~~qr-Li~~Gk~L~D~~tL~~ 61 (95)
T 1uel_A 15 IDIDPEETVKALKEKIESEKGKDAFPVAGQK-LIYAGKILNDDTALKE 61 (95)
T ss_dssp EECCTTSBHHHHHHHHHHHHCTTTCCTTTEE-EEETTEECCTTSBGGG
T ss_pred EEECCCCHHHHHHHHHHhhcccCCCChhhEE-EEECCEECCCcCcHHH
Confidence 4488899999999999988 456665533 3446655556666664
No 69
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.63 E-value=10 Score=25.17 Aligned_cols=45 Identities=11% Similarity=0.233 Sum_probs=32.7
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++
T Consensus 30 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~ 74 (96)
T 1wx8_A 30 EFFLAENSNVRRFKKQISKYLHCNADRLVLI-FTGKILRDQDILSQ 74 (96)
T ss_dssp EEEEETTCCHHHHHHHHHHHTCSCTTTBCCE-ETTEECCTTSCHHH
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCcCCHHH
Confidence 4458899999999999999999887653333 35554456666665
No 70
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=49.27 E-value=11 Score=25.77 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=33.2
Q ss_pred ecCCCchHhHHHHhhhhccCCCCCeEEEEEc---C-ccCCCchhhhccee
Q psy8038 51 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVN---N-VIPPTSATMGSLYQ 96 (157)
Q Consensus 51 Vp~~~tv~qf~~iiRkrL~L~~~~alfLfVn---n-~lps~s~~m~~lY~ 96 (157)
||.+.+++++...|++||.+.+++...-|=. + ..+..+..|.+..+
T Consensus 20 vp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~ 69 (83)
T 1oey_A 20 TQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWG 69 (83)
T ss_dssp ECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHH
Confidence 8999999999999999999986654333432 2 23555666666666
No 71
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=49.25 E-value=57 Score=21.91 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=34.4
Q ss_pred ceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 47 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 47 ~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
-.|-|.++.+++.++....++.++++++--|+|=+..+.. ++|.++
T Consensus 18 v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~-~~Tp~d 63 (91)
T 2io0_B 18 VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQ 63 (91)
T ss_dssp EEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCT-TCCTTT
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHH
Confidence 4677999999999999999999999887667665444433 334443
No 72
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=49.12 E-value=20 Score=25.15 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=52.3
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhcc-----eee-eEecCCCCC---CCCCCc--ccccc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL-----YQV-IVEKAPKAR---IGDLDK--KKYLV 117 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~l-----Y~V-IvEr~~~~~---~~~L~k--~kfLv 117 (157)
+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++. ..+ ++.+.++.. +-.++. ...=|
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~gip~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~Vk~~~g~~~~~~v 93 (152)
T 3b08_A 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV 93 (152)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEEEEESSSCEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHCcChHHeEEE-ECCeECcCcccHHHhccCCCCeeEEEeecccccceeeeecCCCEEEEEe
Confidence 458889999999999999999987764333 455444455566542 111 112222221 111222 22337
Q ss_pred cCCCccchhhhhhhcccC
Q psy8038 118 PSDLTVGQFYFLIRKREH 135 (157)
Q Consensus 118 P~~ltv~qf~~~lr~r~~ 135 (157)
+.+.||+++...|..+..
T Consensus 94 ~~~~tv~~lK~~i~~~~g 111 (152)
T 3b08_A 94 EPSDTIENVKAKIQDKEG 111 (152)
T ss_dssp CTTCBHHHHHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 888899999998887654
No 73
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=47.98 E-value=20 Score=23.99 Aligned_cols=31 Identities=16% Similarity=0.181 Sum_probs=25.6
Q ss_pred EecCCCchHhHHHHhhhhccCCCC-CeEEEEE
Q psy8038 50 LVPSDLTVGQFYFLIRKRVQLRPE-DALFFFV 80 (157)
Q Consensus 50 LVp~~~tv~qf~~iiRkrL~L~~~-~alfLfV 80 (157)
=+|.++||++|...|.+..++++. +.|++.-
T Consensus 28 ~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 28 QLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 488999999999999999999865 4566553
No 74
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=53.06 E-value=4 Score=25.75 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=29.8
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~gk~L~d~~tL~~ 58 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVI-FAGKELPNHLTVQN 58 (76)
Confidence 347788999999999999888876653333 34444445555554
No 75
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=46.78 E-value=38 Score=29.92 Aligned_cols=90 Identities=10% Similarity=0.039 Sum_probs=58.2
Q ss_pred cceEEecCCCchHhHHHHhhhhccCCC--CCeEEEE-E-cCc---cCCCchhhhcce-----eeeEecCCCCCCCCCCc-
Q psy8038 46 KKKYLVPSDLTVGQFYFLIRKRVQLRP--EDALFFF-V-NNV---IPPTSATMGSLY-----QVIVEKAPKARIGDLDK- 112 (157)
Q Consensus 46 k~KfLVp~~~tv~qf~~iiRkrL~L~~--~~alfLf-V-nn~---lps~s~~m~~lY-----~VIvEr~~~~~~~~L~k- 112 (157)
.-.++||++-||+++..-+++++++++ ...|-|+ | |+. +.+.+.+++.|. .+.+|.-|.+....-+.
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~ 432 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKEN 432 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCC
Confidence 567789999999999999999999974 3335443 3 332 556666665554 36677766654221011
Q ss_pred --------------------ccccccCCCccchhhhhhhcccC
Q psy8038 113 --------------------KKYLVPSDLTVGQFYFLIRKREH 135 (157)
Q Consensus 113 --------------------~kfLvP~~ltv~qf~~~lr~r~~ 135 (157)
..|.|+.+=|.++-..-|++|+.
T Consensus 433 ~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlg 475 (530)
T 2ylm_A 433 EMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLD 475 (530)
T ss_dssp EEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHC
T ss_pred cEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhC
Confidence 12334445578888888888876
No 76
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=45.71 E-value=26 Score=24.55 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=32.3
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++--+ +.++.....+.++++
T Consensus 90 ~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL-~~~g~~L~d~~tL~~ 134 (152)
T 3b08_A 90 TLEVEPSDTIENVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLSD 134 (152)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEE-EETTEECCTTSBTGG
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChhhEEE-EECCEECCCCCCHHH
Confidence 345888999999999999999988766433 445554455556655
No 77
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=44.85 E-value=26 Score=25.15 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=33.4
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 95 ~~~v~~~~tV~~lK~~i~~~~gip~~~q~-L~~~G~~L~d~~tL~~ 139 (159)
T 3rt3_B 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLFW-LTFEGKPLEDQLPLGE 139 (159)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBGGG
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCHHHEE-EEECCeecCCCCCHHH
Confidence 34589999999999999999999877643 4446655556666665
No 78
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=44.71 E-value=40 Score=21.33 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=34.8
Q ss_pred ceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 47 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 47 ~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
-.|-|..+.+++.++.....+.++++++--|+|=+..+.. ++|.++
T Consensus 14 v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~-~~Tp~~ 59 (72)
T 1wm3_A 14 VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQ 59 (72)
T ss_dssp EEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCT-TCCTTT
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCC-CCCHHH
Confidence 4677999999999999999999999887777775545543 334444
No 79
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=44.42 E-value=62 Score=20.90 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=35.1
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhcc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 94 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~l 94 (157)
.|-|..+.+++.++....++.++++++--|+|-+..+. .++|.+++
T Consensus 22 ~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l 67 (79)
T 3a4r_A 22 EISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLS-GKELPADL 67 (79)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECC-SCCCHHHH
T ss_pred EEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHc
Confidence 67799999999999999999999988766666444444 44455544
No 80
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=44.06 E-value=30 Score=23.68 Aligned_cols=52 Identities=10% Similarity=0.024 Sum_probs=35.1
Q ss_pred CCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEc
Q psy8038 26 PDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN 81 (157)
Q Consensus 26 P~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVn 81 (157)
.+-|+|.|.-..... .....=|+.+.||+++...|..+-++++++--.+|.+
T Consensus 12 ~~~v~l~It~s~~~~----~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g 63 (97)
T 2kj6_A 12 DDSVHLHITHANLKS----FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYD 63 (97)
T ss_dssp CCCEEEEEEETTSSC----CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEEC
T ss_pred CceEEEEEEECCCCc----eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 356777775522111 1233459999999999999999999998765444444
No 81
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.49 E-value=31 Score=24.08 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=34.5
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhccee
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQ 96 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~lY~ 96 (157)
.=|+.+.||+++...|..+-++++++-..+ .++.....+.++++ |.
T Consensus 43 lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi-~~Gk~L~D~~TL~d-yg 88 (100)
T 1uh6_A 43 VKCNTDDTIGDLKKLIAAQTGTRWNKIVLK-KWYTIFKDHVSLGD-YE 88 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCGGGCEEE-ETTEECCSSCBHHH-HT
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCCCCHHH-cC
Confidence 448899999999999999999987764333 44555566777776 55
No 82
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=41.45 E-value=27 Score=22.99 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=31.2
Q ss_pred EecCCCchHhHHHHhhhhccCCCCCeEEE-E-EcCccCCCchhhhc
Q psy8038 50 LVPSDLTVGQFYFLIRKRVQLRPEDALFF-F-VNNVIPPTSATMGS 93 (157)
Q Consensus 50 LVp~~~tv~qf~~iiRkrL~L~~~~alfL-f-Vnn~lps~s~~m~~ 93 (157)
=|+.+.||++|...|..+-++.+++--.+ . .++.....+.++++
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~ 68 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGA 68 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHH
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHH
Confidence 46889999999999999999987653333 1 45555555666665
No 83
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.11 E-value=43 Score=21.96 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=27.7
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCc-hhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTS-ATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s-~~m~~ 93 (157)
+-|+.+.||+++...|..+. ...+.| +.++.....+ .++++
T Consensus 22 ~~v~~~~TV~~LK~~i~~~~--~~~qrL--i~~Gk~L~D~~~tL~~ 63 (95)
T 1wia_A 22 AVARPEDTVGTLKSKYFPGQ--ESQMKL--IYQGRLLQDPARTLSS 63 (95)
T ss_dssp EEECSSSBHHHHHHHHSSST--TTTCEE--EETTEECCCSSCBTTT
T ss_pred EEECCCCcHHHHHHHHHhhC--cCcEEE--EECCEEccCCcCCHHH
Confidence 45889999999999998776 334443 3355544445 67765
No 84
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=40.95 E-value=27 Score=25.18 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=33.0
Q ss_pred ecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 51 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 51 Vp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
|..+.||+++...|..+.++.+++--. +.++.....+.++++
T Consensus 18 v~~sdTV~~lK~kI~~~egIP~~qQrL-i~~Gk~LeD~~TLsd 59 (118)
T 2fnj_B 18 AKESSTVFELKRIVEGILKRPPEEQRL-YKDDQLLDDGKTLGE 59 (118)
T ss_dssp EETTSBHHHHHHHHHHHHCCCGGGEEE-EETTEECCTTSBHHH
T ss_pred eCCcChHHHHHHHHHHHhCCCHHHeEE-EECCeECCCCCCHHH
Confidence 888999999999999999998766433 356666677777775
No 85
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=40.71 E-value=38 Score=22.47 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=24.0
Q ss_pred ecCCCchHhHHHHhhhhccCCCCCe-EEE
Q psy8038 51 VPSDLTVGQFYFLIRKRVQLRPEDA-LFF 78 (157)
Q Consensus 51 Vp~~~tv~qf~~iiRkrL~L~~~~a-lfL 78 (157)
++.++||+++..-|..+-++++++- |.+
T Consensus 21 ~~~s~TI~~lK~ki~~~~Gip~~~QrLi~ 49 (86)
T 4b6w_A 21 YGLAQTIESIKENVFTHFATPPEYMQLQL 49 (86)
T ss_dssp EETTSBHHHHHHHHHTTSCCCGGGEEEEE
T ss_pred cCccCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 7999999999999999999987654 444
No 86
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=40.30 E-value=83 Score=22.04 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=42.6
Q ss_pred CCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhcc
Q psy8038 26 PDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 94 (157)
Q Consensus 26 P~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~l 94 (157)
+++|-|.|.-.... ...|-|-.+.+++.++.....+.++++++--|+|-+..|-. ++|.+++
T Consensus 24 ~~~I~IkVk~~~g~------~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~-~~Tp~dl 85 (110)
T 2k8h_A 24 TALVAVKVVNADGA------EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDE-TKTPEEL 85 (110)
T ss_dssp CCCEEEEEEETTSC------CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCS-SSHHHHH
T ss_pred CCeEEEEEECCCCC------EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHHc
Confidence 34565655432222 23677999999999999999999999887677775555544 4566544
No 87
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=40.23 E-value=42 Score=22.72 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=40.5
Q ss_pred CCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEc-Cc----cCCCchhhhc
Q psy8038 26 PDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN-NV----IPPTSATMGS 93 (157)
Q Consensus 26 P~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVn-n~----lps~s~~m~~ 93 (157)
++.|.|.|--...+. .....=|+.+.||+++...|..+.++++++--.+|.+ +. +...+.++++
T Consensus 13 ~~~v~l~It~s~~~~----~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDA----VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp CCEEEEEEEESSCSC----EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred CCeEEEEEEECCCCc----eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 567788775422110 1233458999999999999999999987664334443 22 3355556654
No 88
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=39.65 E-value=40 Score=25.11 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=34.0
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhcc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 94 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~l 94 (157)
+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++.
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~y 59 (169)
T 3l0w_B 15 LEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY 59 (169)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCTTTEE-EEETTEECCTTSBGGGG
T ss_pred EEeCCCCCHHHHHHHHHHHHCcCHHHEE-EEECCccccCcCcHHHc
Confidence 4488899999999999999999887644 44465555667777763
No 89
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=39.30 E-value=18 Score=24.54 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=30.0
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCc-hhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTS-ATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s-~~m~~ 93 (157)
.=|+.+.||++|...|....++.+++-- |+.++.....+ .++++
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~gk~L~D~~~tL~~ 70 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEAQ-IVYMEQLLTDDHCSLGS 70 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGBC-EEETTEEECCSSSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHeE-EEECCEECCCCcccHHH
Confidence 3489999999999999999998876533 33454433333 45553
No 90
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.70 E-value=57 Score=22.14 Aligned_cols=39 Identities=8% Similarity=0.096 Sum_probs=27.8
Q ss_pred CCchHhHHHHhhhhc--cCCCCC-eEEEEEcCccCCCchhhhc
Q psy8038 54 DLTVGQFYFLIRKRV--QLRPED-ALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 54 ~~tv~qf~~iiRkrL--~L~~~~-alfLfVnn~lps~s~~m~~ 93 (157)
+.||+++...|..+. ++.+++ --.+| ++.....+.++++
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~-~Gk~L~D~~tL~~ 85 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIY-CGRKLKDDQTLDF 85 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEE-TTEECCTTCBHHH
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEE-CCeECCCCCcHHH
Confidence 599999999999999 888766 43344 4444455666654
No 91
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=37.92 E-value=45 Score=22.94 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.6
Q ss_pred EecCCCchHhHHHHhhhhccCC
Q psy8038 50 LVPSDLTVGQFYFLIRKRVQLR 71 (157)
Q Consensus 50 LVp~~~tv~qf~~iiRkrL~L~ 71 (157)
.||.+.+..|+..-|+.||.++
T Consensus 27 rvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 27 MLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp EECSCCCHHHHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHHHHhccc
Confidence 5999999999999999999994
No 92
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=35.47 E-value=71 Score=21.47 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=34.5
Q ss_pred ceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 47 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 47 ~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
-.|-|..+.+++.++..+..+.++++++--|+|=+..+.. +.|.++
T Consensus 20 i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~-~~Tp~d 65 (94)
T 2io1_B 20 VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQ 65 (94)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCTTT
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHH
Confidence 3677999999999999999999999887666665544443 334443
No 93
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.95 E-value=35 Score=22.27 Aligned_cols=44 Identities=7% Similarity=0.097 Sum_probs=29.3
Q ss_pred EEecCC-----CchHhHHHHhhhhccCCCCCeEEEEEcCc-cCCCchhhhc
Q psy8038 49 YLVPSD-----LTVGQFYFLIRKRVQLRPEDALFFFVNNV-IPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~-----~tv~qf~~iiRkrL~L~~~~alfLfVnn~-lps~s~~m~~ 93 (157)
+=|+.+ .||++|...|..+.++++++--.+ .++. |...+.++++
T Consensus 21 i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~-~~Gk~L~D~~~~L~~ 70 (92)
T 1wxv_A 21 LHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI-FKGKSLKEMETPLSA 70 (92)
T ss_dssp EEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE-ETTEEECCSSSBHHH
T ss_pred EEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE-ECCeecCCCcccHHH
Confidence 346664 999999999999999887653333 3444 4333555665
No 94
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=34.83 E-value=8.2 Score=27.46 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~ 58 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSD 58 (128)
T ss_dssp ---------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEE-EEECCEECCCCCchhh
Confidence 3478889999999999998888876533 3345554555666665
No 95
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=30.66 E-value=24 Score=24.20 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=21.8
Q ss_pred EEec-CCCchHhHHHHhhhhccCCCCC
Q psy8038 49 YLVP-SDLTVGQFYFLIRKRVQLRPED 74 (157)
Q Consensus 49 fLVp-~~~tv~qf~~iiRkrL~L~~~~ 74 (157)
.-|+ .+.||++|...|..+.++++++
T Consensus 21 v~v~~~~~Tv~~LK~kI~~~~gip~~~ 47 (107)
T 1wf9_A 21 VSVDGPHITVSQLKTLIQDQLQIPIHN 47 (107)
T ss_dssp EEECCTTSBHHHHHHHHHHHSCCCTTT
T ss_pred EEECCCCCcHHHHHHHHHHHhCcCccc
Confidence 3477 8899999999999999987654
No 96
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=30.07 E-value=38 Score=26.13 Aligned_cols=44 Identities=11% Similarity=0.119 Sum_probs=33.0
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 120 l~V~~s~TV~~LK~kI~~~~gIp~~~Qr-Li~~Gk~L~D~~tL~d 163 (189)
T 3q3f_A 120 LEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSD 163 (189)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCGGGCC-EEETTEECCTTCBGGG
T ss_pred EEeCCCCcHHHHHHHHHhccCCCHHHEE-EEECCEECCCCCCHHH
Confidence 4488999999999999999998876533 3346665566777776
No 97
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=30.02 E-value=66 Score=20.25 Aligned_cols=38 Identities=8% Similarity=-0.025 Sum_probs=26.1
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhh
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATM 91 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m 91 (157)
+-+|...|++++...+ +++++. +.+.+|+.+.+.+..+
T Consensus 18 ~~~~~~~tv~~Ll~~l----~~~~~~-v~vavN~~~v~~~~~L 55 (70)
T 1ryj_A 18 LESGAPRRIKDVLGEL----EIPIET-VVVKKNGQIVIDEEEI 55 (70)
T ss_dssp EEESSCCBHHHHHHHT----TCCTTT-EEEEETTEECCTTSBC
T ss_pred EECCCCCcHHHHHHHh----CCCCCC-EEEEECCEECCCcccC
Confidence 5678889999977654 555544 5688998766555444
No 98
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=29.64 E-value=76 Score=21.67 Aligned_cols=50 Identities=8% Similarity=0.063 Sum_probs=36.9
Q ss_pred ceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEc---C--ccCCCchhhh---ccee
Q psy8038 47 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN---N--VIPPTSATMG---SLYQ 96 (157)
Q Consensus 47 ~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVn---n--~lps~s~~m~---~lY~ 96 (157)
.-+-||.+++..++..-+|.+.++.+.+.+-+..- + ...+.+..+. ++|+
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHH
Confidence 35678999999999999999999998888877653 2 2335555554 4455
No 99
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=29.52 E-value=58 Score=23.76 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=33.4
Q ss_pred CCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEc
Q psy8038 40 RIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN 81 (157)
Q Consensus 40 ~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVn 81 (157)
++|+..-+...|..+.||++.+..|=+++++...+. |-+|.
T Consensus 17 ~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 17 RMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp ECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred EcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 367777788999999999999999999999986544 55553
No 100
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=29.15 E-value=12 Score=27.98 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred EecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 50 LVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 50 LVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
-|+.+.||+++...|..+.++++++--.+ .++.....+.++++
T Consensus 16 ~V~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~d 58 (152)
T 3u5c_f 16 EVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSD 58 (152)
T ss_dssp --------------------------------------------
T ss_pred EECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEEccccCcHHH
Confidence 47888999999999999999887654333 45554556666665
No 101
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=29.09 E-value=86 Score=21.75 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=34.8
Q ss_pred CCcceEE--ecCCCchHhHHHHhhhhccCCCC--------------CeEEEEEcCc-cCCCchhhhccee
Q psy8038 44 LDKKKYL--VPSDLTVGQFYFLIRKRVQLRPE--------------DALFFFVNNV-IPPTSATMGSLYQ 96 (157)
Q Consensus 44 Ldk~KfL--Vp~~~tv~qf~~iiRkrL~L~~~--------------~alfLfVnn~-lps~s~~m~~lY~ 96 (157)
++.++|- |+.+.||+++...|..+.++.++ ..+-|..++. |-..+.++++ |.
T Consensus 15 l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d-yg 83 (105)
T 1v2y_A 15 MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD-YG 83 (105)
T ss_dssp SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH-HT
T ss_pred cCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH-cC
Confidence 3444443 88999999999999998877552 1345555554 4445577776 55
No 102
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.41 E-value=40 Score=23.25 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=30.7
Q ss_pred EecCCCchHhHHHHhhhhccCCCCCeEEEEEc-CccCCCchhhhcc
Q psy8038 50 LVPSDLTVGQFYFLIRKRVQLRPEDALFFFVN-NVIPPTSATMGSL 94 (157)
Q Consensus 50 LVp~~~tv~qf~~iiRkrL~L~~~~alfLfVn-n~lps~s~~m~~l 94 (157)
=|+.+.||++|...|..+-++.+++--.++.. +. ...+.+++++
T Consensus 24 ~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~ 68 (100)
T 2dzm_A 24 VLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSL 68 (100)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHH
T ss_pred EECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHc
Confidence 37888999999999999999987654334332 34 3555566643
No 103
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=27.91 E-value=39 Score=23.09 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=29.6
Q ss_pred eEEecCCCchHhHHHHhhhhc--cCC-CCCeEEEEEcCccCCCchhhhcc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRV--QLR-PEDALFFFVNNVIPPTSATMGSL 94 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL--~L~-~~~alfLfVnn~lps~s~~m~~l 94 (157)
.+=|+.+.||+++...|..++ ... .++- |+.++.....+.++++.
T Consensus 39 ~l~v~~~~TV~~LK~~I~~~~~g~pp~~~Qr--LIy~Gk~L~D~~tL~~y 86 (99)
T 2kdb_A 39 TISCFLNWTVGKLKTHLSNVYPSKPLTKDQR--LVYSGRLLPDHLQLKDI 86 (99)
T ss_dssp EEEECTTSBHHHHHHHHHHHSTTCCCTTTCC--EEETTEEECTTSBTHHH
T ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCChhhEE--EEECCEECCCCCCHHHH
Confidence 344699999999999999876 333 2333 33455555566677753
No 104
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=27.88 E-value=39 Score=23.28 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=25.0
Q ss_pred cccCCCccchhhhhhhcccCCCcceEEEEecCCCcc
Q psy8038 116 LVPSDLTVGQFYFLIRKREHHEEDFFLYIAYSDENV 151 (157)
Q Consensus 116 LvP~~ltv~qf~~~lr~r~~~~~a~~L~v~y~~~~~ 151 (157)
.||.|++..|...-|+.|+..+ -++++-|++|..
T Consensus 27 rvP~di~~~~L~dKi~~RLk~~--~~~l~~ykde~~ 60 (85)
T 1ip9_A 27 MLKGDTTYKELRSKIAPRIDTD--NFKLQTKLFDGS 60 (85)
T ss_dssp EECSCCCHHHHHHHHHHHHTSS--CEEEEECCSSSC
T ss_pred ECCCCCCHHHHHHHHHHHhccc--ceEEEEecCCCC
Confidence 4888999999998999998862 444555666644
No 105
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=27.79 E-value=1.4e+02 Score=20.65 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=34.9
Q ss_pred ceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhcc
Q psy8038 47 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 94 (157)
Q Consensus 47 ~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~l 94 (157)
..|-|-.+.++..++.....+.++++++--|+|-+..+.. +.|.+++
T Consensus 43 i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~-~~Tp~dl 89 (106)
T 2eke_C 43 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDL 89 (106)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCTTTT
T ss_pred EEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCC-CCCHHHc
Confidence 3577999999999999999999999887677775444443 3444443
No 106
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=27.75 E-value=42 Score=21.10 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.1
Q ss_pred HHhhhhccCCCCCeEEEEEcC
Q psy8038 62 FLIRKRVQLRPEDALFFFVNN 82 (157)
Q Consensus 62 ~iiRkrL~L~~~~alfLfVnn 82 (157)
.-+|++|++.+++.+.+.+.+
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 458999999999999998864
No 107
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=26.70 E-value=1.4e+02 Score=19.77 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=41.1
Q ss_pred CCeeEEEEEcCCCCCCCCCCcceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 26 PDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 26 P~kIPVIvEr~~~s~lp~Ldk~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+++|=|.|--..++ ...|-|..+.+++.++.....+.++++++--|+|=+..+- .+.|.++
T Consensus 15 ~~~i~ikV~~~~g~------~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~d 75 (93)
T 2d07_B 15 NDHINLKVAGQDGS------VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQ 75 (93)
T ss_dssp CCEEEEEEECTTSC------EEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTT
T ss_pred CCeEEEEEECCCCC------EEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcC-CCCCHHH
Confidence 46666666532221 2367799999999999999999999988756666444443 3344443
No 108
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.70 E-value=34 Score=22.96 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=30.6
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+=|+.+.||++|...|...-++.+++--.+ .++.....+ ++++
T Consensus 22 l~v~~~~TV~~lK~~I~~~tgip~~~QkLi-~~Gk~L~D~-tL~~ 64 (96)
T 1wgg_A 22 VELNTDEPPMVFKAQLFALTGVQPARQKVM-VKGGTLKDD-DWGN 64 (96)
T ss_dssp EEEESSSCHHHHHHHHHHHTCCCTTTSCCE-ETTEECCSS-CCCS
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCcCCCCC-CHHH
Confidence 348899999999999999999886543222 455555555 6655
No 109
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=26.22 E-value=68 Score=23.08 Aligned_cols=42 Identities=12% Similarity=0.235 Sum_probs=31.5
Q ss_pred ecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 51 VPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 51 Vp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
|..+.||.++...|..+.++.+++--.+| ++.+...+.|+++
T Consensus 18 ve~sdTV~~lK~kI~~~~giPp~qQrLI~-~Gk~LeD~kTL~d 59 (118)
T 4ajy_B 18 AKESSTVFELKRIVEGILKRPPDEQRLYK-DDQLLDDGKTLGE 59 (118)
T ss_dssp EETTSBHHHHHHHHHHHHCCCGGGEEEEE-TTEECCTTSBTTT
T ss_pred cCCCChHHHHHHHHHHHHCCCHHHeEEEe-CCeECCCcCCHHH
Confidence 77889999999999999999887654444 4555555556654
No 110
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.99 E-value=24 Score=23.61 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=29.1
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
+=|+.+.||++|...|..+.++++++--.+ .++... .+.++++
T Consensus 31 i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~~Gk~L-dd~tL~~ 73 (95)
T 1v86_A 31 VKVPLDSTGSELKQKIHSITGLPPAMQKVM-YKGLVP-EDKTLRE 73 (95)
T ss_dssp EEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SSSBCC-SSSBHHH
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCeeC-CcCcHHH
Confidence 458999999999999999999886553222 344333 3445554
No 111
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=24.84 E-value=54 Score=19.72 Aligned_cols=21 Identities=14% Similarity=0.282 Sum_probs=17.9
Q ss_pred HHhhhhccCCCCCeEEEEEcC
Q psy8038 62 FLIRKRVQLRPEDALFFFVNN 82 (157)
Q Consensus 62 ~iiRkrL~L~~~~alfLfVnn 82 (157)
.-+|++|++.+++.+.+.+.+
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 458999999999999988864
No 112
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=24.26 E-value=55 Score=21.24 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=27.5
Q ss_pred EEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCch
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSA 89 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~ 89 (157)
.=+|...|++++. +.|++++++. -+++|+...+.+.
T Consensus 15 ~ev~~g~Tv~dLL----~~Lgl~~~~V-vV~vNG~~v~~d~ 50 (74)
T 2l32_A 15 VAVDDDGTYADLV----RAVDLSPHEV-TVLVDGRPVPEDQ 50 (74)
T ss_dssp EECSTTCSHHHHH----HTTCCCSSCC-CEECCCCCCCTTS
T ss_pred EEcCCCCcHHHHH----HHcCCCcceE-EEEECCEECCHHH
Confidence 4589999999955 5789998887 4888986555554
No 113
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.73 E-value=75 Score=22.98 Aligned_cols=43 Identities=7% Similarity=-0.044 Sum_probs=31.9
Q ss_pred EecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 50 LVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 50 LVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
-++.+.||++|...|-...+.+++.--.+| ++.....+.|+++
T Consensus 32 ~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy-~GKiLKD~eTL~~ 74 (118)
T 2daf_A 32 PFKVDTILKYLKDHFSHLLGIPHSVLQIRY-SGKILKNNETLVQ 74 (118)
T ss_dssp EECSSSCSHHHHHHHHHHHTCCTTTEEEEE-TTEEECSSCCHHH
T ss_pred EeCCCCcHHHHHHHHHhhhCCChHHEEEEE-CCeEcCCcchHHH
Confidence 478899999999999999998887754444 4544455666653
No 114
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=23.05 E-value=67 Score=20.78 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=28.6
Q ss_pred EEecCCCchHhHHHHhhhhcc------CCCC----CeEEEEEcCccCCCchhhh
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQ------LRPE----DALFFFVNNVIPPTSATMG 92 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~------L~~~----~alfLfVnn~lps~s~~m~ 92 (157)
+-+|...||+++...|..+.. ++.+ ..+-++||+.....+..+.
T Consensus 22 ~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~ 75 (89)
T 3po0_A 22 VDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATA 75 (89)
T ss_dssp EECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCC
T ss_pred EECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccC
Confidence 346778899999998876642 2221 2367889986555554443
No 115
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=21.96 E-value=92 Score=19.06 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=29.5
Q ss_pred cceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhh
Q psy8038 46 KKKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATM 91 (157)
Q Consensus 46 k~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m 91 (157)
...+-+|...|+.++...+...+. .+++-.-||+.+.+.+..+
T Consensus 10 g~~~~~~~g~T~~dla~~i~~~l~---~~~vaa~vNg~lvdl~~~L 52 (73)
T 2kmm_A 10 GEIKRLPQGATALDFAYSLHSDLG---DHCIGAKVNHKLVPLSYVL 52 (73)
T ss_dssp CCEEEECTTCBHHHHHHHHCSHHH---HTEEEEEETTEECCTTCBC
T ss_pred CCEEEcCCCCcHHHHHHHHhhccc---cceEEEEECCEEeCCCcCc
Confidence 345678999999999887744432 3466677898766655443
No 116
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=21.22 E-value=85 Score=20.63 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=31.4
Q ss_pred ceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhh
Q psy8038 47 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATM 91 (157)
Q Consensus 47 ~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m 91 (157)
..+.+|...|+.+|.+.|...++ ..++.--||+.+.+.+..+
T Consensus 16 ~~~~lp~GaT~~D~A~~Ih~~lg---~~~v~AkVNG~~v~L~~~L 57 (78)
T 3hvz_A 16 DVISLPIGSTVIDFAYAIHSAVG---NRMIGAKVDGRIVPIDYKV 57 (78)
T ss_dssp CEEEEETTCBHHHHHHHHCHHHH---HTEEEEEETTEEECTTCBC
T ss_pred CEEEecCCCCHHHHHHHhhhhhh---cceEEEEECCEEcCCCccc
Confidence 45679999999999999877775 3567778888765555444
No 117
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=21.01 E-value=66 Score=23.39 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=32.6
Q ss_pred eEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhc
Q psy8038 48 KYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGS 93 (157)
Q Consensus 48 KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~ 93 (157)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++
T Consensus 110 ~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~g~~L~D~~tL~~ 154 (172)
T 3u30_A 110 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSD 154 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ETTEECCTTSBSGG
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCceeEEEE-ECCccCCCCCcHHH
Confidence 3448889999999999999999987654333 45555556667765
No 118
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.69 E-value=1.6e+02 Score=20.19 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=35.2
Q ss_pred ceEEecCCCchHhHHHHhhhhccCCCCCeEEEEEcCccCCCchhhhcc
Q psy8038 47 KKYLVPSDLTVGQFYFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSL 94 (157)
Q Consensus 47 ~KfLVp~~~tv~qf~~iiRkrL~L~~~~alfLfVnn~lps~s~~m~~l 94 (157)
..|-|-.+.++..++.....+.++++++--|+|=+..|.. +.|.+++
T Consensus 37 i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~-~~Tp~dl 83 (104)
T 1wz0_A 37 VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQL 83 (104)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCT-TSCTTTT
T ss_pred EEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCC-CCCHHHc
Confidence 3677999999999999999999999887667775555543 3344443
No 119
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=20.55 E-value=54 Score=21.82 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.6
Q ss_pred EEecCCCchHhHHHHhhhhccCC
Q psy8038 49 YLVPSDLTVGQFYFLIRKRVQLR 71 (157)
Q Consensus 49 fLVp~~~tv~qf~~iiRkrL~L~ 71 (157)
-.||.+.+..+|..-|+.|+++.
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHccc
Confidence 36999999999999999999964
No 120
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=20.40 E-value=83 Score=19.75 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=24.8
Q ss_pred cCCCchHhHHHHhhhhcc-----CCCCCeEEEEEcCccCCCchhh
Q psy8038 52 PSDLTVGQFYFLIRKRVQ-----LRPEDALFFFVNNVIPPTSATM 91 (157)
Q Consensus 52 p~~~tv~qf~~iiRkrL~-----L~~~~alfLfVnn~lps~s~~m 91 (157)
+...|++++...|..+.. +.. ..+.++||+...+.+..+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~-~~~~v~vN~~~v~~~~~l 66 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALED-GKLLAAVNQTLVSFDHPL 66 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCC-TTCEEEETTEECCTTCBC
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcC-CCEEEEECCEECCCCCCC
Confidence 466799999888865521 332 235789998655444444
Done!