RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8038
(157 letters)
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold,
protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Length = 117
Score = 136 bits (344), Expect = 1e-42
Identities = 67/153 (43%), Positives = 87/153 (56%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MK+ +KE+H E R E KIR KYPDRVPVIVEK ++I D+DK+KYLVPSD+TV QF
Sbjct: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
++IRKR+QL E A+F FV+ +P +S TMG LY+
Sbjct: 61 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYE------------------------ 96
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
+ +ED FLY+AYS EN +G
Sbjct: 97 -------------KEKDEDGFLYVAYSGENTFG 116
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical
E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL
activation, thiolation; 1.91A {Saccharomyces cerevisiae}
PDB: 2kq7_A 2zpn_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Length = 118
Score = 134 bits (339), Expect = 9e-42
Identities = 67/153 (43%), Positives = 92/153 (60%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MK +K E+PFEKRKAE E+I ++ +R+PVI EKA K+ I ++DK+KYLVP+DLTVGQF
Sbjct: 3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQF 62
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
++IRKR+ L PE A+F FVN+ +PPT+A M ++YQ
Sbjct: 63 VYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQ------------------------ 98
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
EH ++D FLY+ YS EN +G
Sbjct: 99 -------------EHKDKDGFLYVTYSGENTFG 118
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor,
transport protein; 2.40A {Bombyx mori}
Length = 125
Score = 131 bits (330), Expect = 2e-40
Identities = 110/153 (71%), Positives = 114/153 (74%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MKFQYKEEH FEKRKAEGEKIRRKYPDRVPVIVEKAPKAR+GDLDKKKYLVPSDLTVGQF
Sbjct: 9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 68
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
YFLIRKR+ LRPEDALFFFVNNVIPPTSATMGSLYQ
Sbjct: 69 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQ------------------------ 104
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
EHH+EDFFLYIA+SDENVYG
Sbjct: 105 -------------EHHDEDFFLYIAFSDENVYG 124
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1;
autophagy, ubiquitin homolog, structural genomics
consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB:
2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Length = 110
Score = 125 bits (316), Expect = 2e-38
Identities = 93/146 (63%), Positives = 103/146 (70%), Gaps = 37/146 (25%)
Query: 3 FQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYF 62
FQYKE+HPFE RK EGEKIR+KYPDRVPVIVEKAPKAR+ DLDK+KYLVPSDLTVGQFYF
Sbjct: 2 FQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYF 61
Query: 63 LIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLT 122
LIRKR+ LRPEDALFFFVNN IPPTSATMG LY+
Sbjct: 62 LIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYE-------------------------- 95
Query: 123 VGQFYFLIRKREHHEEDFFLYIAYSD 148
++HEED+FLY+AYSD
Sbjct: 96 -----------DNHEEDYFLYVAYSD 110
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative;
autophagy, lipidation, ubiquitin-like, S protein; 2.30A
{Trypanosoma brucei}
Length = 119
Score = 125 bits (316), Expect = 3e-38
Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
+YK H FE R+++ K+R ++PDR+P+I EK + IG+LD+ K+LVPSDLTVGQF
Sbjct: 4 KDSKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQF 63
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
++RKRVQL E ALF + N+ + P+SA M +Y
Sbjct: 64 VSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYS------------------------ 99
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
++ +ED FLY+ YS E +G
Sbjct: 100 -------------KYKDEDGFLYMKYSGEATFG 119
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor;
autophagy, LC3, microtubule-associated protein 1 light
chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein;
1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B
2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Length = 130
Score = 119 bits (298), Expect = 2e-35
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 39/157 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKAR-IGDLDKKKYLVPSDLTVGQ 59
+ +K+ FE+R + IR ++P ++PVI+E+ + + LDK K+LVP + + +
Sbjct: 8 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 67
Query: 60 FYFLIRKRVQLRPEDALFFFVN-NVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVP 118
+IR+R+QL A F VN + + S + +Y+
Sbjct: 68 LIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYE---------------------- 105
Query: 119 SDLTVGQFYFLIRKREHHEEDFFLYIAYSDENVYGAS 155
+ED FLY+ Y+ + +G
Sbjct: 106 ---------------SEKDEDGFLYMVYASQETFGMK 127
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.058
Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 43/118 (36%)
Query: 69 QLRPED------ALFFFVNNV-IPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLV---P 118
L P + L F + IP + ++ +++ + + K LV P
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPT--ILLSLIWFDVIKSDVM-VVVNKLHKYSLVEKQP 421
Query: 119 SDLTVG--QFYFLIR-----KREHH---------------------EED--FFLYIAY 146
+ T+ Y ++ + H D F+ +I +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.063
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 11/35 (31%)
Query: 12 EK---RKAEGE-KIRRKY-PDRVPVIVEKAPKARI 41
EK +K + K+ Y D P + A KA +
Sbjct: 18 EKQALKKLQASLKL---YADDSAPAL---AIKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.11
Identities = 27/145 (18%), Positives = 43/145 (29%), Gaps = 47/145 (32%)
Query: 10 PFEKRKAEGEKIRRKYPDRVPVIV-------EKAPKARIGDLDKKKYLV-PSDLTV---- 57
PF +RK K ++ +PV A DL K D+ +
Sbjct: 408 PFSERKL---KFSNRF---LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 58 ---GQ-------------FYFLIRKRVQLRPEDALFFFVNNVI---PPTSATMGSLYQVI 98
G +IR V+ E F +++ P ++ +G L
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKW--ETTTQFKATHILDFGPGGASGLGVLTHRN 519
Query: 99 VEKAPKARI---GDLDKKKYLVPSD 120
+ R+ G LD P D
Sbjct: 520 KD-GTGVRVIVAGTLDIN----PDD 539
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein
turnover/protein turnover complex; 1.97A {Saccharomyces
cerevisiae} PDB: 2dym_A
Length = 297
Score = 27.1 bits (59), Expect = 2.4
Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 19 EKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLV-PSDLTVGQFYFLIRKRVQLRPEDALF 77
KI P +P+I++ + + + + + + T+ I + + +
Sbjct: 193 NKISSSRPRHIPLIIQTSRTSGTFRISQPTISMTGVNPTLKDIEGDILDVKEGINGNDVM 252
Query: 78 FFVNNVIPPTSATMGSLYQ 96
+ P + LY
Sbjct: 253 VICQGIEIPWHMLLYDLYS 271
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 26.4 bits (59), Expect = 4.2
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 87 TSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLTVG 124
+G ++ + ++A R+ D++ ++YL D G
Sbjct: 15 IPRGVGQIHPIFADRAENCRVWDVEGREYL---DFAGG 49
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal
enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens}
SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P*
1e3c_P* 1e33_P*
Length = 489
Score = 26.5 bits (59), Expect = 4.7
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 130 IRKREHHEEDFFLYIAYS 147
+ + + FFLY A
Sbjct: 191 MADAQRQDRPFFLYYASH 208
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 25.6 bits (57), Expect = 8.5
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 29 VPVIVEKAPKARIGDLDKKKYL 50
P+++ + +R D+D Y+
Sbjct: 82 FPLVIAQGTGSRFQDVDGHAYV 103
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 25.6 bits (57), Expect = 8.8
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 24 KYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVG 58
+ P+ P++++ I D+D KYL D T G
Sbjct: 19 RDPELFPLVIDHGEGVWIYDVDGNKYL---DFTSG 50
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 25.7 bits (57), Expect = 9.6
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 29 VPVIVEKAPKARIGDLDKKKYL 50
+ + A D+D YL
Sbjct: 39 HGLFISDAQGVHKTDVDGNVYL 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.141 0.407
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,555,134
Number of extensions: 152513
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 36
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)