RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8038
(157 letters)
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD,
Gate-16 {Cow (Bos taurus) [TaxId: 9913]}
Length = 116
Score = 156 bits (395), Expect = 9e-51
Identities = 67/153 (43%), Positives = 87/153 (56%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MK+ +KE+H E R E KIR KYPDRVPVIVEK ++I D+DK+KYLVPSD+TV QF
Sbjct: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
++IRKR+QL E A+F FV+ +P +S TMG LY+
Sbjct: 61 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYE------------------------ 96
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
+ +ED FLY+AYS EN +G
Sbjct: 97 -------------KEKDEDGFLYVAYSGENTFG 116
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein
GABARAP {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 151 bits (383), Expect = 7e-49
Identities = 107/153 (69%), Positives = 112/153 (73%), Gaps = 37/153 (24%)
Query: 1 MKFQYKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
MKF YKEEHPFEKR++EGEKIR+KYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
Sbjct: 3 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 62
Query: 61 YFLIRKRVQLRPEDALFFFVNNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSD 120
YFLIRKR+ LR EDALFFFVNNVIPPTSATMG LYQ
Sbjct: 63 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQ------------------------ 98
Query: 121 LTVGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
EHHEEDFFLYIAYSDE+VYG
Sbjct: 99 -------------EHHEEDFFLYIAYSDESVYG 118
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B
light chain 3B {Human (Homo sapiens) [TaxId: 9606]}
Length = 119
Score = 127 bits (320), Expect = 3e-39
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 39/151 (25%)
Query: 5 YKEEHPFEKRKAEGEKIRRKYPDRVPVIVEKAPKAR-IGDLDKKKYLVPSDLTVGQFYFL 63
+K+ FE+R + IR ++P ++PVI+E+ + + LDK K+LVP + + + +
Sbjct: 6 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 65
Query: 64 IRKRVQLRPEDALFFFVN-NVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYLVPSDLT 122
IR+R+QL A F VN + + S + +Y
Sbjct: 66 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVY--------------------------- 98
Query: 123 VGQFYFLIRKREHHEEDFFLYIAYSDENVYG 153
+ED FLY+ Y+ + +G
Sbjct: 99 ----------ESEKDEDGFLYMVYASQETFG 119
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 28.7 bits (63), Expect = 0.30
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 11 FEKRKAEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYL 50
++R I R P+ ++A R+ D++ ++YL
Sbjct: 7 MQRRSQA---IPRGVGQIHPIFADRAENCRVWDVEGREYL 43
Score = 28.7 bits (63), Expect = 0.34
Identities = 8/36 (22%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 81 NNVIPPTSATMGSLYQVIVEKAPKARIGDLDKKKYL 116
+ IP +G ++ + ++A R+ D++ ++YL
Sbjct: 11 SQAIPRG---VGQIHPIFADRAENCRVWDVEGREYL 43
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 27.8 bits (61), Expect = 0.60
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 27 DRVPVIVEKAPKARIGDLDKKKYL 50
D +PV++++A + D++ K+Y
Sbjct: 19 DPIPVVLKRAKGVFVYDVNDKRYY 42
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 27.0 bits (58), Expect = 1.1
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 21 IRRKYPDRVPVIVEKAPKARIGDLDKKKYL 50
+ R P+I+E+A + + D D + L
Sbjct: 15 LVRYGGTFEPMIIERAKGSFVYDADGRAIL 44
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 26.7 bits (58), Expect = 1.2
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 24 KYPDRVPVIVEKAPKARIGDLDKKKYL 50
K P++ ++ A D+D +Y+
Sbjct: 29 KSVGGQPIVFDRVKDAYAWDVDGNRYI 55
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 26.1 bits (56), Expect = 2.0
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 16 AEGEKIRRKYPDRVPVIVEKAPKARIGDLDKKKYL 50
+ I+ E++ + D+D + L
Sbjct: 22 KQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRML 56
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 25.5 bits (55), Expect = 3.1
Identities = 4/24 (16%), Positives = 14/24 (58%)
Query: 27 DRVPVIVEKAPKARIGDLDKKKYL 50
++ +++ + AR+ D + +Y+
Sbjct: 17 NKHDLLIVRGQGARVWDAEGNEYI 40
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 404
Score = 24.7 bits (53), Expect = 5.8
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 28 RVPVIVEKAPKARIGDLDKKKYL 50
+PV +E+ + D++ +KY
Sbjct: 22 PLPVALERGKGIYLWDVEGRKYF 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.141 0.407
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 624,322
Number of extensions: 29855
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 16
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.8 bits)