BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8039
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SS3|A Chain A, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS3|B Chain B, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS3|C Chain C, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS3|D Chain D, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS4|A Chain A, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS4|B Chain B, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS4|C Chain C, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS4|D Chain D, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS5|A Chain A, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
pdb|3SS5|B Chain B, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
pdb|3SS5|C Chain C, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
pdb|3SS5|D Chain D, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
Length = 479
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 66/84 (78%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
+VADYIPQLA+ P WGVSVCTVDGQR+SIG T +PF +QSC KPL YAIA+ +L E
Sbjct: 126 KVADYIPQLAKFSPDLWGVSVCTVDGQRHSIGDTKVPFCLQSCVKPLKYAIAVNDLGTEY 185
Query: 82 VHKYVGQEPSGRNFNELILDHNSE 105
VH+YVG+EPSG FN+L L+ + +
Sbjct: 186 VHRYVGKEPSGLRFNKLFLNEDDK 209
>pdb|3UNW|A Chain A, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UNW|B Chain B, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UNW|C Chain C, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UNW|D Chain D, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UO9|A Chain A, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
pdb|3UO9|B Chain B, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
pdb|3UO9|C Chain C, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
pdb|3UO9|D Chain D, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
Length = 534
Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 65/84 (77%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
+VADYIPQLA+ P WGVSVCTVDGQR+S G T +PF +QSC KPL YAIA+ +L E
Sbjct: 175 KVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLGTEY 234
Query: 82 VHKYVGQEPSGRNFNELILDHNSE 105
VH+YVG+EPSG FN+L L+ + +
Sbjct: 235 VHRYVGKEPSGLRFNKLFLNEDDK 258
>pdb|3CZD|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
L-Glutamate
pdb|3VOY|A Chain A, Crystal Structure Of Human Glutaminase In Apo Form
pdb|3VOZ|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
Bptes
pdb|3VP0|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
L-Glutamine
pdb|3VP1|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
L-Glutamate And Bptes
pdb|3VP2|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
Inhibitor 2
pdb|3VP3|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
Inhibitor 3
Length = 315
Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 65/84 (77%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
+VADYIPQLA+ P WGVSVCTVDGQR+S G T +PF +QSC KPL YAIA+ +L E
Sbjct: 27 KVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLGTEY 86
Query: 82 VHKYVGQEPSGRNFNELILDHNSE 105
VH+YVG+EPSG FN+L L+ + +
Sbjct: 87 VHRYVGKEPSGLRFNKLFLNEDDK 110
>pdb|3VP4|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
Inhibitor 4
Length = 316
Score = 118 bits (296), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 65/84 (77%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
+VADYIPQLA+ P WGVSVCTVDGQR+S G T +PF +QSC KPL YAIA+ +L E
Sbjct: 28 KVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLGTEY 87
Query: 82 VHKYVGQEPSGRNFNELILDHNSE 105
VH+YVG+EPSG FN+L L+ + +
Sbjct: 88 VHRYVGKEPSGLRFNKLFLNEDDK 111
>pdb|3IF5|A Chain A, Crystal Structure Analysis Of Mglu
pdb|3IH8|A Chain A, Crystal Structure Analysis Of Mglu In Its Native Form
pdb|3IH8|B Chain B, Crystal Structure Analysis Of Mglu In Its Native Form
pdb|3IH9|A Chain A, Crystal Structure Analysis Of Mglu In Its Tris Form
pdb|3IH9|B Chain B, Crystal Structure Analysis Of Mglu In Its Tris Form
pdb|3IHA|A Chain A, Crystal Structure Analysis Of Mglu In Its Glutamate Form
pdb|3IHA|B Chain B, Crystal Structure Analysis Of Mglu In Its Glutamate Form
pdb|3IHB|A Chain A, Crystal Structure Analysis Of Mglu In Its Tris And
Glutamate Form
pdb|3IHB|B Chain B, Crystal Structure Analysis Of Mglu In Its Tris And
Glutamate Form
pdb|3AGD|A Chain A, Crystal Structure Of Mglu In Its Native Form In The
Presence Of 4.3m Nacl
pdb|3AGD|B Chain B, Crystal Structure Of Mglu In Its Native Form In The
Presence Of 4.3m Nacl
pdb|3AGE|A Chain A, Crystal Structure Of Mglu In Its L-Glutamate Binding Form
In The Presence Of 4.3m Nacl
pdb|3AGE|B Chain B, Crystal Structure Of Mglu In Its L-Glutamate Binding Form
In The Presence Of 4.3m Nacl
Length = 456
Score = 75.9 bits (185), Expect = 6e-15, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 50/83 (60%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
+ A YIP LA ADP +G+++ T G+ + G ++ FTIQS SKP TYA AL +
Sbjct: 23 ETAQYIPVLAEADPDRFGIALATPTGRLHCAGDADVEFTIQSASKPFTYAAALVDRGFAA 82
Query: 82 VHKYVGQEPSGRNFNELILDHNS 104
V + VG PSG FNEL L+ S
Sbjct: 83 VDRQVGLNPSGEAFNELSLEAES 105
>pdb|1U60|A Chain A, Mcsg Apc5046 Probable Glutaminase Ybas
pdb|1U60|B Chain B, Mcsg Apc5046 Probable Glutaminase Ybas
pdb|1U60|C Chain C, Mcsg Apc5046 Probable Glutaminase Ybas
pdb|1U60|D Chain D, Mcsg Apc5046 Probable Glutaminase Ybas
Length = 310
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
Q ADYIP LA + V++ T DG YS G ++ F ++S SK T A+ALE++ +
Sbjct: 25 QNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQA 84
Query: 82 VHKYVGQEPSGRNFNELI 99
V +G +P+G FN +I
Sbjct: 85 VQDKIGADPTGLPFNSVI 102
>pdb|2PBY|A Chain A, Probable Glutaminase From Geobacillus Kaustophilus Hta426
pdb|2PBY|B Chain B, Probable Glutaminase From Geobacillus Kaustophilus Hta426
pdb|2PBY|C Chain C, Probable Glutaminase From Geobacillus Kaustophilus Hta426
pdb|2PBY|D Chain D, Probable Glutaminase From Geobacillus Kaustophilus Hta426
Length = 308
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
+VADYIP L +A+P +++ T D + S G + T+QS SK + A+ L + ++E
Sbjct: 24 KVADYIPALGKANPNELSIAIYTPDDEVVSAGDVTVKVTLQSISKIIALALVLIDRGEDE 83
Query: 82 VHKYVGQEPSGRNFNEL 98
V VG EP+ F+ +
Sbjct: 84 VFHKVGMEPTDYPFHSI 100
>pdb|3AGF|A Chain A, Crystal Structure Of Bacillus Glutaminase In The Presence
Of 4.3m Nacl
pdb|3AGF|B Chain B, Crystal Structure Of Bacillus Glutaminase In The Presence
Of 4.3m Nacl
Length = 327
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
Q A+YIP L + + G+ V DG G N+ FT+QS SK +++ A
Sbjct: 33 QSANYIPALGKVNDSQLGICVLEPDGTMIHAGDWNVSFTMQSISKVISFIAACMSRGIPY 92
Query: 82 VHKYVGQEPSGRNFNELI 99
V V EP+G FN +I
Sbjct: 93 VLDRVDVEPTGDAFNSII 110
>pdb|2OSU|A Chain A, Probable Glutaminase From Bacillus Subtilis Complexed With
6-diazo-5-oxo-l-norleucine
pdb|2OSU|B Chain B, Probable Glutaminase From Bacillus Subtilis Complexed With
6-diazo-5-oxo-l-norleucine
pdb|3BRM|A Chain A, Crystal Structure Of The Covalent Complex Between The
Bacillus Subtilis Glutaminase Ybgj And
5-Oxo-L-Norleucine Formed By Reaction Of The Protein
With 6-Diazo-5-Oxo-L- Norleucine
pdb|3BRM|B Chain B, Crystal Structure Of The Covalent Complex Between The
Bacillus Subtilis Glutaminase Ybgj And
5-Oxo-L-Norleucine Formed By Reaction Of The Protein
With 6-Diazo-5-Oxo-L- Norleucine
Length = 330
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
Q A+YIP L + + G+ V DG G N+ FT QS SK +++ A
Sbjct: 36 QSANYIPALGKVNDSQLGICVLEPDGTXIHAGDWNVSFTXQSISKVISFIAACXSRGIPY 95
Query: 82 VHKYVGQEPSGRNFNELI 99
V V EP+G FN +I
Sbjct: 96 VLDRVDVEPTGDAFNSII 113
>pdb|1MKI|A Chain A, Crystal Structure Of Bacillus Subtilis Probable
Glutaminase, Apc1040
pdb|1MKI|B Chain B, Crystal Structure Of Bacillus Subtilis Probable
Glutaminase, Apc1040
Length = 330
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
Q A+YIP L + + G+ V DG G N+ FT Q SK +++ A
Sbjct: 36 QSANYIPALGKVNDSQLGICVLEPDGTXIHAGDWNVSFTXQXISKVISFIAACXSRGIPY 95
Query: 82 VHKYVGQEPSGRNFNELI 99
V V EP+G FN +I
Sbjct: 96 VLDRVDVEPTGDAFNSII 113
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide
Ser-Cys-Ser-Cys(Gg) Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 14/61 (22%)
Query: 18 LFLRQVADYIP--------------QLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQS 63
L L + ADYI + R YWG++V + GQ + + K I I+S
Sbjct: 18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77
Query: 64 C 64
C
Sbjct: 78 C 78
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 14/61 (22%)
Query: 18 LFLRQVADYIP--------------QLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQS 63
L L + ADYI + R YWG++V + GQ + + K I I+S
Sbjct: 17 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 76
Query: 64 C 64
C
Sbjct: 77 C 77
>pdb|3F9R|A Chain A, Crystal Structure Of Trypanosoma Brucei
Phosphomannosemutase, Tb.10.700.370
pdb|3F9R|B Chain B, Crystal Structure Of Trypanosoma Brucei
Phosphomannosemutase, Tb.10.700.370
Length = 246
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 47 GQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHKYVGQEPSGRNFNELILDHNS 104
G +YSIG I F + TY + E D EE+H + + G N E+ D +
Sbjct: 168 GLKYSIG-GQISFDVFPVGWDKTYCLQFVEDDFEEIHFFGDKTQEGGNDYEIYTDKRT 224
>pdb|3TAZ|A Chain A, Crystal Structure Of Nura Bound To Damp And Manganese
pdb|3TAZ|B Chain B, Crystal Structure Of Nura Bound To Damp And Manganese
Length = 471
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 57 IPFTIQSCSKPLTYAIALEELDQEEVHKYVGQE 89
IP + S+ + L+ELD+E+V Y+G++
Sbjct: 252 IPIEVLESSRGKSVDELLQELDEEKVELYLGKD 284
>pdb|2XNH|A Chain A, Structure And Function Of The Rad9-Binding Region Of The
Dna Damage Checkpoint Adaptor Topbp1
Length = 287
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 73 ALEELDQEEVHKYVGQEPSGRNFNEL 98
+LE+ +EEVHKYV Q GR + +L
Sbjct: 115 SLEKEKREEVHKYV-QXXGGRVYRDL 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,116,607
Number of Sequences: 62578
Number of extensions: 109307
Number of successful extensions: 223
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 19
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)