Query psy8039
Match_columns 105
No_of_seqs 113 out of 639
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 16:52:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u60_A Probable glutaminase YB 100.0 3E-41 1E-45 269.7 7.6 92 11-102 14-106 (310)
2 2pby_A Glutaminase; secsg, rik 100.0 5.4E-41 1.8E-45 268.1 7.0 97 6-102 8-105 (308)
3 3voy_A Glutaminase kidney isof 100.0 6.9E-41 2.4E-45 268.1 7.1 93 12-104 17-109 (315)
4 1mki_A Probable glutaminase YB 100.0 2.7E-40 9.2E-45 266.0 6.7 98 6-103 20-118 (330)
5 3agd_A Salt-tolerant glutamina 100.0 8.7E-40 3E-44 271.3 8.6 98 5-103 7-104 (456)
6 3uo9_A Glutaminase kidney isof 100.0 1.2E-38 3.9E-43 268.0 7.3 99 5-104 159-257 (534)
7 3i7j_A Beta-lactamase MB2281C; 96.6 0.0038 1.3E-07 47.3 6.1 49 27-75 4-52 (280)
8 3lez_A Beta-lactamase; antibio 96.2 0.0067 2.3E-07 45.6 5.1 63 27-90 5-68 (260)
9 4ewf_A Beta-lactamase; ABA-san 96.2 0.008 2.7E-07 44.8 5.3 45 31-76 21-65 (275)
10 3qhy_A Beta-lactamase; enyzme- 95.9 0.0047 1.6E-07 46.8 3.2 66 22-88 13-79 (271)
11 3ny4_A Beta-lactamase, penicil 95.2 0.0098 3.4E-07 44.8 2.5 62 27-89 6-68 (265)
12 4dxb_A RG13, maltose-binding p 95.0 0.018 6.1E-07 47.8 3.8 66 26-91 388-456 (637)
13 1ghp_A Beta-lactamase, penicil 95.0 0.033 1.1E-06 40.5 4.8 50 28-78 5-55 (258)
14 4euz_A Carbapenem-hydrolizing 94.8 0.023 8E-07 43.3 3.8 63 27-90 12-77 (283)
15 1n9b_A Penicillinase, beta-lac 94.8 0.022 7.5E-07 41.5 3.5 48 30-77 11-59 (265)
16 3cjm_A Putative beta-lactamase 94.4 0.049 1.7E-06 41.3 4.8 51 25-76 39-90 (282)
17 1m40_A TEM-1, beta-lactamase T 94.3 0.05 1.7E-06 39.4 4.4 47 31-77 12-59 (263)
18 1hzo_A Beta-lactamase; mixed a 94.2 0.053 1.8E-06 39.6 4.5 45 32-77 15-60 (271)
19 1g6a_A Beta-lactamase PSE-4; c 94.1 0.081 2.8E-06 38.3 5.2 47 30-77 15-62 (271)
20 2cc1_A Beta-lactamase, penicil 94.0 0.043 1.5E-06 39.4 3.6 42 34-76 14-56 (262)
21 3dw0_A Class A carbapenemase K 93.9 0.052 1.8E-06 41.6 4.0 51 25-76 31-82 (294)
22 2wk0_A Beta-lactamase; hydrola 93.8 0.063 2.1E-06 39.0 4.1 56 32-88 13-69 (265)
23 1bsg_A Beta lactamase, penicil 93.8 0.063 2.2E-06 38.6 4.1 44 33-77 13-57 (266)
24 3p09_A Beta-lactamase; structu 93.8 0.035 1.2E-06 42.5 2.8 54 23-77 24-78 (290)
25 3c5a_A Class A carbapenemase K 93.7 0.067 2.3E-06 38.5 4.0 44 32-76 13-57 (264)
26 2p74_A Beta-lactamase CTX-M-9A 93.6 0.085 2.9E-06 38.0 4.5 43 34-77 16-59 (263)
27 1bue_A Protein (imipenem-hydro 93.5 0.078 2.7E-06 38.5 4.1 44 33-77 14-58 (265)
28 1e25_A Extended-spectrum beta- 93.1 0.11 3.8E-06 37.9 4.4 43 33-76 15-58 (282)
29 1alq_A CP254 beta-lactamase; h 93.0 0.11 3.7E-06 39.0 4.4 57 21-78 43-100 (266)
30 1tvf_A PBP4, penicillin bindin 92.9 0.21 7.3E-06 39.8 6.2 39 39-77 37-75 (369)
31 2qpn_A Beta-lactamase GES-1; A 92.8 0.12 4E-06 38.2 4.3 41 35-76 36-77 (287)
32 1o7e_A L2 beta lactamase; hydr 92.7 0.12 4E-06 37.9 4.1 46 31-77 24-70 (276)
33 2wuq_A BLAB, beta-lactamase re 92.5 0.14 4.7E-06 38.1 4.4 43 34-77 18-61 (318)
34 3o3v_A Beta-lactamase, CLBP pr 92.4 0.18 6.3E-06 38.3 5.0 39 37-75 18-67 (335)
35 1w7f_A Beta-lactamase; hydrola 92.3 0.13 4.6E-06 38.6 4.1 63 27-90 50-113 (307)
36 2j9o_A TLL2115 protein; penici 91.1 0.44 1.5E-05 35.5 5.8 49 27-76 24-74 (298)
37 1w79_A D-alanyl-D-alanine carb 91.0 0.42 1.4E-05 39.5 6.0 50 34-83 19-69 (489)
38 1w5d_A Penicillin-binding prot 90.3 0.29 1E-05 39.9 4.4 51 33-83 21-72 (462)
39 2bcf_A Probable D-alanyl-D-ala 90.2 0.33 1.1E-05 37.1 4.4 44 37-80 19-63 (276)
40 1es5_A DD-transpeptidase; peni 89.7 0.24 8.4E-06 37.1 3.3 39 39-78 10-49 (262)
41 2qmi_A PBP related beta-lactam 89.6 0.49 1.7E-05 37.4 5.1 38 37-75 21-71 (447)
42 3tg9_A Penicillin-binding prot 89.6 0.56 1.9E-05 36.0 5.3 37 39-75 18-67 (356)
43 4gdn_A Protein FLP; peptidase, 89.5 0.5 1.7E-05 35.8 4.9 22 54-75 59-80 (342)
44 3mzf_A D-alanyl-D-alanine carb 89.3 0.59 2E-05 37.3 5.4 35 42-76 22-57 (363)
45 3a3j_A PBP5; penicillin bindin 88.1 0.64 2.2E-05 36.5 4.8 38 39-76 11-49 (344)
46 2xep_A ORF12; hydrolase; 1.50A 88.0 0.58 2E-05 38.1 4.6 49 29-77 136-187 (458)
47 3a3d_A PBP4, penicillin-bindin 88.0 1.2 4.2E-05 36.2 6.6 46 36-81 15-61 (453)
48 4hes_A Beta-lactamase class A- 87.6 1.1 3.8E-05 32.9 5.6 43 35-77 27-73 (275)
49 2iwb_A Methicillin resistance 87.4 0.77 2.6E-05 33.7 4.7 40 37-76 23-65 (246)
50 3hlc_A Transesterase, LOVD; al 87.2 0.93 3.2E-05 35.9 5.3 39 37-75 51-107 (432)
51 1ci9_A ESTB, protein (carboxyl 87.0 1 3.5E-05 34.6 5.3 22 54-75 66-87 (392)
52 2ffy_A Beta-lactamase; AMPC, d 86.9 0.95 3.2E-05 34.8 5.1 38 37-75 24-73 (358)
53 1zkj_A CMY-10, extended-spectr 86.7 1.1 3.9E-05 34.4 5.4 52 23-75 13-77 (359)
54 2drw_A DAA, D-amino acid amida 86.5 1.1 3.6E-05 34.4 5.1 39 37-75 20-72 (363)
55 3v39_A D-alanyl-D-alanine carb 86.4 0.29 9.9E-06 40.2 2.0 51 34-84 4-55 (418)
56 2wzx_A Beta-lactamase; inhibit 86.4 1.1 3.8E-05 34.7 5.2 38 37-75 27-76 (371)
57 1yqs_A D-alanyl-D-alanine carb 86.3 0.91 3.1E-05 34.6 4.6 39 37-75 23-74 (349)
58 2ex2_A Penicillin-binding prot 86.2 0.76 2.6E-05 37.5 4.4 44 37-80 16-60 (458)
59 1xp4_A D-alanyl-D-alanine carb 86.0 0.94 3.2E-05 36.1 4.7 39 39-77 16-55 (379)
60 2dcf_A 6-aminohexanoate-dimer 85.7 0.88 3E-05 35.8 4.4 36 39-75 84-124 (392)
61 2x02_A Beta-lactamase OXA-10; 85.7 1.1 3.7E-05 32.9 4.7 40 37-76 20-62 (248)
62 1xkz_A Regulatory protein BLAR 85.7 0.89 3E-05 33.5 4.2 40 37-76 30-72 (255)
63 2qz6_A Beta-lactamase; psychro 85.4 1.3 4.4E-05 34.0 5.1 37 38-75 24-72 (358)
64 3ita_A D-alanyl-D-alanine carb 84.9 1.2 4E-05 35.4 4.8 36 41-76 17-53 (352)
65 3hun_A Penicillin-binding prot 83.2 1.8 6E-05 35.9 5.3 39 39-77 73-111 (453)
66 3rju_A Beta-lactamase/D-alanin 82.9 1.8 6.3E-05 32.8 5.0 38 36-74 24-73 (351)
67 1nrf_A Regulatory protein BLAR 82.6 1.1 3.8E-05 33.3 3.6 39 38-76 35-76 (262)
68 1ei5_A D-aminopeptidase, DAP; 81.7 1.8 6.3E-05 35.1 4.8 37 38-75 25-74 (520)
69 3mfd_A D-alanyl-D-alanine carb 79.1 2.8 9.6E-05 33.2 5.0 37 40-76 13-49 (334)
70 4gb7_A 6-aminohexanoate-dimer 66.8 6.8 0.00023 30.6 4.4 33 42-74 114-151 (422)
71 3fwm_A Penicillin-binding prot 63.3 10 0.00034 33.0 5.1 40 37-76 418-470 (751)
72 3zyt_A Esterase A, ESTA; hydro 60.2 4.8 0.00017 30.9 2.4 35 39-74 30-70 (372)
73 3pbt_A Penicillin-binding prot 57.7 10 0.00035 31.4 4.1 43 34-76 202-266 (538)
74 2y2m_A PBP1B, penicillin-bindi 57.5 21 0.00073 29.1 5.9 41 37-78 124-178 (494)
75 3equ_A PBP-2, penicillin-bindi 56.3 16 0.00053 30.1 5.0 19 58-76 266-284 (542)
76 3isg_A Penicillinase, beta-lac 52.6 11 0.00039 28.1 3.3 32 46-78 26-60 (251)
77 3bux_B E3 ubiquitin-protein li 51.7 9.6 0.00033 30.6 2.9 31 22-52 265-295 (329)
78 3ue3_A Septum formation, penic 50.1 16 0.00054 30.3 4.1 43 34-76 229-294 (554)
79 3udf_A Penicillin-binding prot 50.0 26 0.00088 30.3 5.5 39 38-76 388-439 (731)
80 1qme_A Penicillin-binding prot 49.9 19 0.00066 30.2 4.6 20 57-76 283-302 (702)
81 3hbr_A OXA-48; class D beta-la 48.0 26 0.00087 26.4 4.6 38 39-76 43-83 (265)
82 3g4p_A Beta-lactamase OXA-24; 47.9 14 0.00049 27.4 3.2 32 45-76 30-63 (244)
83 2v2f_F Penicillin binding prot 43.4 14 0.00049 28.7 2.7 40 37-76 65-121 (390)
84 3op0_A Signal transduction pro 37.4 20 0.00069 28.7 2.7 32 22-53 250-282 (323)
85 3un7_A PBPA, penicillin-bindin 36.7 21 0.00071 28.6 2.7 20 57-76 187-206 (462)
86 1k38_A Penicillinase, beta-lac 28.6 63 0.0022 23.8 4.0 33 44-76 28-64 (254)
87 2jch_A Penicillin-binding prot 26.5 91 0.0031 26.6 5.1 41 37-78 350-404 (720)
88 2wad_A Penicillin-binding prot 26.3 34 0.0012 28.7 2.3 20 57-76 380-399 (680)
89 1vqq_A Saupbp2A, penicillin-bi 24.7 42 0.0014 28.2 2.6 20 57-76 375-394 (646)
90 3vsk_A Penicillin-binding prot 23.4 39 0.0013 28.0 2.2 20 57-76 341-360 (646)
91 1wxa_A Afadin, AF-6 protein; R 20.5 65 0.0022 21.4 2.5 37 31-67 50-96 (116)
No 1
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiat midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Probab=100.00 E-value=3e-41 Score=269.73 Aligned_cols=92 Identities=36% Similarity=0.550 Sum_probs=87.4
Q ss_pred cccccccCCCCccCCcchhhhccCCCCeEEEEEecCCcEEeecCCCcccchhhhhHHHHHHHHHhhcChHHHHHhhCCCC
Q psy8039 11 KFSNKVQLFLRQVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHKYVGQEP 90 (105)
Q Consensus 11 ~~~~~~~~~~G~vA~YIP~La~~dp~~fgiai~tvdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~V~~~VG~EP 90 (105)
.+++.+...+|+||+|||+||++||++|||||||+||++|++||++++||||||||||+|++||+++|.|+||+|||+||
T Consensus 14 ~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~GD~~~~FsiQSISK~f~l~lAl~~~G~e~V~~~VG~EP 93 (310)
T 1u60_A 14 AYTQFHSLNGGQNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQAVQDKIGADP 93 (310)
T ss_dssp HHHHHTTCCCCBCCCSSHHHHTSCTTCCEEEEEETTSCEEEEESTTCCEECGGGHHHHHHHHHHHHHCHHHHHHHTCSCC
T ss_pred HHHhcccCCCCccccccHHhhcCChhHeEEEEEeCCCCEEecCCCCCceehHHHHHHHHHHHHHHHHCHHHHHHHhCCCC
Confidence 35566677789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceee-ecc
Q psy8039 91 SGRNFNELI-LDH 102 (105)
Q Consensus 91 SG~~FNSi~-le~ 102 (105)
||+|||||+ ||.
T Consensus 94 SG~~FNSi~~Le~ 106 (310)
T 1u60_A 94 TGLPFNSVIALEL 106 (310)
T ss_dssp CSSCTTCHHHHHH
T ss_pred CCCCCcchhhhhc
Confidence 999999998 884
No 2
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative, riken structural genomics/proteomics initiative, RSGI; 2.07A {Geobacillus kaustophilus}
Probab=100.00 E-value=5.4e-41 Score=268.06 Aligned_cols=97 Identities=30% Similarity=0.424 Sum_probs=76.2
Q ss_pred hhhhhcccccccCCCCccCCcchhhhccCCCCeEEEEEecCCcEEeecCCCcccchhhhhHHHHHHHHHhhcChHHHHHh
Q psy8039 6 CVQSSKFSNKVQLFLRQVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHKY 85 (105)
Q Consensus 6 ~~~~~~~~~~~~~~~G~vA~YIP~La~~dp~~fgiai~tvdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~V~~~ 85 (105)
.+|...=+......+|+||+|||+||++||++|||||||+||++|++||++++||||||||||+|++||+++|.|+||+|
T Consensus 8 ~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiai~t~dG~~~~~GD~~~~FsiQSISKvf~l~lAl~~~G~e~V~~~ 87 (308)
T 2pby_A 8 ELVRFVEEAKQYARYGKVADYIPALGKANPNELSIAIYTPDDEVVSAGDVTVKVTLQSISKIIALALVLIDRGEDEVFHK 87 (308)
T ss_dssp HHHHHHHHHHTTGGGCBCCCSSGGGGGSCTTCCEEEEEETTTEEEEEESTTCCEECTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcccchHhhcCChhHeeEEEEeCCCCEEeccCCCCceehHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 34444223333456699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCceee-ecc
Q psy8039 86 VGQEPSGRNFNELI-LDH 102 (105)
Q Consensus 86 VG~EPSG~~FNSi~-le~ 102 (105)
||+||||+|||||+ ||.
T Consensus 88 VG~EPSG~~FNsi~~Le~ 105 (308)
T 2pby_A 88 VGMEPTDYPFHSIAKLEE 105 (308)
T ss_dssp BCSCC-------------
T ss_pred hCCCCCCCCCcchhhhhc
Confidence 99999999999998 884
No 3
>3voy_A Glutaminase kidney isoform, mitochondrial; hydrolase; 2.20A {Homo sapiens} PDB: 3czd_A 3voz_A* 3vp0_A* 3vp1_A* 3vp2_A 3vp3_A 3vp4_A
Probab=100.00 E-value=6.9e-41 Score=268.12 Aligned_cols=93 Identities=56% Similarity=0.982 Sum_probs=86.2
Q ss_pred ccccccCCCCccCCcchhhhccCCCCeEEEEEecCCcEEeecCCCcccchhhhhHHHHHHHHHhhcChHHHHHhhCCCCC
Q psy8039 12 FSNKVQLFLRQVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHKYVGQEPS 91 (105)
Q Consensus 12 ~~~~~~~~~G~vA~YIP~La~~dp~~fgiai~tvdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~V~~~VG~EPS 91 (105)
+++.+...+|+||+|||+||++||++|||||||+||++|++||++++||||||||||+|++||+++|.|+||+|||+|||
T Consensus 17 ~~~~~~~~~G~vA~YIP~La~vdp~~fgiav~t~dG~~~~~GD~~~~FsiQSISKvf~l~lAl~~~G~e~V~~~VG~EPS 96 (315)
T 3voy_A 17 YESAKKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLGTEYVHRYVGKEPS 96 (315)
T ss_dssp HHHHHTCCCSEECCSSHHHHTSCTTCCEEEEEETTCCEEEEESTTSCEECGGGHHHHHHHHHHHHHHHHHHTTTSCSSCC
T ss_pred HHHhhhccCCCcccccHHHhcCCccceEEEEEecCCCEEEecCCCCccchHHHHHHHHHHHHHHhhCHHHHHHHcCCCCC
Confidence 34445556799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeccCC
Q psy8039 92 GRNFNELILDHNS 104 (105)
Q Consensus 92 G~~FNSi~le~~~ 104 (105)
|+|||||.+++.|
T Consensus 97 G~~FNsi~~~e~g 109 (315)
T 3voy_A 97 GLRFNKLFLNEDD 109 (315)
T ss_dssp SSSTTCCCCCTTS
T ss_pred CCCCcccccccCC
Confidence 9999999965544
No 4
>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* 3agf_A
Probab=100.00 E-value=2.7e-40 Score=265.97 Aligned_cols=98 Identities=30% Similarity=0.363 Sum_probs=78.9
Q ss_pred hhhhhcccccccCCCCccCCcchhhhccCCCCeEEEEEecCCcEEeecCCCcccchhhhhHHHHHHHHHhhcChHHHHHh
Q psy8039 6 CVQSSKFSNKVQLFLRQVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHKY 85 (105)
Q Consensus 6 ~~~~~~~~~~~~~~~G~vA~YIP~La~~dp~~fgiai~tvdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~V~~~ 85 (105)
.+|...=+.......|+||+|||+||++||++|||||||+||++|++||++++||||||||||+|++||+++|.|+||+|
T Consensus 20 ~l~~~~~~~~~~~~~G~vA~YIP~La~vdp~~fgiav~t~dG~~~~~GD~~~~FsiQSISKvf~l~lAl~~~G~e~V~~r 99 (330)
T 1mki_A 20 QLHDWVEYYRPFAANGQSANYIPALGKVNDSQLGICVLEPDGTMIHAGDWNVSFTMQSISKVISFIAACMSRGIPYVLDR 99 (330)
T ss_dssp HHHHHHHHHGGGGGGCBCCC---------TTCCEEEEECTTSCEEEEESTTCCEECGGGHHHHHHHHHHHHHCHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCcchhhHhhccCCcceEEEEEeCCCCEEeccCCCCceehHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 34444333333456699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCceee-eccC
Q psy8039 86 VGQEPSGRNFNELI-LDHN 103 (105)
Q Consensus 86 VG~EPSG~~FNSi~-le~~ 103 (105)
||+||||+|||||+ ||.+
T Consensus 100 VG~EPSG~~FNSi~~Le~~ 118 (330)
T 1mki_A 100 VDVEPTGDAFNSIIRLEIN 118 (330)
T ss_dssp CCCCCCSSCTTCCHHHHHS
T ss_pred hCCCCCCCCccchhhhccc
Confidence 99999999999997 8864
No 5
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=100.00 E-value=8.7e-40 Score=271.34 Aligned_cols=98 Identities=39% Similarity=0.588 Sum_probs=90.6
Q ss_pred hhhhhhcccccccCCCCccCCcchhhhccCCCCeEEEEEecCCcEEeecCCCcccchhhhhHHHHHHHHHhhcChHHHHH
Q psy8039 5 QCVQSSKFSNKVQLFLRQVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHK 84 (105)
Q Consensus 5 ~~~~~~~~~~~~~~~~G~vA~YIP~La~~dp~~fgiai~tvdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~V~~ 84 (105)
+.+|.. +++.+...+|+||+|||+||++||++|||||||+||++|++||++++||||||||||+|++||+++|.|+||+
T Consensus 7 ~~L~~i-~~~~~~~~~GkvAdYIP~LA~vdp~~fGIai~tvDG~~~~~GD~~~~FsIQSISKvf~l~lAL~~~G~e~V~~ 85 (456)
T 3agd_A 7 DYLASL-VTELGAVNPGETAQYIPVLAEADPDRFGIALATPTGRLHCAGDADVEFTIQSASKPFTYAAALVDRGFAAVDR 85 (456)
T ss_dssp HHHHHH-HHHHTTCCCSBCCTTSHHHHTSCSCCCEEEEECTTSCEEEEESTTCCEECGGGGHHHHHHHHHHHHCHHHHHT
T ss_pred HHHHHH-HHHhhhcCCCcCcchhHHhhcCChhHeEEEEEeCCCCEEeccCCCCceehHHhHHHHHHHHHHHHHCHHHHHH
Confidence 345555 5556668889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCCceeeeccC
Q psy8039 85 YVGQEPSGRNFNELILDHN 103 (105)
Q Consensus 85 ~VG~EPSG~~FNSi~le~~ 103 (105)
|||+||||+|||||.||.+
T Consensus 86 rVG~EPSG~~FNSi~LE~~ 104 (456)
T 3agd_A 86 QVGLNPSGEAFNELSLEAE 104 (456)
T ss_dssp TSCCCCCCSCCCGGGTSSS
T ss_pred HhCCCCCCCCCCceeeccC
Confidence 9999999999999988863
No 6
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Probab=100.00 E-value=1.2e-38 Score=268.04 Aligned_cols=99 Identities=53% Similarity=0.926 Sum_probs=88.5
Q ss_pred hhhhhhcccccccCCCCccCCcchhhhccCCCCeEEEEEecCCcEEeecCCCcccchhhhhHHHHHHHHHhhcChHHHHH
Q psy8039 5 QCVQSSKFSNKVQLFLRQVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHK 84 (105)
Q Consensus 5 ~~~~~~~~~~~~~~~~G~vA~YIP~La~~dp~~fgiai~tvdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~V~~ 84 (105)
+.++.. +++.+...+|+||+|||+||++||++|||||||+||++|++||++++||||||||||+|++||+++|.|+||+
T Consensus 159 ~~L~~i-~~~~~~~~~GkVAdYIPeLAkvdP~~fGIav~tvDG~~~s~GD~~~~FsIQSISKvftlalAL~~~G~e~V~~ 237 (534)
T 3uo9_A 159 SHIDEL-YESAKKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLGTEYVHR 237 (534)
T ss_dssp HHHHHH-HHHHHHCCCCBCCCSSHHHHTSCTTCCEEEEEETTCCEEEEESCSSCEECGGGGHHHHHHHHHHHHCHHHHTT
T ss_pred HHHHHH-HHHhccccCCCcccccHHhhcCCccceEEEEEecCCCEEEecCCCCceehHHHHHHHHHHHHHHHHCHHHHHH
Confidence 344443 3444555579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCCceeeeccCC
Q psy8039 85 YVGQEPSGRNFNELILDHNS 104 (105)
Q Consensus 85 ~VG~EPSG~~FNSi~le~~~ 104 (105)
|||+||||+|||||+++..|
T Consensus 238 rVG~EPSG~pFNSi~l~e~G 257 (534)
T 3uo9_A 238 YVGKEPSGLRFNKLFLNEDD 257 (534)
T ss_dssp TSCCSCCCGGGTTCSSCTTS
T ss_pred HhCCCCCCCCCcchhhccCC
Confidence 99999999999999965544
No 7
>3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 2.20A {Mycobacterium bovis}
Probab=96.63 E-value=0.0038 Score=47.31 Aligned_cols=49 Identities=22% Similarity=0.150 Sum_probs=40.3
Q ss_pred chhhhccCCCCeEEEEEecCCcEEeecCCCcccchhhhhHHHHHHHHHh
Q psy8039 27 IPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 27 IP~La~~dp~~fgiai~tvdG~~~~~GD~~~~FsiQSisK~f~~~lAL~ 75 (105)
+..+++.+-...+++|+..++.+++.||.++.|.|.|++|+|+-++++.
T Consensus 4 l~~~~~~~vpg~s~~vv~~~~~v~~~g~~~t~~~i~S~tK~~ta~~i~~ 52 (280)
T 3i7j_A 4 LEVLGGWPVPAAAAAVIGPAGVLATHGDTARVFALASVTKPLVARAAQV 52 (280)
T ss_dssp GGGGGGSSSSCEEEEEEETTEEEEEESCTTSCEECGGGHHHHHHHHHHH
T ss_pred HHHHHhCCCCcEEEEEEECCEEEEeecCCCCeEechhhHHHHHHHHHHH
Confidence 3455556666789999998888899999999999999999999665543
No 8
>3lez_A Beta-lactamase; antibiotic resistance, halotolerant, DEEP- SEA bacterium, hydrolase; HET: EPE; 1.25A {Oceanobacillus iheyensis} SCOP: e.3.1.1
Probab=96.18 E-value=0.0067 Score=45.60 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=49.1
Q ss_pred chhhhccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhcChHHHHHhhCCCC
Q psy8039 27 IPQLARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHKYVGQEP 90 (105)
Q Consensus 27 IP~La~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~V~~~VG~EP 90 (105)
|-+|.+-.+..+||++.+. +|++++. +.+.+|+..|+.|+++.+.+|+......+-++|-+.+
T Consensus 5 l~~~~~~~~g~~gv~v~d~~tg~~~~~-n~d~~~~~AS~~Kl~~~~~~l~~~~~g~ld~~v~~~~ 68 (260)
T 3lez_A 5 LKKLEEEFDVRLGVYAIDTGADKEISY-RENERFAYTSTFKPLAVGAVLQTKSDEELEETITYSE 68 (260)
T ss_dssp HHHHHHHHTCEEEEEEEETTTTEEEEE-STTSEEECGGGGHHHHHHHHHHHCCHHHHHSEECCCG
T ss_pred HHHHHHhcCCeEEEEEEECCCCCEEEE-CCCCcccchHHHHHHHHHHHHHhccCCCCCceEEecH
Confidence 3455566788999999986 5677744 7899999999999999999999876555666665554
No 9
>4ewf_A Beta-lactamase; ABA-sandwich, structural genomics, midwest center for struct genomics (MCSG), PSI-biology, cytoplasmic, hydrolase; 2.00A {Sphaerobacter thermophilus}
Probab=96.15 E-value=0.008 Score=44.80 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=39.2
Q ss_pred hccCCCCeEEEEEecCCcEEeecCCCcccchhhhhHHHHHHHHHhh
Q psy8039 31 ARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 31 a~~dp~~fgiai~tvdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~ 76 (105)
++......||++.+..|++|+. +.+.+|+..|+.|+++.+.+|+.
T Consensus 21 ~~~~~g~~gv~v~~~~G~~~~~-n~d~~~~~AS~~Kl~~~~~~l~~ 65 (275)
T 4ewf_A 21 AEATGGTVGATIVAPGGETFRH-NGDRRFRAASTVKIPLMIAVYRA 65 (275)
T ss_dssp HHTTSCEEEEEEECTTSCEEEE-STTCCEECGGGGHHHHHHHHHHH
T ss_pred hhccCceEEEEEEeCCCCEEEE-CCCCeEccHHHHHHHHHHHHHHH
Confidence 4456788999999988899887 57899999999999999999985
No 10
>3qhy_A Beta-lactamase; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Bacillus anthracis}
Probab=95.92 E-value=0.0047 Score=46.84 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=49.4
Q ss_pred ccCCcchhhhccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhcChHHHHHhhCC
Q psy8039 22 QVADYIPQLARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHKYVGQ 88 (105)
Q Consensus 22 ~vA~YIP~La~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~V~~~VG~ 88 (105)
++..-|-+|.+.-+..+|+++.+. .|++++ =+.+.+|+..|+.|+++.+.+|+......+-++|-+
T Consensus 13 ~l~~~l~~l~~~~~~~~gv~v~d~~tg~~l~-~n~d~~~~~AS~~Kl~~~~~~l~~~~~g~ld~~v~v 79 (271)
T 3qhy_A 13 ATHKEFSQLEKKFDARLGVYAIDTGTNQTIA-YRPNERFAFASTYKALAAGVLLQQNSTKKLDEVITY 79 (271)
T ss_dssp -CHHHHHHHHHHHTCEEEEEEEETTTCCEEE-ESTTCCEECGGGHHHHHHHHHHHHSCGGGGGSEECC
T ss_pred HHHHHHHHHHHhcCCeEEEEEEECCCCCEEE-ECCCCcccchHHHHHHHHHHHHHHhhCCCCCCeEEe
Confidence 344456667777788999999986 677884 478999999999999999999998654334444433
No 11
>3ny4_A Beta-lactamase, penicillinase; penicillin binding protein, beta-lactam complex, hydrolase-A complex; HET: SMX; 1.22A {Mycobacterium tuberculosis} PDB: 3m6b_A* 3dwz_A* 3iqa_A* 3cg5_A* 3m6h_A* 4df6_A* 2gdn_A 3vfh_A* 3vff_A* 3n8l_A* 3n6i_A* 3n7w_A* 3n8r_A* 3n8s_A* 3nbl_A* 3nc8_A* 3nck_A* 3nde_A* 3ndg_A*
Probab=95.17 E-value=0.0098 Score=44.77 Aligned_cols=62 Identities=16% Similarity=0.098 Sum_probs=46.3
Q ss_pred chhhhccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhcChHHHHHhhCCC
Q psy8039 27 IPQLARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHKYVGQE 89 (105)
Q Consensus 27 IP~La~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~V~~~VG~E 89 (105)
|-+|.+--+..+||++.+. +|++++ =+.+.+|+..|+.|+++++.+|+......+-++|-+.
T Consensus 6 i~~~~~~~~~~~gv~v~d~~tg~~~~-~n~d~~~~~AS~~Kl~~~~~~l~~~~~~~ld~~v~~~ 68 (265)
T 3ny4_A 6 FAELERRYDARLGVYVPATGTTAAIE-YRADERFAFCSTFAAPLVAAVLHQNPLTHLDKLITYT 68 (265)
T ss_dssp HHHHHHHHTCEEEEEECCCSSSCCEE-ESTTSCEECGGGGHHHHHHHHHHHSCGGGGGCEECCC
T ss_pred HHHHHHhcCCEEEEEEEECCCCCEEE-ECCCCceechHHHHHHHHHHHHHHhhcCCCCceEEec
Confidence 4455556678999999975 567774 4688999999999999999999986443344444433
No 12
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A
Probab=94.99 E-value=0.018 Score=47.83 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=49.3
Q ss_pred cchhhhccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhh--cChHHHHHhhCCCCC
Q psy8039 26 YIPQLARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEE--LDQEEVHKYVGQEPS 91 (105)
Q Consensus 26 YIP~La~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~--~G~e~V~~~VG~EPS 91 (105)
-|.+|.+--...+||++.+. .|+++..=..+.+|++.|+.|+++.+.+|++ .|...+-++|-+.+.
T Consensus 388 ~~~~~e~~~~~~~gv~~~d~~tg~~~~~~~~d~~fp~aS~~K~~~~~~~l~~~~~g~~~l~~~v~~~~~ 456 (637)
T 4dxb_A 388 KVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQN 456 (637)
T ss_dssp HHHHHHHHHTSCEEEEEEETTTCCEEEEESTTSCEECGGGGHHHHHHHHHHHHHTTSCCTTCEECCCGG
T ss_pred HHHHHHHHcCCeEEEEEEECCCCCEeeeECCCCeeccHHHHHHHHHHHHHHHHhcCCCCCCceEEecHH
Confidence 46667777788999999986 5887744345789999999999999999986 454445555555444
No 13
>1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, beta-lactam hydrolysis, benzylpenicillin, cephaloridine; HET: PNM; 1.76A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1ghi_A* 1ghm_A* 1kgf_A 1kge_A 1ome_A 1kgg_A 1dja_A 3blm_A 1blh_A* 1blc_A 1djc_A 1djb_A 1blp_A 1pio_A
Probab=94.97 E-value=0.033 Score=40.50 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=40.3
Q ss_pred hhhhccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhcC
Q psy8039 28 PQLARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEELD 78 (105)
Q Consensus 28 P~La~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G 78 (105)
-++.+.-+..+|+++.+. +|++++. +.+.+|+..|+.|+++.+.+|+...
T Consensus 5 ~~~~~~~~~~~~~~v~d~~tg~~~~~-~~~~~~~~aS~~K~~~a~~~l~~~~ 55 (258)
T 1ghp_A 5 NDLEKKYNAHIGVYALDTKSGKEVKF-NSDKRFAYASTSKAINSAILLEQVP 55 (258)
T ss_dssp HHHHHHTTCEEEEEEEETTTCCEEEE-STTSCEECGGGHHHHHHHHHHHHSC
T ss_pred HHHHHhcCCcEEEEEEECCCCCEEEE-CCCCcccchHHHHHHHHHHHHHHhc
Confidence 344555678899999986 5677754 6789999999999999999999864
No 14
>4euz_A Carbapenem-hydrolizing beta-lactamase SFC-1; carbapenemase, hydrolase, antibiotic resistance, beta-lactam complex; HET: HAR MEM; 1.08A {Serratia fonticola} PDB: 4eqi_A 4ev4_A*
Probab=94.82 E-value=0.023 Score=43.31 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=46.6
Q ss_pred chhhhccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhc--ChHHHHHhhCCCC
Q psy8039 27 IPQLARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEEL--DQEEVHKYVGQEP 90 (105)
Q Consensus 27 IP~La~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~--G~e~V~~~VG~EP 90 (105)
|-+|.+--+..+||++.+. .|+++ .=+.+.+|++.|+.|+++.+.+|+.. |.-.+-++|-+.+
T Consensus 12 l~~l~~~~~g~~gv~v~d~~tG~~l-~~n~d~~~~~AS~~Kl~~~~~vl~~v~~G~l~ld~~v~v~~ 77 (283)
T 4euz_A 12 LKRLENDFGGRIGVYAIDTGSNKTF-GYRANERFPLCASFKGFLAAAVLSKSQQQEGLLNQRIRYDN 77 (283)
T ss_dssp HHHHHHHHTSEEEEEEEETTTCCEE-EESTTSCEECGGGHHHHHHHHHHHHHHHSTTGGGCEECCTT
T ss_pred HHHHHHhcCCeEEEEEEECCCCCEE-EECCCCeEEcHHHHHHHHHHHHHHHhhCCCCCCCcEEEecH
Confidence 4455556688999999985 56777 44789999999999999999999864 4334445554443
No 15
>1n9b_A Penicillinase, beta-lactamase SHV-2; beta-lactam hydrolase, detergent binding, drug design, radiation damage; HET: MA4 EPE; 0.90A {Klebsiella pneumoniae} SCOP: e.3.1.1 PDB: 3d4f_A* 2zd8_A* 1q2p_A* 1shv_A* 1vm1_A* 2g2u_A 2h5s_A* 1ong_A* 3c4o_A 3c4p_A 3mke_A* 3mkf_A* 3mxr_A* 3mxs_A* 3n4i_A 2a3u_A* 3opr_A* 3opl_A* 3oph_A* 3opp_A* ...
Probab=94.80 E-value=0.022 Score=41.50 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=37.9
Q ss_pred hhccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 30 LARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 30 La~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
+.+-.+...|+.+.+. +|+++..=+.+.+|++.|+.|+|+.+.+|+..
T Consensus 11 ~~~~~~~~~~v~v~d~~tg~~l~~~~~~~~~~~aS~~K~~~a~~~l~~~ 59 (265)
T 1n9b_A 11 SESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARV 59 (265)
T ss_dssp HHHHHTSEEEEEEEETTTCCEEEEESTTSCEECGGGHHHHHHHHHHHHH
T ss_pred HHHhcCCcEEEEEEECCCCcEeeeeCCCCeeecHHHHHHHHHHHHHHHH
Confidence 3334456789999985 57887334678999999999999999999873
No 16
>3cjm_A Putative beta-lactamase; NP_815223.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; HET: MSE; 1.50A {Enterococcus faecalis}
Probab=94.45 E-value=0.049 Score=41.32 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=41.3
Q ss_pred CcchhhhccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhh
Q psy8039 25 DYIPQLARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 25 ~YIP~La~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~ 76 (105)
.-|-++.+..+..+|+++.+. .|++++ =+.+.+|+..|+.|+++.+.+|+.
T Consensus 39 ~~l~~~~~~~~~~~gv~v~D~~tG~~~~-~n~d~~~~~AS~~Kl~~a~~~l~~ 90 (282)
T 3cjm_A 39 DLLVASVKEFEGTVGISYLDLETGEQRS-VNGQHEFYTASTIKVPLTMLVADT 90 (282)
T ss_dssp HHHHHHHHHCSSEEEEEEEETTTCCEEE-ESTTCCEECGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCEEE-ECCCCeeccHHHHHHHHHHHHHHH
Confidence 344455566788899999986 577774 468899999999999999999986
No 17
>1m40_A TEM-1, beta-lactamase TEM; acylation mechanism, ultra- high resolution, hydrolase; HET: CB4; 0.85A {Escherichia coli} SCOP: e.3.1.1 PDB: 1jwp_A* 1nxy_A* 1ny0_A* 1nym_A* 1nyy_A* 1pzo_A* 1erm_A* 1ero_A* 1erq_A* 1s0w_A 1xpb_A 1li0_A 1htz_A 1jtd_A 1esu_A 1jwz_A* 1li9_A 1jwv_A* 1jtg_A 1axb_A* ...
Probab=94.30 E-value=0.05 Score=39.41 Aligned_cols=47 Identities=15% Similarity=0.059 Sum_probs=37.2
Q ss_pred hccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 31 ARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 31 a~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
.+..+...|+.+.+. +|+++..=+.+.+|++-|+.|+++.+.+|+..
T Consensus 12 ~~~~~~~~~~~v~d~~tG~~l~~~~~~~~~~~aS~~K~~ta~~~l~~~ 59 (263)
T 1m40_A 12 EDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRV 59 (263)
T ss_dssp HHHHTSEEEEEEEETTTCCEEEEESTTSCEECGGGHHHHHHHHHHHHH
T ss_pred HHhcCCeEEEEEEECCCCCEeeeeCCCCccccHHHHHHHHHHHHHHHH
Confidence 333456788888885 67887444678999999999999999999863
No 18
>1hzo_A Beta-lactamase; mixed alpha/beta, cephalosporinase, hydrolase; HET: MES; 1.75A {Proteus vulgaris} SCOP: e.3.1.1
Probab=94.24 E-value=0.053 Score=39.64 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=36.3
Q ss_pred ccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 32 RADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 32 ~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
+..+..+|+++.+. +|++++. +.+.+|++-|+.|+|+.+.+|+..
T Consensus 15 ~~~~~~~~v~v~d~~tg~~~~~-n~~~~~~~aS~~K~~ta~~~l~~v 60 (271)
T 1hzo_A 15 KYSQGRLGVALINTEDNSQITY-RGEERFAMASTSKVMAVAAVLKAS 60 (271)
T ss_dssp HHHTSEEEEEEEETTTTEEEEE-STTSCEECGGGGHHHHHHHHHHHH
T ss_pred HhcCCcEEEEEEECCCCCEEEE-CCCCcchhHHHHHHHHHHHHHHHH
Confidence 33456789988885 5777744 678999999999999999999864
No 19
>1g6a_A Beta-lactamase PSE-4; class A beta-lactamase, carbenicillinase, R234K mutant, hydrolase; 1.75A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1g68_A
Probab=94.12 E-value=0.081 Score=38.35 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=37.0
Q ss_pred hhccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 30 LARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 30 La~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
+.+-.+...|+.+.+. +|++++. +.+.+|++-|+.|+|+.+.+|+..
T Consensus 15 ~~~~~~~~~~~~v~d~~tg~~~~~-~~~~~~~~aS~~K~~~a~~~l~~~ 62 (271)
T 1g6a_A 15 IEVSLSARIGVSVLDTQNGEYWDY-NGNQRFPLTSTFKTIACAKLLYDA 62 (271)
T ss_dssp HHHHTTCEEEEEEEETTTTEEEEE-STTSCEECGGGGHHHHHHHHHHHH
T ss_pred HHHhcCCeEEEEEEECCCCCEEEE-CCCCccccHHHHHHHHHHHHHHHH
Confidence 3333456789989885 5777754 678999999999999999999863
No 20
>2cc1_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, broad-spectrum; 2.13A {Mycobacterium fortuitum} SCOP: e.3.1.1
Probab=94.04 E-value=0.043 Score=39.44 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=34.1
Q ss_pred CCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhh
Q psy8039 34 DPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 34 dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~ 76 (105)
.+...|+++.+. +|+++.. +.+.+|++-|++|+|+.+.+|+.
T Consensus 14 ~~~~~~~~v~d~~tg~~~~~-~~~~~~~~aS~~K~~ta~~~l~~ 56 (262)
T 2cc1_A 14 DNVLIGLYAANLQSGRRITH-RPDEMFAMCSTFKGYVAARVLQM 56 (262)
T ss_dssp HTEEEEEEEEETTTCCEEEE-STTSCEECGGGHHHHHHHHHHHH
T ss_pred cCCeEEEEEEECCCCCeeee-cCCCeeeehHHHHHHHHHHHHHH
Confidence 345788888885 5677754 57899999999999999999974
No 21
>3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli}
Probab=93.93 E-value=0.052 Score=41.56 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=42.6
Q ss_pred CcchhhhccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhh
Q psy8039 25 DYIPQLARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 25 ~YIP~La~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~ 76 (105)
.-|-+|.+-.+..+|+++.+. .|++++ =+.+.+|++.|+.|+++.+.+|+.
T Consensus 31 ~~l~~l~~~~~g~~gv~v~d~~tG~~l~-~n~d~~~~~AS~~Kl~~a~~~l~~ 82 (294)
T 3dw0_A 31 EPFAKLEQDFGGSIGVYAMDTGSGATVS-YRAEERFPLCSSFKGFLAAAVLAR 82 (294)
T ss_dssp HHHHHHHHHHTSEEEEEEEETTTCCEEE-ESTTSCEECGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCEEE-ECCCCcccchHHHHHHHHHHHHHH
Confidence 456667777788999999985 567774 478999999999999999999985
No 22
>2wk0_A Beta-lactamase; hydrolase, iodopenicillanate, antibiotic resistance; HET: BIY CIT; 1.65A {Bacillus licheniformis} PDB: 2x71_A* 3b3x_A* 1i2s_A* 1i2w_A* 2y91_A* 2blm_A 4blm_A 3sh9_A* 3sh7_A* 3sh8_A* 3ly3_A 3kgo_A* 3ly4_A* 3kgm_A* 3kgn_A* 3m2j_A* 3m2k_A* 3soi_A* 1mbl_A
Probab=93.84 E-value=0.063 Score=39.03 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=40.5
Q ss_pred ccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhcChHHHHHhhCC
Q psy8039 32 RADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHKYVGQ 88 (105)
Q Consensus 32 ~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~V~~~VG~ 88 (105)
+.-+...|+++.+. +|++++. +.+.+|++.|+.|+|+.+.+|+......+-++|-.
T Consensus 13 ~~~~~~~~v~v~d~~tg~~~~~-~~~~~~~~aS~~K~~~a~~~l~~~~~g~l~~~v~~ 69 (265)
T 2wk0_A 13 EQFDAKLGIFALDTGTNRTVTY-RPDERFAFASTIKALTVGVLLQQKSIEDLNQRITY 69 (265)
T ss_dssp HHHTCEEEEEEEETTTCCEEEE-STTCEEECGGGHHHHHHHHHHHHCCTGGGGCEECC
T ss_pred HhcCCeEEEEEEECCCCCEEEE-CCCCceecHHHHHHHHHHHHHHHHhCCCCCCeEEe
Confidence 33445789988885 5777744 78899999999999999999986422134444443
No 23
>1bsg_A Beta lactamase, penicillinase; hydrolase, antibiotic resistance; 1.85A {Streptomyces albus} SCOP: e.3.1.1
Probab=93.82 E-value=0.063 Score=38.63 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=36.0
Q ss_pred cCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 33 ADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 33 ~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
..+...|+++.+. +|+++.. +.+.+|++-|++|+|+.+.+|+..
T Consensus 13 ~~~~~~~v~v~d~~tg~~~~~-~~~~~~~~aS~~K~~~a~~~l~~~ 57 (266)
T 1bsg_A 13 ASGARLGVYAYDTGSGRTVAY-RADELFPMCSVFKTLSSAAVLRDL 57 (266)
T ss_dssp HHTSEEEEEEEETTTCCEEEE-STTSCEECGGGGHHHHHHHHHHHT
T ss_pred hCCCeEEEEEEECCCCCEEEE-CCCCceecHHHHHHHHHHHHHHHH
Confidence 3456789988885 5777754 678999999999999999999874
No 24
>3p09_A Beta-lactamase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich, cytosol; HET: MSE; 1.90A {Francisella tularensis subsp}
Probab=93.76 E-value=0.035 Score=42.45 Aligned_cols=54 Identities=19% Similarity=0.093 Sum_probs=41.8
Q ss_pred cCCcchhhhccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 23 VADYIPQLARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 23 vA~YIP~La~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
+..-|-++.+-.+..+|+++.+. .|++++ =+.+.+|++.|+.|+++.+.+|+..
T Consensus 24 l~~~i~~~~~~~~~~~gv~v~d~~tG~~l~-~n~d~~~~~AS~~Kl~~~~~vl~~v 78 (290)
T 3p09_A 24 LDDSFKNLENKYDGKIGIYTLNTDDKTNIK-YNESYHFPICSVFKFLLVGAILDYD 78 (290)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECC----CCE-ESTTSCEECGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEEEECCCCCEEE-ECCCCeEecHHHHHHHHHHHHHHHh
Confidence 44456667777789999999976 467774 4688999999999999999999863
No 25
>3c5a_A Class A carbapenemase KPC-2; beta-lactamase, C-terminal deleted mutant, plasmid, hydrolase; HET: CIT; 1.23A {Escherichia coli} PDB: 3rxw_A* 3rxx_A* 2ods_A 2ov5_A* 3e2k_A 3e2l_A*
Probab=93.67 E-value=0.067 Score=38.55 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=35.6
Q ss_pred ccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhh
Q psy8039 32 RADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 32 ~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~ 76 (105)
+..+...|+.+.+. +|+++.. +.+.+|++-|+.|+|+.+.+|+.
T Consensus 13 ~~~~~~~~v~v~d~~tg~~~~~-~~~~~~~~aS~~K~~~a~~~l~~ 57 (264)
T 3c5a_A 13 QDFGGSIGVYAMDTGSGATVSY-RAEERFPLCSSFKGFLAAAVLAR 57 (264)
T ss_dssp HHHTSEEEEEEEETTTCCEEEE-STTSCEECGGGHHHHHHHHHHHH
T ss_pred HhCCCeEEEEEEECCCCCEEEE-CCCCceecHHHHHHHHHHHHHHH
Confidence 33456789988885 6777754 57899999999999999999986
No 26
>2p74_A Beta-lactamase CTX-M-9A; ultra-high resolution, acylation, ESBL, hydrolase; HET: PO4; 0.88A {Escherichia coli} PDB: 3g2y_A* 4dds_A* 4ddy_A* 4de0_A* 4de1_A* 4de2_A* 4de3_A* 1ylj_A* 1yly_A* 1ym1_A* 1yms_A* 1ymx_A* 3g2z_A* 3g30_A* 3g31_A* 3g32_A* 3g34_A* 3g35_A* 1ylt_A* 1ylz_A* ...
Probab=93.59 E-value=0.085 Score=37.97 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=35.7
Q ss_pred CCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 34 DPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 34 dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
.+...|+.+.+. +|+++.. +.+.+|++-|+.|+|+.+.+|+..
T Consensus 16 ~~~~~~~~v~d~~tG~~l~~-~~~~~~~~aS~~K~~ta~~~l~~~ 59 (263)
T 2p74_A 16 SGGRLGVALIDTADNTQVLY-RGDERFPMCSTSKVMAAAAVLKQS 59 (263)
T ss_dssp HTSEEEEEEEETTTTEEEEE-STTSCEECGGGGHHHHHHHHHHHH
T ss_pred cCCcEEEEEEECCCCCeEee-CCCCccccHHHHHHHHHHHHHHHH
Confidence 356788888885 5788755 678999999999999999999874
No 27
>1bue_A Protein (imipenem-hydrolysing beta-lactamase); hydrolase, antibiotic resistance, class A carbapenemase; 1.64A {Enterobacter cloacae} SCOP: e.3.1.1 PDB: 1bul_A* 1dy6_A
Probab=93.47 E-value=0.078 Score=38.51 Aligned_cols=44 Identities=23% Similarity=0.198 Sum_probs=35.7
Q ss_pred cCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 33 ADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 33 ~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
.-+...|+++.+. +|+++.. +.+.+|++-|+.|+|+.+.+|+..
T Consensus 14 ~~~~~~~v~v~d~~tg~~~~~-~~~~~~~~aS~~K~~~a~~~l~~~ 58 (265)
T 1bue_A 14 DFNGRIGVYALDTGSGKSFSY-RANERFPLCSSFKGFLAAAVLKGS 58 (265)
T ss_dssp HHTSEEEEEEEETTTCCEEEE-STTSCEECGGGGHHHHHHHHHHHH
T ss_pred hcCCeEEEEEEECCCCCEEEE-CCCCccccHHHHHHHHHHHHHHHH
Confidence 3356789988885 6788754 578999999999999999999863
No 28
>1e25_A Extended-spectrum beta-lactamase PER-1; hydrolase, antibiotic resistance, class A cephalosporinase; 1.9A {Pseudomonas aeruginosa} SCOP: e.3.1.1
Probab=93.07 E-value=0.11 Score=37.95 Aligned_cols=43 Identities=23% Similarity=0.150 Sum_probs=34.9
Q ss_pred cCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhh
Q psy8039 33 ADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 33 ~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~ 76 (105)
-.+...|+.+.+. .|+++.. +.+.+|++-|+.|+|+.+.+|+.
T Consensus 15 ~~~~~~~v~v~d~~tg~~~~~-~~~~~~~~aS~~K~~ta~~~l~~ 58 (282)
T 1e25_A 15 GKKATVGVAVWGPDDLEPLLI-NPFEKFPMQSVFKLHLAMLVLHQ 58 (282)
T ss_dssp TSSSEEEEEEECTTCSSCEEE-STTCCEECGGGHHHHHHHHHHHH
T ss_pred hcCCeEEEEEEECCCCCEEEE-CCCCceecHHHHHHHHHHHHHHH
Confidence 3445788888875 5677654 67899999999999999999986
No 29
>1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1
Probab=93.04 E-value=0.11 Score=39.03 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=44.1
Q ss_pred CccCCcchhhhccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhcC
Q psy8039 21 RQVADYIPQLARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEELD 78 (105)
Q Consensus 21 G~vA~YIP~La~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G 78 (105)
..+..-|-++.+..+..+|+++.+. .|++++. +.+.+|+..|+.|+++.+.+|+...
T Consensus 43 ~~l~~~l~~~~~~~~~~~gv~v~D~~tG~~l~~-n~d~~~~~ASt~Kl~ta~~~l~~v~ 100 (266)
T 1alq_A 43 KNAAKELNDLEKKYNAHIGVYALDTKSGKEVKF-NSDKRFAYASTSKAINSAILLEQVP 100 (266)
T ss_dssp --CCCCHHHHHHHHTCEEEEEEEETTTCCEEEE-STTSCEECGGGHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEECCCCCEEEE-CCCCeEecHHHHHHHHHHHHHHHHh
Confidence 4455556666666678899999875 5777754 5789999999999999999999854
No 30
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1
Probab=92.91 E-value=0.21 Score=39.77 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=33.4
Q ss_pred EEEEEecCCcEEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 39 GVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 39 giai~tvdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
|+.+.+.+|+++..-+.+.+|++.|++|+++..++|+..
T Consensus 37 ~~il~d~tG~vL~~~n~d~~~~~AS~tKlmTa~~vl~~i 75 (369)
T 1tvf_A 37 SAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAV 75 (369)
T ss_dssp EEEEEETTSBEEEEESTTCCBCCGGGHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEECCCCeEccHHHHHHHHHHHHHHHH
Confidence 555666889988777899999999999999999999863
No 31
>2qpn_A Beta-lactamase GES-1; APO-enzyme, plasmid, hydrolase; 1.10A {Klebsiella pneumoniae} PDB: 3nia_A* 3ni9_A*
Probab=92.85 E-value=0.12 Score=38.19 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=34.1
Q ss_pred CCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhh
Q psy8039 35 PKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 35 p~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~ 76 (105)
+...|+.+.+. +|+++.. +.+.+|++-|+.|+|+.+.+|+.
T Consensus 36 ~~~~~v~v~d~~tg~~l~~-~~~~~~~~aS~~K~~ta~~~l~~ 77 (287)
T 2qpn_A 36 AAQIGVAIVDPQGEIVAGH-RMAQRFAMCSTFKFPLAALVFER 77 (287)
T ss_dssp TCEEEEEEECTTCCEEEEE-STTSCEECGGGGHHHHHHHHHHH
T ss_pred CCeEEEEEEECCCCCEEEE-CCCCceecHHHHHHHHHHHHHHH
Confidence 45788888875 5677754 67899999999999999999986
No 32
>1o7e_A L2 beta lactamase; hydrolase, class A; 1.51A {Stenotrophomonas maltophilia} SCOP: e.3.1.1 PDB: 1n4o_A
Probab=92.71 E-value=0.12 Score=37.87 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=36.7
Q ss_pred hccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 31 ARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 31 a~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
.+-.+...|+.+.+. +|+++.. +.+.+|++-|+.|+|+.+.+|+..
T Consensus 24 ~~~~~~~~~~~v~d~~tG~~l~~-n~~~~~~~aS~~K~~ta~~~l~~~ 70 (276)
T 1o7e_A 24 EKACAGRLGVTLLDTASGRRIGH-RQDERFPMCSTFKSMLAATVLSQA 70 (276)
T ss_dssp HHHHTSEEEEEEEETTTCCEEEE-STTSCEECGGGGHHHHHHHHHHHH
T ss_pred HHhcCCceEEEEEECCCCCEEEE-CCCCccccHHHHHHHHHHHHHHHH
Confidence 333456789988885 6788754 678999999999999999999863
No 33
>2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A beta-lactamase fold, transcription regulation, beta-lactamase induction, transcription; 1.80A {Streptomyces cacaoi}
Probab=92.55 E-value=0.14 Score=38.08 Aligned_cols=43 Identities=16% Similarity=0.097 Sum_probs=35.2
Q ss_pred CCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 34 DPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 34 dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
.+...|+.+.++ +|+++.. |.+.+|+.-|+.|+|+++.||+..
T Consensus 18 ~~~~~~vvv~d~~tG~i~a~-~~~~~~~pgSt~K~~~a~aal~~~ 61 (318)
T 2wuq_A 18 GGLTGSFLVRDLYTGEELGI-DPDTELPTASLVKLPLALATLERI 61 (318)
T ss_dssp TTEEEEEEEEETTTCCEEEE-STTCCEECGGGGHHHHHHHHHHHH
T ss_pred cCCeEEEEEEECCCCCEEEE-CCCCccccHHHHHHHHHHHHHHHH
Confidence 456778888875 6788765 567899999999999999999973
No 34
>3o3v_A Beta-lactamase, CLBP protein; alpha/beta, disulfide bridge, hydrolase; 2.40A {Escherichia coli}
Probab=92.40 E-value=0.18 Score=38.28 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=28.6
Q ss_pred CeEEEEEecCCc-EEeec----------CCCcccchhhhhHHHHHHHHHh
Q psy8039 37 YWGVSVCTVDGQ-RYSIG----------KTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 37 ~fgiai~tvdG~-~~~~G----------D~~~~FsiQSisK~f~~~lAL~ 75 (105)
-.+++|...+|+ ++..| +.++.|.|.|++|+|+-++++.
T Consensus 18 G~~v~v~~~~g~~~~~~G~~~~~~~~~~~~~t~f~i~SitK~~ta~~i~~ 67 (335)
T 3o3v_A 18 ALSVSVTIKGVRQRFVYGVADVASQKANTLDTVYELGSMSKAFTGLVVQI 67 (335)
T ss_dssp EEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGGHHHHHHHHHH
T ss_pred cEEEEEEEeCCEEEEEEEeccccCCCCCCCCCEeehhhhHHHHHHHHHHH
Confidence 345666456776 45677 7889999999999998665543
No 35
>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
Probab=92.30 E-value=0.13 Score=38.55 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=43.3
Q ss_pred chhhhccCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhcChHHHHHhhCCCC
Q psy8039 27 IPQLARADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHKYVGQEP 90 (105)
Q Consensus 27 IP~La~~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~V~~~VG~EP 90 (105)
|-++.+-.+...|+.+.+. +|++++. +.+.+|++.|+.|+++.+.+|+......+-+.|-..+
T Consensus 50 l~~~~~~~~~~~~v~v~d~~tg~~l~~-n~~~~~~~aS~~K~~ta~~~l~~~~~G~ld~~v~~~~ 113 (307)
T 1w7f_A 50 FAKLEEQFDAKLGIFALDTGTNRTVTY-RPDERFAFASTIKALTVGVLLQQKSIEDLNQRITYTR 113 (307)
T ss_dssp HHHHHHHHTCEEEEEEEETTTCCEEEE-STTSCEECGGGHHHHHHHHHHHHCCTGGGGCEECCCT
T ss_pred HHHHHHhcCCeEEEEEEECCCCCEEEE-CCCCccccHHHHHHHHHHHHHHHhcCCCCCceEEcCH
Confidence 3333333356788988885 6777754 6789999999999999999998753223444444433
No 36
>2j9o_A TLL2115 protein; penicillin-binding protein, hydrolase, lactamase, thioestera DD-peptidase; 1.50A {Synechococcus elongatus} PDB: 2jbf_A* 2j7v_A 2j8y_A*
Probab=91.11 E-value=0.44 Score=35.53 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=35.5
Q ss_pred chhhhccCC-CCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhh
Q psy8039 27 IPQLARADP-KYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 27 IP~La~~dp-~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~ 76 (105)
|-++.+-.| ...|+.+.+. +|+++.. +.+.+|++-|+.|+|+++.+|+.
T Consensus 24 l~~~~~~~~~~~~~~~v~d~~tG~il~~-~~~~~~~paS~~K~~ta~a~l~~ 74 (298)
T 2j9o_A 24 IQQLVSRQPNLTAGLYFFNLDSGASLNV-GGDQVFPAASTIKFPILVAFFKA 74 (298)
T ss_dssp HHHHHHTCTTCEEEEEEEETTTCEEEEE-BTTSCEECGGGGHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEEEEEECCCCCEEEE-CCCCeEecHhHHHHHHHHHHHHH
Confidence 333333333 3567777774 6787744 67899999999999999999853
No 37
>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding, peptidoglycan, transpeptidase, antibiotic resistance, hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB: 1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* 2xln_A* 2y5o_A* 2xdm_A* 2xk1_A* 2y4a_A* 2y55_A* 2y59_A* 2wke_A* 2y5r_A* 3zvt_A* 3zvw_A*
Probab=91.03 E-value=0.42 Score=39.48 Aligned_cols=50 Identities=24% Similarity=0.169 Sum_probs=44.1
Q ss_pred CCCCeEEEEEecC-CcEEeecCCCcccchhhhhHHHHHHHHHhhcChHHHH
Q psy8039 34 DPKYWGVSVCTVD-GQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVH 83 (105)
Q Consensus 34 dp~~fgiai~tvd-G~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~V~ 83 (105)
....+++.+.+.+ |+++..=+.+.+|+--|+.|+++-+.||+.+|.+.-|
T Consensus 19 ~~~~~~~~v~d~~tg~~l~~~n~~~~~~PAS~~Kl~Ta~~al~~lg~~~~~ 69 (489)
T 1w79_A 19 EGAVSGVVVVDTATGEELYSRDGGEQLLPASNMKLFTAAAALEVLGADHSF 69 (489)
T ss_dssp TTCEEEEEEEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHHTCTTCEE
T ss_pred CCCcEEEEEEECCCCCEeeeECCCCCcCccHHHHHHHHHHHHHhcCCCCeE
Confidence 4567999999977 8888888999999999999999999999999988543
No 38
>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase, peptidoglycan, beta-lactam, hydrolase, peptidoglycan synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB: 2j9p_A*
Probab=90.25 E-value=0.29 Score=39.94 Aligned_cols=51 Identities=22% Similarity=0.139 Sum_probs=43.9
Q ss_pred cCCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhcChHHHH
Q psy8039 33 ADPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVH 83 (105)
Q Consensus 33 ~dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~V~ 83 (105)
.....+++.+.+. .|+++..=+.+.+|+.-|+.|+++-..||+.+|.+.-|
T Consensus 21 ~~~~~~~~~v~d~~tg~~l~~~n~~~~~~pAS~~Kl~T~~~al~~l~~~~~~ 72 (462)
T 1w5d_A 21 LEGAMAGITVRSAETGAVLYEHSGDTRMRPASSLKLLTAAAALSVLGENYSF 72 (462)
T ss_dssp GTTCEEEEEEEETTTCCEEEEESTTSCBCCGGGGHHHHHHHHHHHHCTTCCC
T ss_pred CCCCeEEEEEEECCCCCEeeeECCCCCcCccHHHHHHHHHHHHHhcCCCCeE
Confidence 3457799999996 57887778999999999999999999999999987443
No 39
>2bcf_A Probable D-alanyl-D-alanine carboxypeptidase DACB2; penicillin-binding protein, DD-2 carboxypeptidase, directed evolution; 2.30A {Mycobacterium tuberculosis}
Probab=90.18 E-value=0.33 Score=37.08 Aligned_cols=44 Identities=27% Similarity=0.179 Sum_probs=35.8
Q ss_pred CeEEEEEe-cCCcEEeecCCCcccchhhhhHHHHHHHHHhhcChH
Q psy8039 37 YWGVSVCT-VDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQE 80 (105)
Q Consensus 37 ~fgiai~t-vdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e 80 (105)
.-++.+.+ ..|+++..=+.+.+|++.|+.|+++.+++|+....+
T Consensus 19 a~~~~v~D~~tG~vl~~~n~d~~~~pAS~tKlmta~~~le~~~ld 63 (276)
T 2bcf_A 19 AQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDELDLN 63 (276)
T ss_dssp CSEEEEEETTTCEEEEEESTTCCBCCGGGHHHHHHHHHHHHCCTT
T ss_pred ccEEEEEECCCCCEEEEECCCCcCCcHHHHHHHHHHHHHHhCCCC
Confidence 34677776 468877556789999999999999999999987644
No 40
>1es5_A DD-transpeptidase; penicillin-binding, serine peptidase, BET lactamase, hydrolase carboxypeptidase, hydrolase; 1.40A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1skf_A 1es2_A 1j9m_A 1esi_A 1es3_A 1es4_A
Probab=89.71 E-value=0.24 Score=37.11 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=31.0
Q ss_pred EEEEEe-cCCcEEeecCCCcccchhhhhHHHHHHHHHhhcC
Q psy8039 39 GVSVCT-VDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELD 78 (105)
Q Consensus 39 giai~t-vdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G 78 (105)
++.+.+ .+|+++..=+.+.+|++.|+.|+++.+++|+ .|
T Consensus 10 ~~~v~d~~tG~vl~~~n~~~~~~~AS~tKlmta~~~l~-~g 49 (262)
T 1es5_A 10 GGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLA-QS 49 (262)
T ss_dssp EEEEEETTTCCEEEEESTTCCBCCGGGGHHHHHHHHHT-CT
T ss_pred EEEEEECCCCCEEEEECCCCcCCcHHHHHHHHHHHHHH-cC
Confidence 455555 5688775557899999999999999999994 45
No 41
>2qmi_A PBP related beta-lactamase; PAB87, octamer, LU-HPDO3A, archaea, hydrolase; HET: DO3; 2.20A {Pyrococcus abyssi}
Probab=89.63 E-value=0.49 Score=37.44 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=28.0
Q ss_pred CeEEEEEecCCcE-Ee--ec----------CCCcccchhhhhHHHHHHHHHh
Q psy8039 37 YWGVSVCTVDGQR-YS--IG----------KTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 37 ~fgiai~tvdG~~-~~--~G----------D~~~~FsiQSisK~f~~~lAL~ 75 (105)
-++++| ..||++ ++ .| +.++.|.|-|+||+|+-++++.
T Consensus 21 G~~v~V-~~~g~~v~~~~~G~~~~~~~~~~~~dT~f~iaSvTK~fTa~~i~~ 71 (447)
T 2qmi_A 21 GISISI-IKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMK 71 (447)
T ss_dssp EEEEEE-EETTEEEEEEEEEEEETTTTEECCSSCBEECGGGHHHHHHHHHHH
T ss_pred eEEEEE-EECCEEEEEEeeeccccccCCCCCCCCEEecceehHHHHHHHHHH
Confidence 445566 567875 44 34 6789999999999999777654
No 42
>3tg9_A Penicillin-binding protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.20A {Bacillus halodurans}
Probab=89.61 E-value=0.56 Score=36.02 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=27.2
Q ss_pred EEEEEecCCc-EE--eec----------CCCcccchhhhhHHHHHHHHHh
Q psy8039 39 GVSVCTVDGQ-RY--SIG----------KTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 39 giai~tvdG~-~~--~~G----------D~~~~FsiQSisK~f~~~lAL~ 75 (105)
|+.++-.+|+ ++ ..| +.++.|.|.|++|+|+-++++.
T Consensus 18 G~v~v~~~g~~v~~~~~G~a~~~~~~p~~~~t~f~iaSitK~~Ta~~i~~ 67 (356)
T 3tg9_A 18 GTALMKKGEDIPFIASLGFANRAERIPNEHHTRFGIASGCKLFTAIAICQ 67 (356)
T ss_dssp EEEEEEETTSCCEEEEESEEETTTTEECCTTCBEECGGGGHHHHHHHHHH
T ss_pred eEEEEEECCeEEEEeeecccccccCCCCCCCCeEEcccchHHHHHHHHHH
Confidence 3444566776 34 456 8899999999999998766643
No 43
>4gdn_A Protein FLP; peptidase, alpha/beta, hydrolase; HET: PE4; 3.20A {Staphylococcus aureus}
Probab=89.48 E-value=0.5 Score=35.79 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=17.9
Q ss_pred CCCcccchhhhhHHHHHHHHHh
Q psy8039 54 KTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 54 D~~~~FsiQSisK~f~~~lAL~ 75 (105)
+.++.|.|-|++|+|+-++++.
T Consensus 59 ~~~T~f~iaSvtK~~Ta~~i~~ 80 (342)
T 4gdn_A 59 SPTTKYEIASNTKAFTGLAILK 80 (342)
T ss_dssp CTTCEEECGGGGHHHHHHHHHH
T ss_pred CCCCEEeeeeHHHHHHHHHHHH
Confidence 5678899999999998665544
No 44
>3mzf_A D-alanyl-D-alanine carboxypeptidase DACA; beta-lactam antibiotic, penicillin-binding protein, DD- carboxypeptidase, hydrolase; HET: IM2; 1.50A {Escherichia coli} PDB: 1nzu_A 1nzo_A* 3beb_A* 3bec_A* 3mzd_A* 3mze_A* 1z6f_A* 1nj4_A 1hd8_A 1sdn_A 4drt_A
Probab=89.33 E-value=0.59 Score=37.34 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=29.8
Q ss_pred EEe-cCCcEEeecCCCcccchhhhhHHHHHHHHHhh
Q psy8039 42 VCT-VDGQRYSIGKTNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 42 i~t-vdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~ 76 (105)
+.+ ..|+++..-+.+.+|++.|+.|+++..++|+.
T Consensus 22 l~D~~tG~vL~~kn~d~~~~~AS~tKlmTa~~vl~~ 57 (363)
T 3mzf_A 22 LIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQA 57 (363)
T ss_dssp EEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHH
T ss_pred EEECCCCCEeEEECCCCcCcchHHHHHHHHHHHHHH
Confidence 344 45888877889999999999999999999875
No 45
>3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A {Haemophilus influenzae}
Probab=88.09 E-value=0.64 Score=36.54 Aligned_cols=38 Identities=11% Similarity=-0.081 Sum_probs=31.4
Q ss_pred EEEEEe-cCCcEEeecCCCcccchhhhhHHHHHHHHHhh
Q psy8039 39 GVSVCT-VDGQRYSIGKTNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 39 giai~t-vdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~ 76 (105)
+..+.+ .+|+++..-+.+.+|++.|++|+++..++++.
T Consensus 11 ~a~l~D~~tG~vl~~~n~d~~~~~AS~tKlmTa~~vl~~ 49 (344)
T 3a3j_A 11 TYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVA 49 (344)
T ss_dssp EEEEEETTTCCEEEEESTTSCBCCGGGHHHHHHHHHHHH
T ss_pred EEEEEECCCCcEEEEECCCCeEccHHHHHHHHHHHHHHH
Confidence 444555 57888777789999999999999999998875
No 46
>2xep_A ORF12; hydrolase; 1.50A {Streptomyces clavuligerus} PDB: 2xf3_A* 2xfs_A* 2xft_A 2xgn_A 2xh9_A*
Probab=87.98 E-value=0.58 Score=38.11 Aligned_cols=49 Identities=10% Similarity=0.059 Sum_probs=36.8
Q ss_pred hhhccCCCCeEEEEEecC-C--cEEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 29 QLARADPKYWGVSVCTVD-G--QRYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 29 ~La~~dp~~fgiai~tvd-G--~~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
++.+.-+..+|+++.+.+ | +++..=+.+.+|++.|+.|+++...+++.+
T Consensus 136 ~~~~~~~~~~~v~v~D~~tG~~~~~~~~n~d~~~~~ASt~Kl~~a~~vl~~v 187 (458)
T 2xep_A 136 ETLHTPGVQHSVYAVRLTPDGHEVLHASAPERPMPTGSAYKLYLMRALVAEI 187 (458)
T ss_dssp HHHCCTTEEEEEEEEEEETTEEEEEEEESTTSCEECGGGHHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEEEECCCCCceEEEEECCCCcCccHHHHHHHHHHHHHHHH
Confidence 344445678999998754 7 444334678899999999999998888764
No 47
>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A {Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A*
Probab=87.95 E-value=1.2 Score=36.21 Aligned_cols=46 Identities=17% Similarity=-0.008 Sum_probs=40.8
Q ss_pred CCeEEEEEecC-CcEEeecCCCcccchhhhhHHHHHHHHHhhcChHH
Q psy8039 36 KYWGVSVCTVD-GQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81 (105)
Q Consensus 36 ~~fgiai~tvd-G~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~ 81 (105)
..+++.+.+.+ |+++..=+.+.+|+.-|+.|+++-.+||+.+|.+.
T Consensus 15 ~~~~~~v~d~~tg~vl~~~n~~~~~~PAS~tKl~T~~~al~~l~~~~ 61 (453)
T 3a3d_A 15 SNAGVIAKNINQNQIIADYNGSTFMLPASTQKVFTAVAAKLALGDQF 61 (453)
T ss_dssp CEEEEEEEETTTTEEEEEESTTSCBCCGGGGHHHHHHHHHHHTCTTC
T ss_pred CceEEEEEECCCCCEeEeECCCCCcCccHHHHHHHHHHHHHhcCCCC
Confidence 36888888865 88888889999999999999999999999999763
No 48
>4hes_A Beta-lactamase class A-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, COG COG2367, H; HET: MSE; 1.90A {Veillonella parvula}
Probab=87.56 E-value=1.1 Score=32.88 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=33.0
Q ss_pred CCCeEEEEEec-CCc---EEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 35 PKYWGVSVCTV-DGQ---RYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 35 p~~fgiai~tv-dG~---~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
+..+++++... ||+ ++..=+.+.+|+..|+.|+++.+.+++..
T Consensus 27 ~~~~~~~v~~l~d~~~~~vl~~~n~d~~~~~AS~~Kl~~~~~~~~~v 73 (275)
T 4hes_A 27 AGNISYAVLQFDDEEEPTLIAARGENTVHSSASLIKVLIMEYVFHLA 73 (275)
T ss_dssp TSEEEEEEEEECTTSCCEEEEEESTTCCEECGGGGHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEcCCCceEEEEECCCceecchHHHHHHHHHHHHHHH
Confidence 45788888764 443 34444688999999999999999998863
No 49
>2iwb_A Methicillin resistance MECR1 protein; antibiotic resistance, bacterial antibiotic resistance, methicillin resistance, beta-lactamic antibiotics, MRSA; 1.8A {Staphylococcus aureus} PDB: 2iwc_A* 2iwd_A*
Probab=87.45 E-value=0.77 Score=33.68 Aligned_cols=40 Identities=8% Similarity=0.008 Sum_probs=29.7
Q ss_pred CeEEEEEec-CCcEEeecC--CCcccchhhhhHHHHHHHHHhh
Q psy8039 37 YWGVSVCTV-DGQRYSIGK--TNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 37 ~fgiai~tv-dG~~~~~GD--~~~~FsiQSisK~f~~~lAL~~ 76 (105)
.-++.+.+. .|++++..- +...|+..|+-|||+++.||+.
T Consensus 23 ~ga~vv~d~~TG~il~~~~n~a~~~~~pGStfK~~~~~aaLe~ 65 (246)
T 2iwb_A 23 DGSFVLYNEREQAYSIYNEPESKQRYSPNSTYKIYLALMAFDQ 65 (246)
T ss_dssp EEEEEEEETTTTEEEEESHHHHTBCBCCGGGGHHHHHHHHHHT
T ss_pred cEEEEEEECCCCCEEEEChHHhccccCCchHHHHHHHHHHHHc
Confidence 344555554 788886541 3349999999999999999986
No 50
>3hlc_A Transesterase, LOVD; alpha/beta hydrolase fold, transferase; HET: PG4; 2.00A {Aspergillus terreus} PDB: 3hld_A* 3hlf_A* 3hle_A* 3hlg_A* 3hlb_A 3hl9_A
Probab=87.21 E-value=0.93 Score=35.90 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=27.2
Q ss_pred CeEEEEEecCCc-EE--eec---------------CCCcccchhhhhHHHHHHHHHh
Q psy8039 37 YWGVSVCTVDGQ-RY--SIG---------------KTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 37 ~fgiai~tvdG~-~~--~~G---------------D~~~~FsiQSisK~f~~~lAL~ 75 (105)
-..++|++.||+ +| ..| +.++.|.|-|++|+|+-++++.
T Consensus 51 G~~v~vv~~~G~iv~~~~~G~~~~~~~~~~~~~p~~~dt~f~i~S~TK~~ta~~i~~ 107 (432)
T 3hlc_A 51 GAVIMARDASGNLNYTRCFGARTVRRDENNQLPPLQVDTPCRLASATKLLTTIMVLQ 107 (432)
T ss_dssp EEEEEEEESSSSCEEEEEEEBSCSSCCTTSCCCBCCTTCCEECGGGHHHHHHHHHHH
T ss_pred eEEEEEEecCCeEEEEeeeeeccccccCccCCCCCCCCCEEEchhhHHHHHHHHHHH
Confidence 344455568997 44 356 4568899999999999555543
No 51
>1ci9_A ESTB, protein (carboxylesterase); hydrolase, caboxylesterase; HET: DFP; 1.80A {Burkholderia gladioli} SCOP: e.3.1.1 PDB: 1ci8_A*
Probab=87.03 E-value=1 Score=34.59 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=18.7
Q ss_pred CCCcccchhhhhHHHHHHHHHh
Q psy8039 54 KTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 54 D~~~~FsiQSisK~f~~~lAL~ 75 (105)
+.++.|.|.|++|+|+-++++.
T Consensus 66 ~~dt~f~iaSvtK~~Ta~~i~~ 87 (392)
T 1ci9_A 66 REDTLFRLASVTKPIVALAVLR 87 (392)
T ss_dssp CTTCBEECGGGHHHHHHHHHHH
T ss_pred CCCCeEeeeechHHHHHHHHHH
Confidence 6789999999999999766654
No 52
>2ffy_A Beta-lactamase; AMPC, deacylation, transition state, boronic acid, hydrolase; HET: SM3; 1.07A {Escherichia coli} SCOP: e.3.1.1 PDB: 1pi5_A* 1pi4_A* 2hds_A* 1c3b_A* 1fco_A* 1ga9_A* 1iem_A* 1kds_A* 1kdw_A* 1ke0_A* 1ke3_A* 1iel_A 1kvm_A* 1l2s_A* 1ll5_A* 1ll9_A* 1llb_A* 1mxo_A* 1my8_A* 1xgi_A* ...
Probab=86.89 E-value=0.95 Score=34.80 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=26.6
Q ss_pred CeEEEEEecCCcEEe--ec----------CCCcccchhhhhHHHHHHHHHh
Q psy8039 37 YWGVSVCTVDGQRYS--IG----------KTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 37 ~fgiai~tvdG~~~~--~G----------D~~~~FsiQSisK~f~~~lAL~ 75 (105)
-.+++|. .+|+++. .| +.++.|.|-|++|+|+-++++.
T Consensus 24 G~~v~v~-~~g~~~~~~~G~~~~~~~~~~~~~t~f~iaS~tK~~Ta~~i~~ 73 (358)
T 2ffy_A 24 GMAVAVI-YQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGD 73 (358)
T ss_dssp EEEEEEE-ETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHH
T ss_pred eEEEEEE-ECCEEEEEEEeecccccCCCCCCCCeEEeeeeHHHHHHHHHHH
Confidence 3445555 5777442 45 5789999999999998666543
No 53
>1zkj_A CMY-10, extended-spectrum beta-lactamase; plasmid, class C, hydrolase; 1.55A {Enterobacter aerogenes}
Probab=86.74 E-value=1.1 Score=34.35 Aligned_cols=52 Identities=29% Similarity=0.270 Sum_probs=31.8
Q ss_pred cCCcchhhh-ccCCCCeEEEEEecCCcEE--eec----------CCCcccchhhhhHHHHHHHHHh
Q psy8039 23 VADYIPQLA-RADPKYWGVSVCTVDGQRY--SIG----------KTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 23 vA~YIP~La-~~dp~~fgiai~tvdG~~~--~~G----------D~~~~FsiQSisK~f~~~lAL~ 75 (105)
+.++|.++- +-+-.-.+++|.. +|+++ ..| +.++.|.|-|++|+|+-++++.
T Consensus 13 l~~~~~~~~~~~~~~G~~v~V~~-~g~~~~~~~G~~~~~~~~~~~~~t~f~iaS~tK~~Ta~~i~~ 77 (359)
T 1zkj_A 13 VDASIQPLLKEHRIPGMAVAVLK-DGKAHYFNYGVANRESGAGVSEQTLFEIGSVSKTLTATLGAY 77 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEE-TTEEEEEEEEBSCTTTCCBCCTTCBEECGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEEEE-CCEEEEEEEEecccccCCCCCCCCeEechhhHHHHHHHHHHH
Confidence 334444432 2233344555554 77643 346 5678999999999998766644
No 54
>2drw_A DAA, D-amino acid amidase; penicillin recognizing protein, D-stereospecific, hydrophobic, hydrolase; 2.10A {Ochrobactrum anthropi} SCOP: e.3.1.1 PDB: 2dns_A 2efu_A* 2efx_A*
Probab=86.46 E-value=1.1 Score=34.43 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=26.9
Q ss_pred CeEEEEEec-CCc-EEe--ec----------CCCcccchhhhhHHHHHHHHHh
Q psy8039 37 YWGVSVCTV-DGQ-RYS--IG----------KTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 37 ~fgiai~tv-dG~-~~~--~G----------D~~~~FsiQSisK~f~~~lAL~ 75 (105)
.-|++++-+ +|+ ++. .| +.++.|.|-|++|+|+-++++.
T Consensus 20 ~pG~~v~V~~~g~~v~~~~~G~ad~~~~~p~~~dt~f~iaS~TK~~Ta~~i~~ 72 (363)
T 2drw_A 20 VVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHL 72 (363)
T ss_dssp CCEEEEEEECTTSCEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHH
T ss_pred CCeEEEEEEECCcEEEEEeEEeccccCCCCCCCCCeeechhhhHHHHHHHHHH
Confidence 445655544 665 333 45 6789999999999998665543
No 55
>3v39_A D-alanyl-D-alanine carboxypeptidase; peptidoglycan transpeptidase fold, endopeptidase, serine MOD hepes buffer molecule, hydrolase; HET: PGE; 1.45A {Bdellovibrio bacteriovorus}
Probab=86.37 E-value=0.29 Score=40.15 Aligned_cols=51 Identities=18% Similarity=0.046 Sum_probs=43.7
Q ss_pred CCCCeEEEEEec-CCcEEeecCCCcccchhhhhHHHHHHHHHhhcChHHHHH
Q psy8039 34 DPKYWGVSVCTV-DGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHK 84 (105)
Q Consensus 34 dp~~fgiai~tv-dG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e~V~~ 84 (105)
..+.+|+.|.+. .|+++..-+.+.+|+--|+.|+++-+.||+.+|.+.-|+
T Consensus 4 ~~~a~~~~v~D~~tG~vl~~~n~~~~~~PAS~~Kl~Ta~~al~~lg~d~rf~ 55 (418)
T 3v39_A 4 YLNSMCHMAANSKTQQIQGDDNKDDKFPLASISKVVTTLWAVDRLGPDYRFK 55 (418)
T ss_dssp EEEEEEEEETTCSSCCCEECTTTTSEEECGGGHHHHHHHHHHHHHCTTCCCE
T ss_pred cccceEEEEEECCCCCEeeeeCCCCCcCccHHHHHHHHHHHHHhcCCCceEE
Confidence 345678888875 589888889999999999999999999999999986554
No 56
>2wzx_A Beta-lactamase; inhibitor, hydrolase, antibiotic resistance; HET: ZX0; 1.40A {Pseudomonas aeruginosa} PDB: 2wzz_A* 3s1y_A* 3s22_A*
Probab=86.36 E-value=1.1 Score=34.66 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=26.8
Q ss_pred CeEEEEEecCCcEE--eec----------CCCcccchhhhhHHHHHHHHHh
Q psy8039 37 YWGVSVCTVDGQRY--SIG----------KTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 37 ~fgiai~tvdG~~~--~~G----------D~~~~FsiQSisK~f~~~lAL~ 75 (105)
-.+++|. .+|+++ ..| +.++.|.|-|++|+|+-++++.
T Consensus 27 G~~v~v~-~~g~~~~~~~G~~~~~~~~p~~~~t~f~iaS~tK~~Ta~~i~~ 76 (371)
T 2wzx_A 27 GLAVAIS-LKGEPHYFSYGLASKEDGRRVTPETLFEIGSVSKTFTATLAGY 76 (371)
T ss_dssp EEEEEEE-ETTEEEEEEEEBSCTTTCCBCCTTCEEECGGGHHHHHHHHHHH
T ss_pred eEEEEEE-ECCEEEEEEEeeccccCCCCCCCCCEEeehhhHHHHHHHHHHH
Confidence 3445555 477744 346 5678999999999999776644
No 57
>1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis, beta-lactam, beta-sultam, sulfonylation, hydrolase; HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A* 1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A*
Probab=86.29 E-value=0.91 Score=34.64 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=26.5
Q ss_pred CeEEEEEecCCc-EEe--ec----------CCCcccchhhhhHHHHHHHHHh
Q psy8039 37 YWGVSVCTVDGQ-RYS--IG----------KTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 37 ~fgiai~tvdG~-~~~--~G----------D~~~~FsiQSisK~f~~~lAL~ 75 (105)
.-|++++-.+|+ ++. .| +.++.|.|-|++|+|+-++++.
T Consensus 23 ~pG~~v~v~~g~~v~~~~~G~a~~~~~~p~~~dt~f~iaSvTK~~Ta~~i~~ 74 (349)
T 1yqs_A 23 APGAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQ 74 (349)
T ss_dssp CSEEEEEEEETTEEEEEEEEBSCTTTCCBCCTTCBEECGGGHHHHHHHHHHH
T ss_pred CCeEEEEEEcCCEEEEEeEEEeecccCCCCCCCCeEecccchHHHHHHHHHH
Confidence 345554446675 333 56 5678999999999998665543
No 58
>2ex2_A Penicillin-binding protein 4; cephem, penem, D-Ala alanine-carboxypeptidase, D-alanyl-D-alanine-endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A*
Probab=86.18 E-value=0.76 Score=37.51 Aligned_cols=44 Identities=18% Similarity=-0.002 Sum_probs=39.7
Q ss_pred CeEEEEEecC-CcEEeecCCCcccchhhhhHHHHHHHHHhhcChH
Q psy8039 37 YWGVSVCTVD-GQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQE 80 (105)
Q Consensus 37 ~fgiai~tvd-G~~~~~GD~~~~FsiQSisK~f~~~lAL~~~G~e 80 (105)
.+++.+.+.+ |+++..=+.+.+|+.-|+.|+++-..||+.+|.+
T Consensus 16 ~~~~~v~d~~tg~vl~~~n~~~~~~PAS~tKl~Ta~~al~~l~~~ 60 (458)
T 2ex2_A 16 NLALMVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQLGPD 60 (458)
T ss_dssp EEEEEEEETTCSSCSEEESTTSCBCCGGGHHHHHHHHHHHHTCTT
T ss_pred ceEEEEEECCCCCEeeeECCCCCcCchHHHHHHHHHHHHHhhCCC
Confidence 6888888866 7887788899999999999999999999999976
No 59
>1xp4_A D-alanyl-D-alanine carboxypeptidase; five-stranded antiparallel beta-sheet, omega-like loop, hydrolase; 2.80A {Streptococcus pneumoniae R6} SCOP: b.105.1.1 e.3.1.1
Probab=86.00 E-value=0.94 Score=36.09 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=31.1
Q ss_pred EEEEEe-cCCcEEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 39 GVSVCT-VDGQRYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 39 giai~t-vdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
+..+.+ ..|+++..=+.+.+|++.|++|+++..++|+..
T Consensus 16 ~ail~d~~tG~vl~~~n~d~~~~~AS~tKlmta~~vl~~i 55 (379)
T 1xp4_A 16 HAIAVEANTGKILYEKDATQPVEIASITKLITVYLVYEAL 55 (379)
T ss_dssp SEEEEETTTTEEEEEESCSSCEECGGGGHHHHHHHHHHHH
T ss_pred EEEEEECCCCcEEEEECCCCcCCchHHHHHHHHHHHHHHH
Confidence 334555 568887666789999999999999999999863
No 60
>2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A {Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A 2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A* 2zly_A* 2zm9_A* 2zm2_A*
Probab=85.72 E-value=0.88 Score=35.76 Aligned_cols=36 Identities=11% Similarity=-0.055 Sum_probs=26.3
Q ss_pred EEEEEecCCcE-Eeec----CCCcccchhhhhHHHHHHHHHh
Q psy8039 39 GVSVCTVDGQR-YSIG----KTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 39 giai~tvdG~~-~~~G----D~~~~FsiQSisK~f~~~lAL~ 75 (105)
|++|. .+|++ ++.+ +.++.|.|.|++|.|+-++++.
T Consensus 84 gv~V~-~~G~iv~~~~~G~~~~~t~f~i~SvTK~~Ta~~i~~ 124 (392)
T 2dcf_A 84 AFLVL-RGTEVVAEYYRAGFAPDDRHLLMAVSKSLCGTVVGA 124 (392)
T ss_dssp EEEEE-ETTEEEEEEECTTCCTTCCEECTTHHHHHHHHHHHH
T ss_pred EEEEE-ECCEEEEEeccCCCCCCCeeeeeeeHHHHHHHHHHH
Confidence 66654 57874 5443 7889999999999999555543
No 61
>2x02_A Beta-lactamase OXA-10; class D, hydrolase, antibiotic resistance; HET: KCX PG4; 1.35A {Pseudomonas aeruginosa} PDB: 1k4e_A* 1k6r_A* 1k6s_A* 1k4f_A* 2x01_A* 2wgv_A* 2wgw_A* 2wkh_A* 2wki_A 2rl3_A* 2hpb_A 2hp9_A 2hp6_A 2wgi_A* 2hp5_A 1fof_A 1k55_A* 1e4d_A* 1ewz_A 1k54_A* ...
Probab=85.72 E-value=1.1 Score=32.91 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=29.8
Q ss_pred CeEEEEEe-cCCcEEeec-C-CCcccchhhhhHHHHHHHHHhh
Q psy8039 37 YWGVSVCT-VDGQRYSIG-K-TNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 37 ~fgiai~t-vdG~~~~~G-D-~~~~FsiQSisK~f~~~lAL~~ 76 (105)
.-++.+.+ .+|+++... + +...|+..|+.|||+++.||+.
T Consensus 20 ~~~~vv~d~~tG~ila~~~nra~~~~~pgStfK~~~~~aaLe~ 62 (248)
T 2x02_A 20 NGVFVLCKSSSKSCATNDLARASKEYLPASTFKIPNAIIGLET 62 (248)
T ss_dssp CEEEEEEESSTTSEEESCHHHHTCEECCGGGGHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCEEEECchhhcCCCCChHHHHHHHHHHHHHc
Confidence 34555555 578888753 1 2356999999999999999986
No 62
>1xkz_A Regulatory protein BLAR1; beta-lactam receptor, signal transduction, signaling protein; HET: CAZ EPE; 1.75A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1xa1_A* 1xa7_A* 3q7z_A* 3q7v_A* 3q81_A* 3q82_A* 3uy6_A
Probab=85.67 E-value=0.89 Score=33.52 Aligned_cols=40 Identities=10% Similarity=0.074 Sum_probs=29.9
Q ss_pred CeEEEEEe-cCCcEEeecCC--CcccchhhhhHHHHHHHHHhh
Q psy8039 37 YWGVSVCT-VDGQRYSIGKT--NIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 37 ~fgiai~t-vdG~~~~~GD~--~~~FsiQSisK~f~~~lAL~~ 76 (105)
.-++.+.+ .+|+++...-. ...|+..|+-|||+++.||+.
T Consensus 30 ~ga~vv~d~~TG~il~~~~n~~~~~~~pGStfK~~~~~aaLe~ 72 (255)
T 1xkz_A 30 SGSFVMYSMKKDKYYIYNEKESRKRYSPNSTYKIYLAMFGLDR 72 (255)
T ss_dssp EEEEEEEETTTTEEEEESHHHHTSEECCGGGGHHHHHHHHHHT
T ss_pred cEEEEEEECCCCCEEeeCchhcCCCcCCchHHHHHHHHHHHHc
Confidence 33455555 47888855322 378999999999999999986
No 63
>2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic resistance, hydrolase, periplasm; 2.26A {Pseudomonas fluorescens}
Probab=85.36 E-value=1.3 Score=34.04 Aligned_cols=37 Identities=32% Similarity=0.355 Sum_probs=26.2
Q ss_pred eEEEEEecCCcEE--eec----------CCCcccchhhhhHHHHHHHHHh
Q psy8039 38 WGVSVCTVDGQRY--SIG----------KTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 38 fgiai~tvdG~~~--~~G----------D~~~~FsiQSisK~f~~~lAL~ 75 (105)
.+++|. .+|+++ ..| +.++.|.|-|++|+|+-++++.
T Consensus 24 ~~v~v~-~~g~~~~~~~G~~~~~~~~~~~~~t~f~iaS~tK~~ta~~i~~ 72 (358)
T 2qz6_A 24 LSVAVI-QNGKAQYFNYGVANKDSKQPITENTLFEIGSVSKTFTATLAGY 72 (358)
T ss_dssp EEEEEE-ETTEEEEEEEEBSCTTTCCBCCTTCBEECGGGHHHHHHHHHHH
T ss_pred EEEEEE-ECCEEEEEEEEeeccCCCCCCCCCCEEechhhHHHHHHHHHHH
Confidence 445555 477743 345 5678999999999999766544
No 64
>3ita_A D-alanyl-D-alanine carboxypeptidase DACC; ppenicillin-binding protein, BP6, DD-carboxypeptidase, peptidoglycan, ampicillin, acyl-enzyme complex; HET: AIX AIC; 1.80A {Escherichia coli} PDB: 3it9_A* 3itb_A*
Probab=84.92 E-value=1.2 Score=35.44 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=30.6
Q ss_pred EEEe-cCCcEEeecCCCcccchhhhhHHHHHHHHHhh
Q psy8039 41 SVCT-VDGQRYSIGKTNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 41 ai~t-vdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~ 76 (105)
.+.+ ..|+++..-+.+.+|++.|+.|+++..++|+.
T Consensus 17 il~D~~tG~vL~~kn~d~~~~~AS~tKlmTa~~vl~~ 53 (352)
T 3ita_A 17 ILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQA 53 (352)
T ss_dssp EEEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHH
T ss_pred EEEECCCCCEeEEECCCCcccchHHHHHHHHHHHHHH
Confidence 3444 56898877899999999999999999999875
No 65
>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, antibiotics; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A*
Probab=83.18 E-value=1.8 Score=35.88 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=32.6
Q ss_pred EEEEEecCCcEEeecCCCcccchhhhhHHHHHHHHHhhc
Q psy8039 39 GVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEEL 77 (105)
Q Consensus 39 giai~tvdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~~ 77 (105)
+..+.+..|+++..=+.+.+|++.|+.|+++..++++..
T Consensus 73 sail~D~TG~vL~~kNad~~~~pAS~TKlMTa~~vle~i 111 (453)
T 3hun_A 73 SAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAV 111 (453)
T ss_dssp EEEEEETTSBEEEEESTTCCBCCGGGHHHHHHHHHHHHH
T ss_pred EEEEEECCCCEEEEECCCCcccchHHHHHHHHHHHHHHH
Confidence 444555789987777899999999999999999999863
No 66
>3rju_A Beta-lactamase/D-alanine carboxypeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE CIT; 1.50A {Yersinia pestis} PDB: 3ozh_A*
Probab=82.93 E-value=1.8 Score=32.78 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=25.4
Q ss_pred CCeEEEEEecCCcEEe--ec----------CCCcccchhhhhHHHHHHHHH
Q psy8039 36 KYWGVSVCTVDGQRYS--IG----------KTNIPFTIQSCSKPLTYAIAL 74 (105)
Q Consensus 36 ~~fgiai~tvdG~~~~--~G----------D~~~~FsiQSisK~f~~~lAL 74 (105)
.-.+++|.. +|+++. .| +.++.|.|.|++|+|+-++++
T Consensus 24 ~G~~~~v~~-~g~~~~~~~G~~~~~~~~~~~~~t~f~i~S~tK~~ta~~i~ 73 (351)
T 3rju_A 24 VGMALVVID-NNQVVNRSFGETQPGNNIRPRPDSLIRIASITKLMTSEIMV 73 (351)
T ss_dssp SEEEEEEEE-TTEEEEEEEECSSTTCCCCCCTTCBEECGGGHHHHHHHHHH
T ss_pred CeEEEEEEE-CCEEEEEEEEeccCCCCCCCCCCCEEEehhhHHHHHHHHHH
Confidence 344555554 566443 55 567899999999999954443
No 67
>1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase induction, penicillin-binding protein, membrane protein; 2.50A {Bacillus licheniformis} SCOP: e.3.1.1
Probab=82.59 E-value=1.1 Score=33.31 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=29.2
Q ss_pred eEEEEEe-cCCcEEeecC--CCcccchhhhhHHHHHHHHHhh
Q psy8039 38 WGVSVCT-VDGQRYSIGK--TNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 38 fgiai~t-vdG~~~~~GD--~~~~FsiQSisK~f~~~lAL~~ 76 (105)
-++.+.+ .+|+++...- +...|+..|+.|||+++.||+.
T Consensus 35 ga~vv~d~~TG~ila~~~nra~~~~~pGStfK~~~~~aaLe~ 76 (262)
T 1nrf_A 35 GGFVLFNSNRKKYTIYNRKESTSRFAPASTYKVFSALLALES 76 (262)
T ss_dssp EEEEEEETTTTEEEEECHHHHHSCBCCGGGGHHHHHHHHHHH
T ss_pred EEEEEEECCCCCEEEECcccccCCCCCchHHHHHHHHHHHHC
Confidence 3566666 4788876531 2246999999999999999986
No 68
>1ei5_A D-aminopeptidase, DAP; penicillin binding protein, alpha/beta domain, beta barrel domain, hydrolase; 1.90A {Ochrobactrum anthropi} SCOP: b.61.3.1 b.61.3.1 e.3.1.1
Probab=81.66 E-value=1.8 Score=35.12 Aligned_cols=37 Identities=32% Similarity=0.371 Sum_probs=26.5
Q ss_pred eEEEEEecCCc-EE--eec----------CCCcccchhhhhHHHHHHHHHh
Q psy8039 38 WGVSVCTVDGQ-RY--SIG----------KTNIPFTIQSCSKPLTYAIALE 75 (105)
Q Consensus 38 fgiai~tvdG~-~~--~~G----------D~~~~FsiQSisK~f~~~lAL~ 75 (105)
.+++|+ .+|+ ++ ..| +.++.|.|-|++|+|+-++++.
T Consensus 25 ~~v~V~-~~g~~v~~~~~G~~~~~~~~~~~~dT~f~iaSvTK~fTa~~i~~ 74 (520)
T 1ei5_A 25 GVVAVV-KDGEVVLQHAWGFADLRTRTPMTLDTRMPICSVSKQFTCAVLLD 74 (520)
T ss_dssp EEEEEE-ETTEEEEEEEEEEEETTTTEECCTTCCEECGGGHHHHHHHHHHH
T ss_pred EEEEEE-ECCEEEEEEEEEecccccCCCCCCCCeEechhhHHHHHHHHHHH
Confidence 455555 4776 33 355 6789999999999998666554
No 69
>3mfd_A D-alanyl-D-alanine carboxypeptidase DACB; penicillin-binding protein 5*, beta-lactamase, structural GE PSI-2, protein structure initiative; HET: CIT; 1.75A {Bacillus subtilis}
Probab=79.06 E-value=2.8 Score=33.17 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=30.6
Q ss_pred EEEEecCCcEEeecCCCcccchhhhhHHHHHHHHHhh
Q psy8039 40 VSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 40 iai~tvdG~~~~~GD~~~~FsiQSisK~f~~~lAL~~ 76 (105)
+.+-...|+++..=+.+.+|++-|+.|+++..+||+.
T Consensus 13 il~D~~tG~vL~~kn~d~~~~pAS~tKlmTa~~al~~ 49 (334)
T 3mfd_A 13 IIIDGASGRVLYAKDEHQKRRIASITKIMTAVLAIES 49 (334)
T ss_dssp EEEETTTCCEEEEESTTCCBCCGGGGHHHHHHHHHHT
T ss_pred EEEECCCCcEeeEECCCCcccchHHHHHHHHHHHHhc
Confidence 3333457898877889999999999999999999975
No 70
>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595, national institute of allergy and infectious diseases; HET: MSE; 1.60A {Bacillus anthracis}
Probab=66.82 E-value=6.8 Score=30.63 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=23.7
Q ss_pred EEecCCcEE-e--e--cCCCcccchhhhhHHHHHHHHH
Q psy8039 42 VCTVDGQRY-S--I--GKTNIPFTIQSCSKPLTYAIAL 74 (105)
Q Consensus 42 i~tvdG~~~-~--~--GD~~~~FsiQSisK~f~~~lAL 74 (105)
++-.||+++ + . -+.+++|.|.|++|+|+-++++
T Consensus 114 lV~k~GkIv~E~Y~~~~~~dt~~~i~SvtKs~ta~~i~ 151 (422)
T 4gb7_A 114 VVVHNGQLVYERYFNGYNESEPHGMASLAKVFTGAIIQ 151 (422)
T ss_dssp EEEETTEEEEEEECTTCCTTSCEECGGGGHHHHHHHHH
T ss_pred EEEECCEEEEEeCCCCCCCCCeeeeeeccHHHHHHHHH
Confidence 344688744 2 1 3678999999999999866553
No 71
>3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis, antibiotics design, transferase, hydrolase; HET: M0E; 2.16A {Escherichia coli} PDB: 3fwl_A* 3vma_A*
Probab=63.26 E-value=10 Score=33.05 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=28.9
Q ss_pred CeEEEEEe-cCCcEEe-ecCCC-----------cccchhhhhHHHHHHHHHhh
Q psy8039 37 YWGVSVCT-VDGQRYS-IGKTN-----------IPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 37 ~fgiai~t-vdG~~~~-~GD~~-----------~~FsiQSisK~f~~~lAL~~ 76 (105)
.-|+.+.+ .+|++.. +|..+ ..++.-|+-|||+|+.||+.
T Consensus 418 ~gA~Vv~Dp~TGeIlAmvgg~~~~~~~~NrA~~a~rqPGSTfKP~~yaaALe~ 470 (751)
T 3fwm_A 418 ETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQ 470 (751)
T ss_dssp EEEEEEEETTTCBEEEEECSSSCSSCSSCHHHHCCEECGGGGHHHHHHHHHTC
T ss_pred eEEEEEEECCCCcEEEEEcCCCCCccchhhHHhCCcCCchhHHHHHHHHHHHc
Confidence 45555555 4788776 55222 34678899999999999997
No 72
>3zyt_A Esterase A, ESTA; hydrolase, enzymatic promiscuity, beta-lactamase; 2.45A {Arthrobacter nitroguajacolicus}
Probab=60.24 E-value=4.8 Score=30.87 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=23.8
Q ss_pred EEEEEecCCcEEe---ec---CCCcccchhhhhHHHHHHHHH
Q psy8039 39 GVSVCTVDGQRYS---IG---KTNIPFTIQSCSKPLTYAIAL 74 (105)
Q Consensus 39 giai~tvdG~~~~---~G---D~~~~FsiQSisK~f~~~lAL 74 (105)
+++| ..+|+.+. .| +.++.|.|-|++|+|+-++++
T Consensus 30 avaV-~~~G~~v~d~~~g~p~~~dt~f~i~S~tK~~ta~~~~ 70 (372)
T 3zyt_A 30 QVAA-YHRGVKVLDLSGGPHIRPDSVTGVFSCSKGMAGLVMA 70 (372)
T ss_dssp EEEE-EETTEEEEEEEESTTCCTTCBEECTTHHHHHHHHHHH
T ss_pred EEEE-EECCEEEEECCCCCCCCCCCEEEeeehHHHHHHHHHH
Confidence 3444 45786432 34 457899999999999955543
No 73
>3pbt_A Penicillin-binding protein 3; PBP3, hydrolase-antibiotic complex; HET: UE1; 1.64A {Pseudomonas aeruginosa} PDB: 3pbn_A* 3pbo_A* 3pbr_A* 3pbs_A* 3pbq_A* 4fsf_A* 3oc2_A 3ocl_A* 3ocn_A*
Probab=57.68 E-value=10 Score=31.37 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=30.4
Q ss_pred CCCCeEEEEEe-cCCcEEee-cC--C------------------CcccchhhhhHHHHHHHHHhh
Q psy8039 34 DPKYWGVSVCT-VDGQRYSI-GK--T------------------NIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 34 dp~~fgiai~t-vdG~~~~~-GD--~------------------~~~FsiQSisK~f~~~lAL~~ 76 (105)
++..-++.+.+ ..|+++.. |- . ...|+.-|+-|||+++.||+.
T Consensus 202 ~~~~ga~Vvmdp~TGeILAm~s~p~ydpn~~~~~~~~~~~Nra~~~~~~PGSTfKp~t~aaALe~ 266 (538)
T 3pbt_A 202 GAKAGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALAS 266 (538)
T ss_dssp TCSEEEEEEEETTTCBEEEEEEESCCCTTCCSSCCGGGGCCHHHHCCBCCGGGGHHHHHHHHHHT
T ss_pred CCceEEEEEEECCCCcEEEEEeCCCCCcccccccCccccccceeeceeCCchhHHHHHHHHHHHc
Confidence 34555566666 47887763 21 1 235889999999999999987
No 74
>2y2m_A PBP1B, penicillin-binding protein 1B; transferase, infection, cell WALL, peptidoglycan, inhibitor; HET: E08; 1.62A {Streptococcus pneumoniae} PDB: 2y2g_A* 2y2h_A* 2y2j_A* 2y2k_A* 2y2l_A* 2y2i_A* 2y2n_A* 2y2o_A* 2y2p_A* 2y2q_A* 2uwy_A* 2xd1_A* 2bg1_A 2xd5_A* 2uwx_A* 2fff_B
Probab=57.46 E-value=21 Score=29.09 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=29.1
Q ss_pred CeEEEEEec-CCcEEe-ecCC-----------CcccchhhhhHHHH-HHHHHhhcC
Q psy8039 37 YWGVSVCTV-DGQRYS-IGKT-----------NIPFTIQSCSKPLT-YAIALEELD 78 (105)
Q Consensus 37 ~fgiai~tv-dG~~~~-~GD~-----------~~~FsiQSisK~f~-~~lAL~~~G 78 (105)
.-|+.++++ +|++.. +|-. +..++.-|.-|||+ |+.||+. |
T Consensus 124 ~~a~Vv~D~~TG~IlA~vgg~~~~~~~~Nra~~~~r~PGStfKp~~~yaaALe~-G 178 (494)
T 2y2m_A 124 EVGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQ-G 178 (494)
T ss_dssp EEEEEEEETTTCBEEEEECCSCTTTCCCCTTTTCCBCCGGGGHHHHTHHHHHHT-T
T ss_pred eEEEEEEECCCCeEEEEEECCCcccccccceeecccCCcchhHHHHHHHHHHHC-C
Confidence 455555554 788776 3422 24578889999996 9999997 5
No 75
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell DIV cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Probab=56.34 E-value=16 Score=30.13 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=17.7
Q ss_pred ccchhhhhHHHHHHHHHhh
Q psy8039 58 PFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 58 ~FsiQSisK~f~~~lAL~~ 76 (105)
.|+.-|+-|||+++.||+.
T Consensus 266 ~~~PGStfKp~t~aaaLe~ 284 (542)
T 3equ_A 266 MIEPGSAIKPFVIAKALDA 284 (542)
T ss_dssp CBCCGGGGHHHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHHHc
Confidence 6889999999999999987
No 76
>3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine carboxylation, antibiotic resistance; HET: KCX DRW; 1.40A {Escherichia coli} SCOP: e.3.1.1 PDB: 1m6k_A*
Probab=52.58 E-value=11 Score=28.13 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=25.4
Q ss_pred CCcEEe---ecCCCcccchhhhhHHHHHHHHHhhcC
Q psy8039 46 DGQRYS---IGKTNIPFTIQSCSKPLTYAIALEELD 78 (105)
Q Consensus 46 dG~~~~---~GD~~~~FsiQSisK~f~~~lAL~~~G 78 (105)
.|+++. .+.+...|+--|+-|||+++.||+. |
T Consensus 26 tg~ila~~n~~ra~~~y~PGSTFK~~ta~aaLe~-G 60 (251)
T 3isg_A 26 TNAEIAQFNKAKCATQMAPDSTFKIALSLMAFDA-E 60 (251)
T ss_dssp TCCEEEEECHHHHTCCBCCGGGHHHHHHHHHHHT-T
T ss_pred CCCEEEEEChHhhCCccCCcHHHHHHHHHHHHHC-C
Confidence 455443 3566788999999999999999986 5
No 77
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=51.66 E-value=9.6 Score=30.59 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=28.5
Q ss_pred ccCCcchhhhccCCCCeEEEEEecCCcEEee
Q psy8039 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSI 52 (105)
Q Consensus 22 ~vA~YIP~La~~dp~~fgiai~tvdG~~~~~ 52 (105)
++-+||=-|+..+|..|||..++.||++++.
T Consensus 265 kpGsYIfR~ScTrlGqwAIgyV~~~~~I~qt 295 (329)
T 3bux_B 265 KPGSYIFRLSCTRLGQWAIGYVTADGNILQT 295 (329)
T ss_dssp STTEEEEEECSSSTTSEEEEEECTTSCEEEE
T ss_pred CCCcEEEEeccCccCceEEEEECCCCceeee
Confidence 5789999999999999999999999998874
No 78
>3ue3_A Septum formation, penicillin binding protein 3, peptidoglycan synthetase; transpeptidase, transferase; 2.30A {Acinetobacter}
Probab=50.08 E-value=16 Score=30.31 Aligned_cols=43 Identities=26% Similarity=0.216 Sum_probs=30.1
Q ss_pred CCCCeEEEEEec-CCcEEeecC---C-------------------CcccchhhhhHHHHHHHHHhh
Q psy8039 34 DPKYWGVSVCTV-DGQRYSIGK---T-------------------NIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 34 dp~~fgiai~tv-dG~~~~~GD---~-------------------~~~FsiQSisK~f~~~lAL~~ 76 (105)
++..-++.+.++ .|+++..-. . ...|+.-|+-|||+++.||+.
T Consensus 229 ~~~~ga~Vvmdp~TGeILAm~s~p~ydpn~~~~~~~~~p~~Nra~~~~y~PGStfKp~t~aaALe~ 294 (554)
T 3ue3_A 229 NARSATAIAVDVKTGEILAMTSWPSYNPNDKGGLSNKDAMRNRGAIDMFEPGSTMKPFTVAAALES 294 (554)
T ss_dssp TCSEEEEEEEETTTCBEEEEEEESCCCTTCCSSCCHHHHSSCHHHHCCBCCGGGGHHHHHHHHHHT
T ss_pred CCceEEEEEEECCCCeEEEEEeCCCCCcccccccccccccccccccCCcCCcHHHHHHHHHHHHHc
Confidence 345555666664 788776421 0 125789999999999999997
No 79
>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase; HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A* 3udx_A* 3ue0_A* 3ue1_A*
Probab=49.98 E-value=26 Score=30.33 Aligned_cols=39 Identities=31% Similarity=0.248 Sum_probs=27.3
Q ss_pred eEEEEEe-cCCcEEe-ecCCC-----------cccchhhhhHHHHHHHHHhh
Q psy8039 38 WGVSVCT-VDGQRYS-IGKTN-----------IPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 38 fgiai~t-vdG~~~~-~GD~~-----------~~FsiQSisK~f~~~lAL~~ 76 (105)
-++.+.+ .+|++.. +|-.+ ..++.-|+-|||+|+.||+.
T Consensus 388 ga~Vv~D~~TG~IlAmvg~~~~~~~~~NrA~~~~~~PGSTfKp~~~aaALe~ 439 (731)
T 3udf_A 388 GQLIAINPNDGSIEAIVGGYNFYQSKFNRALQGWRQPGSTIKPFLYALALER 439 (731)
T ss_dssp EEEEEECTTTCBEEEEECSSCTTTCCCCHHHHCCBCCGGGGHHHHHHHHHHT
T ss_pred eeEEEEeCCCCcEEEEEeCCCCCcchhhHHHhCccCChHHHHHHHHHHHHHc
Confidence 3444444 4788776 34222 35788899999999999996
No 80
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Probab=49.90 E-value=19 Score=30.19 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=17.7
Q ss_pred cccchhhhhHHHHHHHHHhh
Q psy8039 57 IPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 57 ~~FsiQSisK~f~~~lAL~~ 76 (105)
..|+--|+-|||+++.||+.
T Consensus 283 ~~~~PGStfKp~t~aaALe~ 302 (702)
T 1qme_A 283 SNYEPGSTMKVMMLAAAIDN 302 (702)
T ss_dssp CCBCCGGGGHHHHHHHHHHT
T ss_pred cccCCchhHHHHHHHHHHHc
Confidence 35788899999999999997
No 81
>3hbr_A OXA-48; class D beta-lactamase, antibiotic, dimer, hydrolase; HET: KCX; 1.90A {Klebsiella pneumoniae}
Probab=48.01 E-value=26 Score=26.38 Aligned_cols=38 Identities=24% Similarity=0.150 Sum_probs=26.4
Q ss_pred EEEEEe-cCCcEEeec--CCCcccchhhhhHHHHHHHHHhh
Q psy8039 39 GVSVCT-VDGQRYSIG--KTNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 39 giai~t-vdG~~~~~G--D~~~~FsiQSisK~f~~~lAL~~ 76 (105)
++.+.+ .+|+++..- .+...|+-.|+-|||+++.||+.
T Consensus 43 ~~V~~d~~tG~il~~n~nra~~~y~PGSTFK~~ta~aaLe~ 83 (265)
T 3hbr_A 43 VVVLWNENKQQGFTNNLKRANQAFLPASTFKIPNSLIALDL 83 (265)
T ss_dssp EEEEEETTTTEEEESCHHHHTCEECCGGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCEEEECchhccCCcCCccHHHHHHHHHHHHc
Confidence 333344 456665431 13457999999999999999997
No 82
>3g4p_A Beta-lactamase OXA-24; B-lactamases, enzyme mechanism, carbapenem, resistance, HYDR; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A* 3mbz_A* 3pae_A* 3pag_A*
Probab=47.93 E-value=14 Score=27.43 Aligned_cols=32 Identities=25% Similarity=0.187 Sum_probs=23.3
Q ss_pred cCCcEEeecC--CCcccchhhhhHHHHHHHHHhh
Q psy8039 45 VDGQRYSIGK--TNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 45 vdG~~~~~GD--~~~~FsiQSisK~f~~~lAL~~ 76 (105)
..|+++..+- +-..|+.-|+-|||+++.||+.
T Consensus 30 ~tG~ila~~~NrA~~~~~PGSTfK~~~~~aALe~ 63 (244)
T 3g4p_A 30 KNLSTYGNALARANKEYVPASTFKMLNALIGLEN 63 (244)
T ss_dssp TEEEEEESCGGGGGCCBCCGGGHHHHHHHHHHHT
T ss_pred CCCCEEEEccccccCCcCChHHHHHHHHHHHHHC
Confidence 4566665321 1137889999999999999997
No 83
>2v2f_F Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc6_B* 2zc5_B* 2c6w_B 2c5w_B*
Probab=43.36 E-value=14 Score=28.74 Aligned_cols=40 Identities=28% Similarity=0.305 Sum_probs=28.3
Q ss_pred CeEEEEEe-cCCcEEee-cCC--------------CcccchhhhhHHHH-HHHHHhh
Q psy8039 37 YWGVSVCT-VDGQRYSI-GKT--------------NIPFTIQSCSKPLT-YAIALEE 76 (105)
Q Consensus 37 ~fgiai~t-vdG~~~~~-GD~--------------~~~FsiQSisK~f~-~~lAL~~ 76 (105)
.-++.+.+ .+|+++.. |-. ...|+.-|+-|||+ |+.||+.
T Consensus 65 ~ga~Vv~d~~TG~IlAm~~~~~~~~n~~~~~Nra~~~~~~PGStfKp~~~yaaaLe~ 121 (390)
T 2v2f_F 65 QVASTVVDVSNGKVIAQLGARHQASNVSFGTNQAVETNRDWGSAMKPITDYAPAIEY 121 (390)
T ss_dssp EEEEEEEETTTTEEEEEECCCC-----CCCCCTTTCCCSCCGGGGHHHHTHHHHHHT
T ss_pred eEEEEEEECCCCcEEEEEECCCCCCCccccccHhhcCCCCCcccHHHHHHHHHHHHc
Confidence 34555555 47887774 321 23588899999999 8999986
No 84
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=37.43 E-value=20 Score=28.65 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=28.8
Q ss_pred ccCCcchhhhccCCCCeEEEEEecCCcEEe-ec
Q psy8039 22 QVADYIPQLARADPKYWGVSVCTVDGQRYS-IG 53 (105)
Q Consensus 22 ~vA~YIP~La~~dp~~fgiai~tvdG~~~~-~G 53 (105)
+.-+||=-|+..++..|||..++.||++++ +.
T Consensus 250 KpGsYIfR~ScTrlGqwAIgYV~s~g~I~qtip 282 (323)
T 3op0_A 250 KPGSYIFRPSCTRLGQWAIGYVSSDGSILQTIP 282 (323)
T ss_dssp STTEEEEEECSSSTTCEEEEEECTTSCEEEECC
T ss_pred CCCcEEEEeccCccCceEEEEEcCCCceeecCC
Confidence 578999999999999999999999999775 44
No 85
>3un7_A PBPA, penicillin-binding protein A; transpeptidase, peptidoglycan, B lactam, transferase; 2.00A {Mycobacterium tuberculosis} PDB: 3upn_A* 3upo_A* 3upp_A* 3lo7_A
Probab=36.68 E-value=21 Score=28.57 Aligned_cols=20 Identities=30% Similarity=0.180 Sum_probs=17.8
Q ss_pred cccchhhhhHHHHHHHHHhh
Q psy8039 57 IPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 57 ~~FsiQSisK~f~~~lAL~~ 76 (105)
..|+--|+-|||+++.||+.
T Consensus 187 ~~y~PGStfKp~t~aaaLe~ 206 (462)
T 3un7_A 187 ETYPPGSTFKVITTAAALAA 206 (462)
T ss_dssp CCBCCGGGGHHHHHHHHHHT
T ss_pred CCcCCcccchHHHHHHHHHh
Confidence 35888999999999999986
No 86
>1k38_A Penicillinase, beta-lactamase OXA-2; serine beta-lactamase, hydrolase, antibiotic resistance, carbamylated lysine; HET: KCX; 1.50A {Salmonella typhimurium} SCOP: e.3.1.1 PDB: 3if6_A*
Probab=28.57 E-value=63 Score=23.79 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=24.7
Q ss_pred ecCC--cEEeec--CCCcccchhhhhHHHHHHHHHhh
Q psy8039 44 TVDG--QRYSIG--KTNIPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 44 tvdG--~~~~~G--D~~~~FsiQSisK~f~~~lAL~~ 76 (105)
-.+| +++..- .+...|+--|+-|||+++.||+.
T Consensus 28 p~tG~~~IlA~~~nr~~~~y~PGSTFK~~ta~aaLe~ 64 (254)
T 1k38_A 28 ERQADRAMLVFDPVRSKKRYSPASTFKIPHTLFALDA 64 (254)
T ss_dssp CSSSSCCCEEESHHHHTCCBCCGGGGHHHHHHHHHHH
T ss_pred CCCCCeeEEEECchhhCCccCCchHHHHHHHHHHHHc
Confidence 3467 666531 13456999999999999999987
No 87
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis multifunctional enzyme, cell WALL, peptidoglycan, gamma lactam antibiotics; HET: PL7; 2.4A {Streptococcus pneumoniae} PDB: 2jci_A* 2je5_A*
Probab=26.54 E-value=91 Score=26.62 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=28.7
Q ss_pred CeEEEEEe-cCCcEEe-ecCC-----------CcccchhhhhHHHH-HHHHHhhcC
Q psy8039 37 YWGVSVCT-VDGQRYS-IGKT-----------NIPFTIQSCSKPLT-YAIALEELD 78 (105)
Q Consensus 37 ~fgiai~t-vdG~~~~-~GD~-----------~~~FsiQSisK~f~-~~lAL~~~G 78 (105)
.-|+.+++ .+|++.. +|-. +..++.-|.-|||+ |+.||+. |
T Consensus 350 ~~a~Vv~Dp~TG~IlAmvgg~~~~~~~~NrA~~~~rqPGStfKp~~~yaaALe~-G 404 (720)
T 2jch_A 350 EVGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQ-G 404 (720)
T ss_dssp EEEEEEEETTTCBEEEEECCSCTTTCCCCTTTTCCBCCGGGGHHHHTHHHHHHT-T
T ss_pred ceEEEEEECCCCeEEEEEeCCCCCccccchhhhCCCCCcchhhHHHHHHHHHHc-C
Confidence 44555555 4788776 3422 23578889999996 9999997 5
No 88
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transme antibiotic resistance, cell shape, peptidoglycan; 2.18A {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Probab=26.25 E-value=34 Score=28.75 Aligned_cols=20 Identities=25% Similarity=0.130 Sum_probs=18.1
Q ss_pred cccchhhhhHHHHHHHHHhh
Q psy8039 57 IPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 57 ~~FsiQSisK~f~~~lAL~~ 76 (105)
..|+.-|+-|||+++.||+.
T Consensus 380 ~~~~PGStfKp~t~aaaLe~ 399 (680)
T 2wad_A 380 NVFVPGSVVKAATISSGWEN 399 (680)
T ss_dssp CCBCCGGGGHHHHHHHHHHT
T ss_pred CcCCCccHHHHHHHHHHHHc
Confidence 46889999999999999987
No 89
>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwu_A* 1mwr_A 1mws_A* 1mwt_A*
Probab=24.72 E-value=42 Score=28.20 Aligned_cols=20 Identities=35% Similarity=0.272 Sum_probs=17.9
Q ss_pred cccchhhhhHHHHHHHHHhh
Q psy8039 57 IPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 57 ~~FsiQSisK~f~~~lAL~~ 76 (105)
..|+.-|+-|||+++.||+.
T Consensus 375 ~~~~PGSTfKp~t~aaaLe~ 394 (646)
T 1vqq_A 375 ITTSPGSTQKILTAMIGLNN 394 (646)
T ss_dssp SCBCCGGGHHHHHHHHHHHT
T ss_pred cccCCchHHHHHHHHHHHHc
Confidence 45888999999999999986
No 90
>3vsk_A Penicillin-binding protein 3; penicillin-binding domain, transpeptidase; 2.30A {Staphylococcus aureus} PDB: 3vsl_A*
Probab=23.41 E-value=39 Score=27.98 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=17.5
Q ss_pred cccchhhhhHHHHHHHHHhh
Q psy8039 57 IPFTIQSCSKPLTYAIALEE 76 (105)
Q Consensus 57 ~~FsiQSisK~f~~~lAL~~ 76 (105)
..|+.-|+-|||+++.||+.
T Consensus 341 ~~~~PGStfK~~t~~aaLe~ 360 (646)
T 3vsk_A 341 SQFAVGSSVKGGTLLAGYQN 360 (646)
T ss_dssp CCBCCCGGGHHHHHHHHHHT
T ss_pred cccccccchhhhhHHHHHhh
Confidence 34778899999999999986
No 91
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=20.53 E-value=65 Score=21.39 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=27.7
Q ss_pred hccCCCCeEEEEEe----------cCCcEEeecCCCcccchhhhhHH
Q psy8039 31 ARADPKYWGVSVCT----------VDGQRYSIGKTNIPFTIQSCSKP 67 (105)
Q Consensus 31 a~~dp~~fgiai~t----------vdG~~~~~GD~~~~FsiQSisK~ 67 (105)
.+.+|+.|.++.+. ..++..-++|.+.++-+|...++
T Consensus 50 ~~~~~~~Y~LveV~~~~~~~~~~~~g~~ErvL~~~E~Pl~i~~~w~~ 96 (116)
T 1wxa_A 50 EKENPKDYCIARVMLPPGAQHSDERGAKEIILDDDECPLQIFREWPS 96 (116)
T ss_dssp SSSCTTTEEEEEEECCSSCCSSSSTTCEEECCCSSCCHHHHHHTCCG
T ss_pred CCCCchheEEEEEECccccccccCCCceEEECCCCCCHHHHHHhccc
Confidence 34688999999885 33567778999999887776554
Done!