RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8039
(105 letters)
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase;
2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A
3ih9_A 3iha_A* 3ihb_A 2dfw_A
Length = 456
Score = 121 bits (305), Expect = 2e-34
Identities = 38/84 (45%), Positives = 50/84 (59%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
+ A YIP LA ADP +G+++ T G+ + G ++ FTIQS SKP TYA AL +
Sbjct: 23 ETAQYIPVLAEADPDRFGIALATPTGRLHCAGDADVEFTIQSASKPFTYAAALVDRGFAA 82
Query: 82 VHKYVGQEPSGRNFNELILDHNSE 105
V + VG PSG FNEL L+ S
Sbjct: 83 VDRQVGLNPSGEAFNELSLEAESH 106
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI,
protein structure initiat midwest center for structural
genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Length = 310
Score = 116 bits (293), Expect = 1e-33
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
Q ADYIP LA + V++ T DG YS G ++ F ++S SK T A+ALE++ +
Sbjct: 25 QNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQA 84
Query: 82 VHKYVGQEPSGRNFNELILD 101
V +G +P+G FN +I
Sbjct: 85 VQDKIGADPTGLPFNSVIAL 104
>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus
subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* 3agf_A
Length = 330
Score = 117 bits (293), Expect = 2e-33
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
Q A+YIP L + + G+ V DG G N+ FT+QS SK +++ A
Sbjct: 36 QSANYIPALGKVNDSQLGICVLEPDGTMIHAGDWNVSFTMQSISKVISFIAACMSRGIPY 95
Query: 82 VHKYVGQEPSGRNFNELILDHNSE 105
V V EP+G FN +I ++
Sbjct: 96 VLDRVDVEPTGDAFNSIIRLEINK 119
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein
structure initiative, riken structural
genomics/proteomics initiative, RSGI; 2.07A {Geobacillus
kaustophilus}
Length = 308
Score = 115 bits (289), Expect = 5e-33
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
+VADYIP L +A+P +++ T D + S G + T+QS SK + A+ L + ++E
Sbjct: 24 KVADYIPALGKANPNELSIAIYTPDDEVVSAGDVTVKVTLQSISKIIALALVLIDRGEDE 83
Query: 82 VHKYVGQEPSGRNFNELILDHN 103
V VG EP+ F+ +
Sbjct: 84 VFHKVGMEPTDYPFHSIAKLEE 105
>3voy_A Glutaminase kidney isoform, mitochondrial; hydrolase; 2.20A {Homo
sapiens} PDB: 3czd_A 3voz_A* 3vp0_A* 3vp1_A* 3vp2_A
3vp3_A 3vp4_A
Length = 315
Score = 115 bits (288), Expect = 8e-33
Identities = 52/82 (63%), Positives = 64/82 (78%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
+VADYIPQLA+ P WGVSVCTVDGQR+S G T +PF +QSC KPL YAIA+ +L E
Sbjct: 27 KVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLGTEY 86
Query: 82 VHKYVGQEPSGRNFNELILDHN 103
VH+YVG+EPSG FN+L L+ +
Sbjct: 87 VHRYVGKEPSGLRFNKLFLNED 108
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 110 bits (276), Expect = 4e-30
Identities = 52/82 (63%), Positives = 64/82 (78%)
Query: 22 QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
+VADYIPQLA+ P WGVSVCTVDGQR+S G T +PF +QSC KPL YAIA+ +L E
Sbjct: 175 KVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLGTEY 234
Query: 82 VHKYVGQEPSGRNFNELILDHN 103
VH+YVG+EPSG FN+L L+ +
Sbjct: 235 VHRYVGKEPSGLRFNKLFLNED 256
>3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 2.20A
{Mycobacterium bovis}
Length = 280
Score = 28.1 bits (63), Expect = 0.46
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 20 LRQVADY-IPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIAL 74
L + + +P A +V G + G T F + S +KPL A A
Sbjct: 4 LEVLGGWPVPAAA--------AAVIGPAGVLATHGDTARVFALASVTKPLV-ARAA 50
>1ci9_A ESTB, protein (carboxylesterase); hydrolase, caboxylesterase; HET:
DFP; 1.80A {Burkholderia gladioli} SCOP: e.3.1.1 PDB:
1ci8_A*
Length = 392
Score = 26.6 bits (59), Expect = 1.7
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 10/36 (27%)
Query: 59 FTIQSCSKPLTYAIAL----EE----LDQEEVHKYV 86
F + S +KP+ A+A+ LD V +++
Sbjct: 71 FRLASVTKPIV-ALAVLRLVARGELALD-APVTRWL 104
>3hlc_A Transesterase, LOVD; alpha/beta hydrolase fold, transferase; HET:
PG4; 2.00A {Aspergillus terreus} PDB: 3hld_A* 3hlf_A*
3hle_A* 3hlg_A* 3hlb_A 3hl9_A
Length = 432
Score = 26.3 bits (58), Expect = 2.3
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 54 KTNIPFTIQSCSKPLTYAIAL---EE----LDQEEVHKYV 86
+ + P + S +K LT + L E LD E V + +
Sbjct: 86 QVDTPCRLASATKLLTTIMVLQCMERGLVDLD-ETVDRLL 124
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A
{Helicobacter pylori} PDB: 3juj_A*
Length = 281
Score = 25.9 bits (58), Expect = 2.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 72 IALEELDQEEVHKY 85
+A+EE+ EEV KY
Sbjct: 157 VAIEEVALEEVSKY 170
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU
pyrophosphorylase, nucleotidyltransferase; HET: G1P;
2.65A {Sphingomonas elodea}
Length = 297
Score = 25.5 bits (57), Expect = 3.7
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 72 IALEELDQEEVHKY 85
I EE+ ++ H+Y
Sbjct: 166 ICAEEVPDDQTHRY 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 4.4
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 20/77 (25%)
Query: 19 FLRQVADYIPQLARADPKYW-GVSVCTVDGQRYSIGKTNIPFTI-QSCSK-----PLTYA 71
F V I L ++ GV + T++P +I + + P +
Sbjct: 292 FFVSVRKAITVL------FFIGVR-----CYE-AYPNTSLPPSILEDSLENNEGVP-SPM 338
Query: 72 IALEELDQEEVHKYVGQ 88
+++ L QE+V YV +
Sbjct: 339 LSISNLTQEQVQDYVNK 355
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis,
transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A
2h06_A 2h07_A 2h08_A
Length = 326
Score = 25.2 bits (56), Expect = 4.7
Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 10/50 (20%)
Query: 28 PQLARADPKYWGVSVCTVDGQRYSIGKTNIP----------FTIQSCSKP 67
L++ G+ + V +++S +T + + +QS
Sbjct: 13 QDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGE 62
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase,
nucleotidyltransferase, metabolism; HET: GUD; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 323
Score = 25.2 bits (56), Expect = 5.1
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 72 IALEELDQEEVHKY 85
+ E+ + +V KY
Sbjct: 166 LCAVEVSEADVSKY 179
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold,
gluconeogenesis, glycolysis, structural genomics; HET:
G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A*
Length = 446
Score = 24.6 bits (54), Expect = 8.3
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 40 VSVCTVD----GQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHKYVGQEPSGRNF 95
+ T D GQ G+ + T+ + P ++ D + Y+ +G+
Sbjct: 301 SANYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDITIEKDSDDLDGLNYL----AGKTI 356
Query: 96 NELI 99
+E+
Sbjct: 357 DEVN 360
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.388
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,562,398
Number of extensions: 79909
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 15
Length of query: 105
Length of database: 6,701,793
Length adjustment: 70
Effective length of query: 35
Effective length of database: 4,747,323
Effective search space: 166156305
Effective search space used: 166156305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)