RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8039
         (105 letters)



>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli
           [TaxId: 562]}
          Length = 309

 Score =  130 bits (329), Expect = 2e-39
 Identities = 31/83 (37%), Positives = 46/83 (55%)

Query: 22  QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
           Q ADYIP LA    +   V++ T DG  YS G ++  F ++S SK  T A+ALE++  + 
Sbjct: 24  QNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQA 83

Query: 82  VHKYVGQEPSGRNFNELILDHNS 104
           V   +G +P+G  FN +I     
Sbjct: 84  VQDKIGADPTGLPFNSVIALELH 106


>d1mkia_ e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus subtilis
           [TaxId: 1423]}
          Length = 328

 Score =  128 bits (324), Expect = 2e-38
 Identities = 27/84 (32%), Positives = 40/84 (47%)

Query: 22  QVADYIPQLARADPKYWGVSVCTVDGQRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEE 81
           Q A+YIP L + +    G+ V   DG     G  N+ FT+QS SK +++  A        
Sbjct: 34  QSANYIPALGKVNDSQLGICVLEPDGTMIHAGDWNVSFTMQSISKVISFIAACMSRGIPY 93

Query: 82  VHKYVGQEPSGRNFNELILDHNSE 105
           V   V  EP+G  FN +I    ++
Sbjct: 94  VLDRVDVEPTGDAFNSIIRLEINK 117


>d1w5da1 e.3.1.3 (A:5-462) Penicillin-binding protein DacC
          {Bacillus subtilis [TaxId: 1423]}
          Length = 458

 Score = 27.2 bits (59), Expect = 0.36
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 14 NKVQLFLRQVADYIPQLARADPKYWGVSVCTVDGQR--YSIGKTNIPFTIQSCSKPLTYA 71
          + +   + ++    P L  A     G++V + +     Y     +      S  K LT A
Sbjct: 1  DALSGQIDKILADHPALEGA---MAGITVRSAETGAVLYEHS-GDTRMRPASSLKLLTAA 56

Query: 72 IALEELD 78
           AL  L 
Sbjct: 57 AALSVLG 63


>d1w79a1 e.3.1.3 (A:1-467) D-alanyl-D-alanine carboxypeptidase Dac
          {Actinomadura sp. [TaxId: 1989]}
          Length = 467

 Score = 26.8 bits (58), Expect = 0.59
 Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 20 LRQVADYIPQLARADPKYWGVSVCTVDGQR--YSIGKTNIPFTIQSCSKPLTYAIALEEL 77
          LR+  D I +    +    GV V         YS           S  K  T A ALE L
Sbjct: 5  LREDIDAILEDPALEGAVSGVVVVDTATGEELYSRD-GGEQLLPASNMKLFTAAAALEVL 63

Query: 78 D 78
           
Sbjct: 64 G 64


>d2ex2a1 e.3.1.3 (A:22-477) DD-carboxypeptidase DacB {Escherichia
          coli [TaxId: 562]}
          Length = 456

 Score = 24.8 bits (53), Expect = 2.5
 Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 8/61 (13%)

Query: 20 LRQVADYIPQLARADPKYWGVSVCTVDGQR--YSIGKTNIPFTIQSCSKPLTYAIALEEL 77
          + +    +P  A        + V  V           +       S  K +T   AL +L
Sbjct: 2  VDEYITQLPAGAN-----LALMVQKVGASAPAIDYH-SQQMALPASTQKVITALAALIQL 55

Query: 78 D 78
           
Sbjct: 56 G 56


>d2v4ja1 d.58.1.5 (A:242-322) DsrA insert domain {Desulfovibrio
          vulgaris [TaxId: 881]}
          Length = 81

 Score = 23.2 bits (50), Expect = 4.6
 Identities = 6/12 (50%), Positives = 6/12 (50%)

Query: 78 DQEEVHKYVGQE 89
          D E V  YV  E
Sbjct: 6  DAEAVKAYVAGE 17


>d1k38a_ e.3.1.1 (A:) Class D beta-lactamase {Salmonella
          typhimurium, OXA-2 [TaxId: 90371]}
          Length = 241

 Score = 24.0 bits (51), Expect = 4.8
 Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 9/49 (18%)

Query: 48 QRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHKYVGQEPSGRNFN 96
          +RYS           S  K      AL+     +  +    +   R F 
Sbjct: 42 KRYSPA---------STFKIPHTLFALDAGAVRDEFQIFRWDGVNRGFA 81


>d1xa1a_ e.3.1.1 (A:) Regulatory protein BlaR1 {Staphylococcus
          aureus [TaxId: 1280]}
          Length = 246

 Score = 23.6 bits (50), Expect = 5.8
 Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 9/50 (18%)

Query: 48 QRYSIGKTNIPFTIQSCSKPLTYAIALEELDQEEVHKYVGQEPSGRNFNE 97
          +RYS           S  K       L+     + +  +        F+ 
Sbjct: 46 KRYSPN---------STYKIYLAMFGLDRHIINDENSRMSWNHKHYPFDA 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0661    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 382,898
Number of extensions: 15475
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 8
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)