Query psy8040
Match_columns 272
No_of_seqs 113 out of 131
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 16:54:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jk9_A SPRY domain-containing 99.8 4.4E-21 1.5E-25 161.0 4.1 102 169-270 11-112 (212)
2 2afj_A Gene rich cluster, C9 g 99.8 7.9E-20 2.7E-24 155.7 8.9 101 169-270 19-119 (226)
3 3emw_A SPRY domain-containing 99.7 3E-19 1E-23 152.9 3.5 102 169-271 22-123 (217)
4 3toj_A SET1/ASH2 histone methy 99.2 1.2E-11 4.1E-16 105.2 4.4 72 188-263 10-81 (213)
5 2yyo_A SPRY domain-containing 98.9 6E-10 2.1E-14 92.1 3.9 67 194-263 3-69 (171)
6 2wl1_A Pyrin, marenostrin; amy 98.4 4.2E-07 1.4E-11 76.7 6.8 67 190-260 14-90 (191)
7 2fbe_A Predicted: similar to R 98.4 4.6E-07 1.6E-11 77.4 6.8 67 190-260 11-87 (201)
8 3kb5_A Tripartite motif-contai 98.2 4E-06 1.4E-10 70.7 7.4 68 189-260 12-90 (193)
9 2vok_A 52 kDa RO protein; poly 98.1 4.9E-06 1.7E-10 70.4 6.1 66 191-260 11-86 (188)
10 3uv9_A TRIM5alpha, tripartite 98.1 6.7E-06 2.3E-10 69.1 6.6 60 192-260 15-74 (186)
11 4b3n_A Maltose-binding peripla 96.8 0.0014 4.8E-08 61.9 5.5 63 190-257 411-491 (602)
12 1lqb_D HIF-1 alpha, hypoxia-in 32.1 11 0.00039 25.1 0.4 13 8-21 17-29 (34)
13 3eds_A MUTT/nudix family prote 22.7 95 0.0033 23.2 4.1 22 31-52 56-77 (153)
No 1
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=99.82 E-value=4.4e-21 Score=161.04 Aligned_cols=102 Identities=67% Similarity=1.214 Sum_probs=94.0
Q ss_pred CCCchhhhhccCCCCCcccccccccCCCCCCCCeEEecCCeeEEEEcccccccchhccccccccceeEEEEEecCCCCcc
Q psy8040 169 QRPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGT 248 (272)
Q Consensus 169 ~~p~RlD~LL~~PP~~~~~q~~waWNp~DrS~NI~LK~ddklTfHRHPVaQSTDaIRGKkGls~G~H~WEI~W~~r~rGT 248 (272)
..|.++|+|++|||.....+..++||++++++++.|++|++++++++|+.+++++|||+.||+.|+|||||+|...+.+|
T Consensus 11 ~~~~~~~~ll~~p~~~~~~~~~~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~~~~ 90 (212)
T 2jk9_A 11 CKPTRLDLLLDMPPVSYDVQLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGT 90 (212)
T ss_dssp CCCCHHHHHHHSCCCCHHHHHHTSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBCSSEEEEEEECCGGGCTT
T ss_pred CCccchhhhccCCCcccccccccccChhhcCCceEEeCCCeEEEEECCCCCccceEEcCCCccCCeEEEEEEEecccCCC
Confidence 67999999999999888889999999999999999999877899999998899999999999999999999999777899
Q ss_pred eEEEeeecCCccccCCCccccc
Q psy8040 249 HAVVGVGTIDAPLHSVGYQIIR 270 (272)
Q Consensus 249 hAMVGVgTkeApLh~~GY~sLl 270 (272)
+++|||+++.++++..|+..++
T Consensus 91 ~w~vGV~~~~~~r~~~g~~~~~ 112 (212)
T 2jk9_A 91 HAVVGVATADAPLHSVGYTTLV 112 (212)
T ss_dssp CCEEEEECTTSCCEEESSCCCT
T ss_pred cEEEEEEcCCccccccCccccc
Confidence 9999999999999766666554
No 2
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=99.80 E-value=7.9e-20 Score=155.73 Aligned_cols=101 Identities=49% Similarity=0.844 Sum_probs=94.0
Q ss_pred CCCchhhhhccCCCCCcccccccccCCCCCCCCeEEecCCeeEEEEcccccccchhccccccccceeEEEEEecCCCCcc
Q psy8040 169 QRPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGT 248 (272)
Q Consensus 169 ~~p~RlD~LL~~PP~~~~~q~~waWNp~DrS~NI~LK~ddklTfHRHPVaQSTDaIRGKkGls~G~H~WEI~W~~r~rGT 248 (272)
..|.|+|+|++|||..+..+..++||+++.++++.|++|+ ++|+++|+.+++++|||+.||+.|+|||||+|.....||
T Consensus 19 ~~~~~~~~l~~~p~~~~~~~~~~tLDp~ta~~~L~lSed~-~~v~~~~~~~~~~~Vlg~~~f~sGrhYWEV~V~~~~~~~ 97 (226)
T 2afj_A 19 SPPEGLEELLSAPPPDLVAQRHHGWNPKDCSENIDVKEGG-LCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGT 97 (226)
T ss_dssp CCCSSSHHHHSSCCTTSSHHHHHSSCCSSSCCSSEEETTT-TEEECSSCTTTSSSEEECCCCCCSEEEEEEECCCCSSSC
T ss_pred CCccccceeccCCCCccccccccEEccccCCCCEEEeCCC-EEEEECCCCCCcCeEEECCCccCCEEEEEEEEeccCCCC
Confidence 7899999999999999999999999999999999999986 799999999999999999999999999999999777899
Q ss_pred eEEEeeecCCccccCCCccccc
Q psy8040 249 HAVVGVGTIDAPLHSVGYQIIR 270 (272)
Q Consensus 249 hAMVGVgTkeApLh~~GY~sLl 270 (272)
..+|||+++.++++..|+..++
T Consensus 98 ~w~vGV~~~s~~~~r~~~~~~~ 119 (226)
T 2afj_A 98 HAVVGVATALAPLQADHYAALL 119 (226)
T ss_dssp CCEEEEEESSCCCSSCSSSCCC
T ss_pred CEEEEecCCccccccccccccc
Confidence 9999999999998877776655
No 3
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=99.75 E-value=3e-19 Score=152.89 Aligned_cols=102 Identities=48% Similarity=0.809 Sum_probs=94.9
Q ss_pred CCCchhhhhccCCCCCcccccccccCCCCCCCCeEEecCCeeEEEEcccccccchhccccccccceeEEEEEecCCCCcc
Q psy8040 169 QRPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGT 248 (272)
Q Consensus 169 ~~p~RlD~LL~~PP~~~~~q~~waWNp~DrS~NI~LK~ddklTfHRHPVaQSTDaIRGKkGls~G~H~WEI~W~~r~rGT 248 (272)
..|.||+.||+|||.....+..++|||+++++++.|++| +.+|+++|+.|++++|||+.||+.|+|||||+|...+.|+
T Consensus 22 ~~~~~L~~~l~~~~~~~~~~~~~tlDp~ta~~~L~lSed-~~~v~~~~~~~~~~~Vl~~~~~~sGrhYWEV~v~~~~~g~ 100 (217)
T 3emw_A 22 SMPEGLEELLSAPPPDLGAQRRHGWNPKDCSENIEVKEG-GLYFERRPVAQSTDGARGKRGYSRGLHAWEISWPLEQRGT 100 (217)
T ss_dssp GCCTTHHHHHHSCCCCHHHHHHTSEEEEEECTTEEEEGG-GTEEEECCBSSCEEEEEESCCBSSSEEEEEEECCGGGCTT
T ss_pred hcCHHHHHhhcCCCcccccccceEeCcccCCCCEEECCC-CeEEEECccCCCCCEEEeCCCccCccEEEEEEEcccCCCC
Confidence 568899999999999999999999999999999999997 4799999999999999999999999999999999878899
Q ss_pred eEEEeeecCCccccCCCcccccc
Q psy8040 249 HAVVGVGTIDAPLHSVGYQIIRF 271 (272)
Q Consensus 249 hAMVGVgTkeApLh~~GY~sLl~ 271 (272)
...|||+++.++++..|+..+++
T Consensus 101 ~~~vGv~~~~~~r~~~g~~~~lG 123 (217)
T 3emw_A 101 HAVVGVATALAPLQTDHYAALLG 123 (217)
T ss_dssp CCEEEEECTTSCCEESSSCCCTT
T ss_pred ceeEEEEcCccccccCCcccccc
Confidence 99999999999998888877665
No 4
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=99.17 E-value=1.2e-11 Score=105.17 Aligned_cols=72 Identities=21% Similarity=0.225 Sum_probs=65.0
Q ss_pred ccccccCCCCCCCCeEEecCCeeEEEEcccccccchhccccccccceeEEEEEecCCCCcceEEEeeecCCccccC
Q psy8040 188 QVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHS 263 (272)
Q Consensus 188 q~~waWNp~DrS~NI~LK~ddklTfHRHPVaQSTDaIRGKkGls~G~H~WEI~W~~r~rGThAMVGVgTkeApLh~ 263 (272)
...+.||++|+++++.|++|+ ++++. .++..+|||+.|+..|+|||||++...+.++++.||++|+.+++++
T Consensus 10 ~~~v~ld~~d~~~~l~ls~d~-l~v~~---~~~~~~vra~~~v~~G~~YfEV~v~~~~~~~~~~iG~a~~~~~~~~ 81 (213)
T 3toj_A 10 YERVLLALHDRAPQLKISDDR-LTVVG---EKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQA 81 (213)
T ss_dssp ECCCCEEEEEECTTSEECTTS-SEEEC---CSSCEEEEESCCBSSEEEEEEEEEEECCTTCEEEEEEECTTSCTTS
T ss_pred CCeEEechhhCCCCEEEcCCC-cEEEe---CCceeEEEeCCCccCCeEEEEEEEeecCCCceEEEEeccCCccccc
Confidence 457999999999999999875 89987 4578899999999999999999999877799999999999999874
No 5
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=98.91 E-value=6e-10 Score=92.06 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=56.6
Q ss_pred CCCCCCCCeEEecCCeeEEEEcccccccchhccccccccceeEEEEEecCCCCcceEEEeeecCCccccC
Q psy8040 194 NPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHS 263 (272)
Q Consensus 194 Np~DrS~NI~LK~ddklTfHRHPVaQSTDaIRGKkGls~G~H~WEI~W~~r~rGThAMVGVgTkeApLh~ 263 (272)
+++||+.+|.+.++ ++++|.+ .+++++||++.|+.+|.|||||++.....++++.||++|+.++|+.
T Consensus 3 s~~dr~~~l~~~~d-~l~~~~~--~~~~~~vra~~p~~~g~~YfEv~i~~~~~~~~~~IG~a~~~~~~~~ 69 (171)
T 2yyo_A 3 SGSSGFKHILVDGD-TLSYHGN--SGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDH 69 (171)
T ss_dssp ---CEEESEEEETT-EEEECCC--SSCCEEEECSSCCCSSSCEEEEEEEEETTTCCCEEEEECTTCCTTS
T ss_pred CcccCcceEEEcCC-EEEEeCC--CCceeEEEECCCCCCCCEEEEEEEEECCCCcEEEEEecCCCCCCcc
Confidence 45899999988654 6887665 3689999999999999999999999878889999999999999864
No 6
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=98.40 E-value=4.2e-07 Score=76.68 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=54.6
Q ss_pred ccccCCCCCCCCeEEecCCeeEEEEccccc----------ccchhccccccccceeEEEEEecCCCCcceEEEeeecCCc
Q psy8040 190 KHAWNPEDRSLNIFVKDDDKLTFHRHPVAQ----------STDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDA 259 (272)
Q Consensus 190 ~waWNp~DrS~NI~LK~ddklTfHRHPVaQ----------STDaIRGKkGls~G~H~WEI~W~~r~rGThAMVGVgTkeA 259 (272)
..++||+-..+++.|++|+ .++.+....| ...+|-|+.+|+.|+|||||+|.. .+...|||+.+.+
T Consensus 14 ~~tLDp~TA~~~L~lSed~-~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrHYWEVev~~---~~~w~vGV~~~s~ 89 (191)
T 2wl1_A 14 NVILDAETAYPNLIFSDDL-KSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLSGRRYWEVEVGD---KTAWILGACKTSI 89 (191)
T ss_dssp CCEECTTTSCTTEEECTTS-CEEEECCTTCCCCCCTTSCSSSCCEEEECCBCSSEEEEEEECTT---CSCEEEEEEETTC
T ss_pred eeEECCccCCCceEECCCC-cEEEECCcCCCCCCCcccccccccccCcccccCCCEEEEEEeCC---CCEEEEEEeeCCc
Confidence 6788999999999999886 5676654333 245899999999999999999984 5788999998765
Q ss_pred c
Q psy8040 260 P 260 (272)
Q Consensus 260 p 260 (272)
+
T Consensus 90 ~ 90 (191)
T 2wl1_A 90 S 90 (191)
T ss_dssp C
T ss_pred C
Confidence 4
No 7
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=98.39 E-value=4.6e-07 Score=77.45 Aligned_cols=67 Identities=22% Similarity=0.378 Sum_probs=54.6
Q ss_pred ccccCCCCCCCCeEEecCCeeEEEEccccc----------ccchhccccccccceeEEEEEecCCCCcceEEEeeecCCc
Q psy8040 190 KHAWNPEDRSLNIFVKDDDKLTFHRHPVAQ----------STDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDA 259 (272)
Q Consensus 190 ~waWNp~DrS~NI~LK~ddklTfHRHPVaQ----------STDaIRGKkGls~G~H~WEI~W~~r~rGThAMVGVgTkeA 259 (272)
..++|++-..+++.|++|+ .++.+....| ...+|-|+.+|+.|+|||||+|.. .+...|||+.+.+
T Consensus 11 ~~tLDp~TA~~~L~lSed~-~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~---~~~w~vGV~~~si 86 (201)
T 2fbe_A 11 DMTFDVDTANNYLIISEDL-RSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGT---SQVWDVGVCKESV 86 (201)
T ss_dssp CCCEETTTCCTTEEECTTS-SEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECTT---CSEEEEEEEETTS
T ss_pred eEEECcccCCCceEECCCC-cEEEECCccCCCCCCccceeeccceecCccccCCceEEEEEeCC---CCEEEEEEeeCcc
Confidence 6788999999999999886 5676654433 246899999999999999999984 4778999998765
Q ss_pred c
Q psy8040 260 P 260 (272)
Q Consensus 260 p 260 (272)
+
T Consensus 87 ~ 87 (201)
T 2fbe_A 87 N 87 (201)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=98.16 E-value=4e-06 Score=70.70 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=53.5
Q ss_pred cccccCCCCCCCCeEEecCCeeEEEEcccc-c----------ccchhccccccccceeEEEEEecCCCCcceEEEeeecC
Q psy8040 189 VKHAWNPEDRSLNIFVKDDDKLTFHRHPVA-Q----------STDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTI 257 (272)
Q Consensus 189 ~~waWNp~DrS~NI~LK~ddklTfHRHPVa-Q----------STDaIRGKkGls~G~H~WEI~W~~r~rGThAMVGVgTk 257 (272)
.+.+.||+-..+++.|++|+ .++.+-... | ...+|-|+.+|+.|+|||||+|.. .+.-.|||+.+
T Consensus 12 ~~vtLDp~TA~~~L~lSed~-~~v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrhYWEVev~~---~~~W~lGV~~~ 87 (193)
T 3kb5_A 12 EELTFDPSSAHPSLVVSSSG-RRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLSEGEHYWEVDVGD---KPRWALGVIAA 87 (193)
T ss_dssp CCCCBCTTTSCTTEEEETTT-TEEEECCSCCCCCCSCTTSCSSSCEEEBSCCBCSSEEEEEEECTT---CSSEEEEEEET
T ss_pred ccEEECCCCCCCCEEECCCC-CEEEECCcCCCCCCCCccccccccEEccCCcccCCCEEEEEEeCc---CceEEEEEeeC
Confidence 35788999999999999886 466654433 2 235799999999999999999984 46789999987
Q ss_pred Ccc
Q psy8040 258 DAP 260 (272)
Q Consensus 258 eAp 260 (272)
.++
T Consensus 88 s~~ 90 (193)
T 3kb5_A 88 EAP 90 (193)
T ss_dssp TSC
T ss_pred CcC
Confidence 653
No 9
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=98.07 E-value=4.9e-06 Score=70.43 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=50.5
Q ss_pred cccCCCCCCCCeEEecCCeeEEEEccccc----------ccchhccccccccceeEEEEEecCCCCcceEEEeeecCCcc
Q psy8040 191 HAWNPEDRSLNIFVKDDDKLTFHRHPVAQ----------STDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAP 260 (272)
Q Consensus 191 waWNp~DrS~NI~LK~ddklTfHRHPVaQ----------STDaIRGKkGls~G~H~WEI~W~~r~rGThAMVGVgTkeAp 260 (272)
.+-||+-..+++.|++|+ .++.+....| ...+|-|+.+|+.|+|||||+|.. ++.-.|||+.+.++
T Consensus 11 vtLDp~TA~~~L~lSed~-~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~---~~~w~vGV~~~si~ 86 (188)
T 2vok_A 11 ITLDRNTANSWLIISKDR-RQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQ---KEAWDLGVCRDSVQ 86 (188)
T ss_dssp CCBCGGGSCTTEEECTTS-CEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSSSEEEEEEECTT---CSCEEEEEEETTCC
T ss_pred eEECCccCCCCeEECCCC-CEEEECCccCCCCCCccceeeeccccccCcccCCCeEEEEEecC---CceEEEEEeeCCcC
Confidence 345777788899999876 4555543222 235899999999999999999984 67789999987654
No 10
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=98.05 E-value=6.7e-06 Score=69.09 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=44.9
Q ss_pred ccCCCCCCCCeEEecCCeeEEEEcccccccchhccccccccceeEEEEEecCCCCcceEEEeeecCCcc
Q psy8040 192 AWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAP 260 (272)
Q Consensus 192 aWNp~DrS~NI~LK~ddklTfHRHPVaQSTDaIRGKkGls~G~H~WEI~W~~r~rGThAMVGVgTkeAp 260 (272)
+=||+--. ++.|++|+ .+|-+.+ ..+|-|+.+|+.|+|||||+|.. ++.-.|||+...+.
T Consensus 15 TLDp~TA~-~l~lSed~-r~Vr~~~----~~~VLG~~~ftsGrHYWEVeV~~---~~~W~vGV~~~~~~ 74 (186)
T 3uv9_A 15 TLATNNIS-HAVIAEDK-RQVSSRA----GTGVLGSQSITSGKHYWEVDVSK---KSAWILGVCAGFQS 74 (186)
T ss_dssp CCCCCSSC-CCEECTTS-SCEECCC----SSCEECSSCBCSSEEEEEEECTT---CSCEEEEEESCSTT
T ss_pred EeCCCCcC-CceECCCC-CEEeecC----CCcCcCCCCCCCCCEEEEEEEcC---CCcEEEEEEEEEec
Confidence 34566655 47788875 4554443 34699999999999999999974 67789999976544
No 11
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=96.76 E-value=0.0014 Score=61.88 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=43.4
Q ss_pred ccccCCCCCCCCeEEecCCeeEEEEc---------------cccc---ccchhccccccccceeEEEEEecCCCCcceEE
Q psy8040 190 KHAWNPEDRSLNIFVKDDDKLTFHRH---------------PVAQ---STDCIRGRVGFTKGFHIWEVHWSARQRGTHAV 251 (272)
Q Consensus 190 ~waWNp~DrS~NI~LK~ddklTfHRH---------------PVaQ---STDaIRGKkGls~G~H~WEI~W~~r~rGThAM 251 (272)
+.+=||+--+ ++.|++|+ ..|++- |... ...+|=|+.||+.|+|||||++.. .|.=.
T Consensus 411 ~vtldp~ta~-~l~~s~d~-r~v~~~~~~~~~~~p~~~~~~~~~~rF~~~~~VLg~~~f~sGrhyWEV~v~~---~~~w~ 485 (602)
T 4b3n_A 411 DVTLATNNIS-HAVIAEDK-RQVSSRNPQIMYQAPGTLFTFPSLTNFNYCTGVLGSQSITSGKHYWEVDVSK---KSAWI 485 (602)
T ss_dssp CCCEECCSCC-SCEECTTS-SEEECCCC--------------------CCCCEEESSCBSSSEEEEEEECTT---CSCEE
T ss_pred EEEeCCCCCC-ceeEecCC-CEEEECCccccccCCCccCCCCCcccCCCCCEeccCCCCCCEEEEEEEEECC---CeeEE
Confidence 4455777666 57788875 456431 1111 346799999999999999999874 56668
Q ss_pred EeeecC
Q psy8040 252 VGVGTI 257 (272)
Q Consensus 252 VGVgTk 257 (272)
|||+..
T Consensus 486 ~Gv~~~ 491 (602)
T 4b3n_A 486 LGVCAG 491 (602)
T ss_dssp EEEECC
T ss_pred EEEeec
Confidence 999753
No 12
>1lqb_D HIF-1 alpha, hypoxia-inducible factor 1 alpha; protein-peptide complex, tumor suppressor, cancer, proteosomal degradation, ubiquitin; 2.00A {Homo sapiens}
Probab=32.14 E-value=11 Score=25.11 Aligned_cols=13 Identities=54% Similarity=0.897 Sum_probs=9.9
Q ss_pred ccccccccccccCc
Q psy8040 8 DIPMEVDDFQSSGL 21 (272)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (272)
-|||. ||||-.-+
T Consensus 17 YIpMd-dDFqL~~~ 29 (34)
T 1lqb_D 17 YIPMD-DDFQLRSF 29 (34)
T ss_pred ccccC-cccccccC
Confidence 48999 99995443
No 13
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=22.68 E-value=95 Score=23.20 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=16.9
Q ss_pred hhhHHHhhhchhhhhcceeEEE
Q psy8040 31 RVALAIAIRGLEEEMGSHITFE 52 (272)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~ 52 (272)
.-...-|+|.|.||.|-.+...
T Consensus 56 Es~~~aa~REl~EEtGl~~~~~ 77 (153)
T 3eds_A 56 ETPEEAVVREVWEETGLKVQVK 77 (153)
T ss_dssp SCHHHHHHHHHHHHHCEEEEEE
T ss_pred CCHHHHHHHHHHHHHCccceee
Confidence 3456678999999999877643
Done!