RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8040
(272 letters)
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription
regulation, transcription; 1.79A {Homo sapiens} PDB:
3f2o_A 2fnj_A 2v24_A 2ihs_A
Length = 212
Score = 132 bits (332), Expect = 5e-38
Identities = 69/105 (65%), Positives = 86/105 (81%)
Query: 163 PRELAHQRPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTD 222
+ L + +P RLD++LDMPP S + Q+ H+WN DRSLN+FVK+DDKL FHRHPVAQSTD
Sbjct: 5 LQGLDYCKPTRLDLLLDMPPVSYDVQLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTD 64
Query: 223 CIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQ 267
IRG+VG+T+G H+W++ W+ RQRGTHAVVGV T DAPLHSVGY
Sbjct: 65 AIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYT 109
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR
{Mus musculus} SCOP: b.29.1.22
Length = 226
Score = 125 bits (314), Expect = 4e-35
Identities = 53/116 (45%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 154 SSAPFKPVIPRELAHQ--RPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLT 211
SSA + L P L+ +L PP Q H WNP+D S NI VK+ L
Sbjct: 2 SSARQSTPTSQALYSDFSPPEGLEELLSAPPPDLVAQRHHGWNPKDCSENIDVKEGG-LC 60
Query: 212 FHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQ 267
F R PVAQSTD +RG+ G+++G H WE+ W QRGTHAVVGV T APL + Y
Sbjct: 61 FERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYA 116
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus,
apoptosis, UBL conjugation pathwayc, CL transcription
regulation, transcription, phosphoprotein; 1.80A {Homo
sapiens} PDB: 3ek9_A
Length = 217
Score = 124 bits (313), Expect = 4e-35
Identities = 54/142 (38%), Positives = 66/142 (46%), Gaps = 24/142 (16%)
Query: 126 HRHHRTRSGRGMSMGQKISNGVKTVNRESSAPFKPVIPRELAHQRPGRLDIILDMPPASR 185
H HH SG + P L+ +L PP
Sbjct: 2 HHHHHHSSGVDLGTENLYFQ-----------------------SMPEGLEELLSAPPPDL 38
Query: 186 ETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQ 245
Q +H WNP+D S NI VK+ L F R PVAQSTD RG+ G+++G H WE+ W Q
Sbjct: 39 GAQRRHGWNPKDCSENIEVKEGG-LYFERRPVAQSTDGARGKRGYSRGLHAWEISWPLEQ 97
Query: 246 RGTHAVVGVGTIDAPLHSVGYQ 267
RGTHAVVGV T APL + Y
Sbjct: 98 RGTHAVVGVATALAPLQTDHYA 119
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription,
SPRY domain, prote binding, histone methylation, RBBP5,
DPY-30, nuclear; 2.07A {Homo sapiens}
Length = 213
Score = 50.3 bits (120), Expect = 1e-07
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 12/82 (14%)
Query: 193 WNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVV 252
DR+ + + DD+LT + +R G KG +E+ T A +
Sbjct: 15 LALHDRAPQLKI-SDDRLTVVGE---KGYSMVRASHGVRKGAWYFEITVDEMPPDTAARL 70
Query: 253 GVGTIDAPL--------HSVGY 266
G L S +
Sbjct: 71 GWSQPLGNLQAPLGYDKFSYSW 92
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on
protein structural and functional analyses; 2.00A {Homo
sapiens}
Length = 171
Score = 43.4 bits (102), Expect = 2e-05
Identities = 15/78 (19%), Positives = 20/78 (25%), Gaps = 9/78 (11%)
Query: 197 DRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGT 256
S + D T H + C TK + +EV VG+
Sbjct: 4 GSSGFKHILVD-GDTLSYHGNSGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVP 62
Query: 257 IDAPL--------HSVGY 266
L SV Y
Sbjct: 63 QYYSLDHQPGWLPDSVAY 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.12
Identities = 40/271 (14%), Positives = 68/271 (25%), Gaps = 107/271 (39%)
Query: 1 MDPNNVKDIPMEVDDFQSSGLSAQFSAELDRVALAIAIRGLEEEMGS------HITFELH 54
P ++ G + + A+AIA E + F +
Sbjct: 258 FTPGELRSY--------LKGATGHSQGLV--TAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 55 LRDQSATNYCLSDYSQYPVVFF-LSHRYKSSSGGCGVSSSRCTASGVELRELRRHNYKSC 113
+R A YP S S GV S + S + +++ +
Sbjct: 308 VRCYEA----------YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY----- 352
Query: 114 VFPNKTSASYQDHRH-HRTRSGRGMSMGQKISNGVKTVNRESSAPFKPVIPRELAHQRPG 172
V NKT++ + IS VN G
Sbjct: 353 V--NKTNSHLPAGKQVE-------------ISL----VN--------------------G 373
Query: 173 RLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTK 232
++++ PP +SL LT + D + R+ F
Sbjct: 374 AKNLVVSGPP---------------QSLYGLN-----LTLRKAKAPSGLD--QSRIPF-- 409
Query: 233 GFHIWEVHWSARQRGTHAVVGVGTIDAPLHS 263
+R + +P HS
Sbjct: 410 -----------SERKLKFSNRFLPVASPFHS 429
Score = 30.8 bits (69), Expect = 0.55
Identities = 30/169 (17%), Positives = 45/169 (26%), Gaps = 73/169 (43%)
Query: 51 FELHLR--------DQSATNYCLSDYSQYPVVF---FL-------SHRYKSS-------- 84
L LR DQS +S+ + F FL SH +
Sbjct: 389 LNLTLRKAKAPSGLDQSRI-----PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 85 -SGGCGVSSSR------CTASGVELRELR---RHNYKSCVF--P------NKTSASYQDH 126
++ T G +LR L C+ P + A+
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT---- 499
Query: 127 RH----------------HRTRSGRGMSMGQKISNGVKTVNRESSAPFK 159
H HR + G G+ + I G +N + FK
Sbjct: 500 -HILDFGPGGASGLGVLTHRNKDGTGVRV---IVAGTLDINPDDDYGFK 544
Score = 28.1 bits (62), Expect = 4.6
Identities = 38/222 (17%), Positives = 68/222 (30%), Gaps = 70/222 (31%)
Query: 14 DDFQSS--GLSAQF------------SAELDRVALAIAIRGLEEE--MGSHI-TFELHLR 56
DD ++ L +F + D+V L + + E G+ I L
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV-LNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 57 DQSAT-----NYCLSDYSQYPVVFFLSHRYKSSSGGCGVSSS--RCTASGV--------- 100
++ T + +Y + S +S+ R G
Sbjct: 110 QENDTTLVKTKELIKNY--ITARIMAKRPFDKKS-----NSALFRAVGEGNAQLVAIFGG 162
Query: 101 ---------ELRELRRHNYKSCVFPNKTSASYQDHRHHRTRS------GRGMSMGQKISN 145
ELR+L + Y V ++ RT +G+++ + + N
Sbjct: 163 QGNTDDYFEELRDLYQT-YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 146 GVKTVNRE--SSAPFK-PVIP-RELAH---------QRPGRL 174
T +++ S P P+I +LAH PG L
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY,
TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo
sapiens}
Length = 193
Score = 29.1 bits (66), Expect = 1.1
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 223 CIRGRVGFTKGFHIWEVHWSARQRGTHAVVGV 254
+ ++G H WEV +GV
Sbjct: 56 AVVAHQQLSEGEHYWEVDVG---DKPRWALGV 84
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR
initiative, midwest center for structural genomics,
MCSG, U function; HET: MSE; 1.50A {Enterococcus
faecalis} SCOP: a.275.1.1
Length = 83
Score = 27.6 bits (61), Expect = 1.3
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 1 MDPNNVKDIPMEVDDFQSSGLSAQFSAELDRVALAIAIR 39
M + D + DF+ G S + + +L A+ IAI
Sbjct: 16 MSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAID 54
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Length = 114
Score = 27.8 bits (62), Expect = 1.9
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 166 LAHQRPGRLDIILDMPPASRETQVKH---AWNPEDRSLNIFVKDDDKLTFHRHPVAQSTD 222
L H G ++ +P + TQ + + + ++ H +
Sbjct: 4 LPHLSSG--EVASVLPLGKQLTQTPSAALFKEHRLEVMRMVLPAGKQVGSHSVAGPSTIQ 61
Query: 223 CIRGRVGFTKGFHIWEVH 240
C+ G V +H
Sbjct: 62 CLEGEVEIGVDGAQRRLH 79
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll
beta-sandwich fold, unknown function; 2.52A {Homo
sapiens} SCOP: b.29.1.22
Length = 201
Score = 27.9 bits (63), Expect = 3.1
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 223 CIRGRVGFTKGFHIWEVHWS 242
C+ G FT G H WEV
Sbjct: 53 CVLGTPRFTSGRHYWEVDVG 72
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding,
tripartite motif (TRIM) protein, SPRY systemic lupus
erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB:
2vol_B* 2iwg_B*
Length = 188
Score = 27.5 bits (62), Expect = 3.7
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 223 CIRGRVGFTKGFHIWEVHWS 242
+ G F+ G WEV +
Sbjct: 52 MVLGAQRFSSGKMYWEVDVT 71
>2lm3_A TRIM5alpha, tripartite motif-containing protein 5; ligase; NMR
{Macaca mulatta}
Length = 208
Score = 27.7 bits (62), Expect = 3.9
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 223 CIRGRVGFTKGFHIWEVHWS 242
+ G T G H WEV S
Sbjct: 62 GVLGSQSITSGKHYWEVDVS 81
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 27.5 bits (62), Expect = 4.5
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 180 MPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFH 213
+ R K +P + IFV D+ KLT H
Sbjct: 194 LSKEIRPVCRKFMQDPME----IFVDDETKLTLH 223
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton,
actin-binding inflammatory response, metal-binding,
signaling protein; 1.35A {Homo sapiens}
Length = 191
Score = 27.2 bits (61), Expect = 4.7
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 223 CIRGRVGFTKGFHIWEVH 240
+ G F G WEV
Sbjct: 56 IVLGSPSFLSGRRYWEVE 73
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked
with A synthetic...; single-chain FV, monoclonal
antibody, immunoglobulin; 1.30A {Mus musculus} PDB:
3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Length = 250
Score = 27.2 bits (61), Expect = 5.1
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 59 SATNYCLSDYSQYPVVF-------FLSHRYKSSSGGCGVSSSRCTASGVELRE 104
T +C + P F S GG G S S V+L++
Sbjct: 86 IGTYFCQQGNT-LPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQ 137
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 27.2 bits (61), Expect = 5.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 170 RPGRLDIILDMPPASRETQVK 190
RPGRLD ++ +P +++V
Sbjct: 173 RPGRLDQLIYIPLPDEKSRVA 193
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 27.1 bits (60), Expect = 7.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 170 RPGRLDIILDMPPASRETQVK 190
RPGRLD ++ +P +++V
Sbjct: 635 RPGRLDQLIYIPLPDEKSRVA 655
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP,
antiretroviral, HIV capsid, ligase; 1.55A {Macaca
mulatta}
Length = 186
Score = 26.5 bits (59), Expect = 7.2
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 223 CIRGRVGFTKGFHIWEVHWS 242
+ G T G H WEV S
Sbjct: 40 GVLGSQSITSGKHYWEVDVS 59
>1hbn_A Methyl-coenzyme M reductase I alpha subunit; methanogenesis,
biological methanogenesis, NI-enzyme, oxidoreductase;
HET: MHS AGM MGN F43 TP7; 1.16A
{Methanothermobacterthermautotrophicus} SCOP: a.89.1.1
d.58.31.2 PDB: 1hbm_A* 1hbo_A* 1hbu_A* 3m1v_A* 3m2r_A*
3m2u_A* 3m2v_A* 3m30_A* 3m32_A* 3pot_A* 1mro_A* 1e6v_A*
Length = 549
Score = 26.8 bits (59), Expect = 8.6
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 61 TNYCLSDYSQYPVV----FFLSHRYKSSSGGCGVSSSRCTASG 99
T Y L Y +YP + F S R + G S++ T +
Sbjct: 377 TFYGLEQYEEYPALLEDQFGGSXRAAVVAAAAGCSTAFATGNA 419
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.408
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,293,953
Number of extensions: 251932
Number of successful extensions: 573
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 27
Length of query: 272
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 180
Effective length of database: 4,133,061
Effective search space: 743950980
Effective search space used: 743950980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)