RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8040
         (272 letters)



>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 217

 Score =  132 bits (332), Expect = 2e-38
 Identities = 79/98 (80%), Positives = 89/98 (90%)

Query: 170 RPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVG 229
           +P R+DI+LDMPPASR+ Q+KH+WN EDRSLNIFVK+DDKLTFHRHPVAQSTDCIRG+VG
Sbjct: 3   KPARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVG 62

Query: 230 FTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQ 267
            TKG HIWE++W  RQRGTHAVVGV T DAPLHSVGYQ
Sbjct: 63  LTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQ 100


>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
           protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 213

 Score =  112 bits (280), Expect = 7e-31
 Identities = 50/107 (46%), Positives = 62/107 (57%), Gaps = 3/107 (2%)

Query: 163 PRELAH--QRPGRLDIILDMPPASRETQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQS 220
            + L      P  L+ +L  PP     Q  H WNP+D S NI VK+   L F R PVAQS
Sbjct: 5   SQALYSDFSPPEGLEELLSAPPPDLVAQRHHGWNPKDCSENIDVKEGG-LCFERRPVAQS 63

Query: 221 TDCIRGRVGFTKGFHIWEVHWSARQRGTHAVVGVGTIDAPLHSVGYQ 267
           TD +RG+ G+++G H WE+ W   QRGTHAVVGV T  APL +  Y 
Sbjct: 64  TDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYA 110


>d2i5ua1 a.275.1.1 (A:2-75) Uncaracterized protein EF2839
          {Enterococcus faecalis [TaxId: 1351]}
          Length = 74

 Score = 29.0 bits (65), Expect = 0.13
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 1  MDPNNVKDIPMEVDDFQSSGLSAQFSAELDRVALAIAI 38
          M    + D    + DF+  G S + + +L   A+ IAI
Sbjct: 13 MSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAI 50


>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 188

 Score = 27.7 bits (61), Expect = 1.1
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 23/89 (25%)

Query: 173 RLDIILDMPPASRE-------TQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIR 225
           ++D+  D+  A+            +     ++R        +    F          C+ 
Sbjct: 9   QVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRK-------EQAERFDTAL------CVL 55

Query: 226 GRVGFTKGFHIWEVHWSARQRGTHAVVGV 254
           G   FT G H WEV            VGV
Sbjct: 56  GTPRFTSGRHYWEVDVG---TSQVWDVGV 81


>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi
          [TaxId: 669]}
          Length = 114

 Score = 26.2 bits (57), Expect = 2.1
 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query: 37 AIRGLEEEMGSHI------TFELHLRDQSATNYCLSDYSQYPVVFFLSHRYKSSSGGCG 89
           I  L  E+GS         F   +     T   L    Q   +  +SH  KSS+   G
Sbjct: 10 KIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSEQLLYLKEISHALKSSAASFG 68


>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
          domain, VL-kappa {Mouse (Mus musculus), cluster 4
          [TaxId: 10090]}
          Length = 109

 Score = 26.2 bits (57), Expect = 2.2
 Identities = 6/28 (21%), Positives = 10/28 (35%)

Query: 48 HITFELHLRDQSATNYCLSDYSQYPVVF 75
           +     L +   + YC   Y   P+ F
Sbjct: 72 SLKINSLLPEDFGSYYCQHHYGTPPLTF 99


>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 179

 Score = 25.8 bits (56), Expect = 4.9
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 16/68 (23%)

Query: 187 TQVKHAWNPEDRSLNIFVKDDDKLTFHRHPVAQSTDCIRGRVGFTKGFHIWEVHWSARQR 246
            QV+     +           ++  F  +P       + G   F  G H WEV  +    
Sbjct: 21  RQVRLGDTQQSIP-------GNEERFDSYP------MVLGAQHFHSGKHYWEVDVT---G 64

Query: 247 GTHAVVGV 254
                +GV
Sbjct: 65  KEAWDLGV 72


>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor
          2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 24.9 bits (54), Expect = 7.3
 Identities = 7/33 (21%), Positives = 12/33 (36%)

Query: 38 IRGLEEEMGSHITFELHLRDQSATNYCLSDYSQ 70
          +  +     SH TF L L         ++ Y +
Sbjct: 56 VCNVTRRPASHQTFPLQLESGQTVECTVAQYFK 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,036,689
Number of extensions: 46697
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 11
Length of query: 272
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,254,276
Effective search space: 235803888
Effective search space used: 235803888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)