BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8041
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SS3|A Chain A, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS3|B Chain B, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS3|C Chain C, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS3|D Chain D, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS4|A Chain A, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS4|B Chain B, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS4|C Chain C, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS4|D Chain D, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS5|A Chain A, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
pdb|3SS5|B Chain B, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
pdb|3SS5|C Chain C, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
pdb|3SS5|D Chain D, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
Length = 479
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 69/79 (87%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
+E TCES SV+AATLANGG CPIT E+VL E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 301 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 360
Query: 61 AKSGVSGSMLVVVPNTMGI 79
AKSGV+G +L+VVPN MG+
Sbjct: 361 AKSGVAGGILLVVPNVMGM 379
>pdb|3UNW|A Chain A, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UNW|B Chain B, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UNW|C Chain C, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UNW|D Chain D, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UO9|A Chain A, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
pdb|3UO9|B Chain B, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
pdb|3UO9|C Chain C, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
pdb|3UO9|D Chain D, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
Length = 534
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 69/79 (87%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
+E TCES SV+AATLANGG CPIT E+VL E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 350 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 409
Query: 61 AKSGVSGSMLVVVPNTMGI 79
AKSGV+G +L+VVPN MG+
Sbjct: 410 AKSGVAGGILLVVPNVMGM 428
>pdb|3VP4|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
Inhibitor 4
Length = 316
Score = 126 bits (317), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 69/79 (87%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
+E TCES SV+AATLANGG CPIT E+VL E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 203 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 262
Query: 61 AKSGVSGSMLVVVPNTMGI 79
AKSGV+G +L+VVPN MG+
Sbjct: 263 AKSGVAGGILLVVPNVMGM 281
>pdb|3CZD|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
L-Glutamate
pdb|3VOY|A Chain A, Crystal Structure Of Human Glutaminase In Apo Form
pdb|3VOZ|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
Bptes
pdb|3VP0|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
L-Glutamine
pdb|3VP1|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
L-Glutamate And Bptes
pdb|3VP2|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
Inhibitor 2
pdb|3VP3|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
Inhibitor 3
Length = 315
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 69/79 (87%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
+E TCES SV+AATLANGG CPIT E+VL E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 202 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 261
Query: 61 AKSGVSGSMLVVVPNTMGI 79
AKSGV+G +L+VVPN MG+
Sbjct: 262 AKSGVAGGILLVVPNVMGM 280
>pdb|1U60|A Chain A, Mcsg Apc5046 Probable Glutaminase Ybas
pdb|1U60|B Chain B, Mcsg Apc5046 Probable Glutaminase Ybas
pdb|1U60|C Chain C, Mcsg Apc5046 Probable Glutaminase Ybas
pdb|1U60|D Chain D, Mcsg Apc5046 Probable Glutaminase Ybas
Length = 310
Score = 78.2 bits (191), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 53/75 (70%)
Query: 8 FSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSG 67
+ + ATLA GG+ P+T ++VL++++V +L+ M G+Y SG +A++VGLP KSGV G
Sbjct: 205 LATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGG 264
Query: 68 SMLVVVPNTMGIALF 82
+L VVP MGIA F
Sbjct: 265 GILAVVPGVMGIAAF 279
>pdb|3IF5|A Chain A, Crystal Structure Analysis Of Mglu
pdb|3IH8|A Chain A, Crystal Structure Analysis Of Mglu In Its Native Form
pdb|3IH8|B Chain B, Crystal Structure Analysis Of Mglu In Its Native Form
pdb|3IH9|A Chain A, Crystal Structure Analysis Of Mglu In Its Tris Form
pdb|3IH9|B Chain B, Crystal Structure Analysis Of Mglu In Its Tris Form
pdb|3IHA|A Chain A, Crystal Structure Analysis Of Mglu In Its Glutamate Form
pdb|3IHA|B Chain B, Crystal Structure Analysis Of Mglu In Its Glutamate Form
pdb|3IHB|A Chain A, Crystal Structure Analysis Of Mglu In Its Tris And
Glutamate Form
pdb|3IHB|B Chain B, Crystal Structure Analysis Of Mglu In Its Tris And
Glutamate Form
pdb|3AGD|A Chain A, Crystal Structure Of Mglu In Its Native Form In The
Presence Of 4.3m Nacl
pdb|3AGD|B Chain B, Crystal Structure Of Mglu In Its Native Form In The
Presence Of 4.3m Nacl
pdb|3AGE|A Chain A, Crystal Structure Of Mglu In Its L-Glutamate Binding Form
In The Presence Of 4.3m Nacl
pdb|3AGE|B Chain B, Crystal Structure Of Mglu In Its L-Glutamate Binding Form
In The Presence Of 4.3m Nacl
Length = 456
Score = 77.4 bits (189), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 54/79 (68%)
Query: 4 TCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKS 63
T + +V+ A LA GGI P+T E++L S R V+S+M S GMYD +GQ+ VG+PAKS
Sbjct: 200 TVKDLAVMGACLATGGIHPMTGERMLPSIVARRVVSVMTSSGMYDAAGQWLADVGIPAKS 259
Query: 64 GVSGSMLVVVPNTMGIALF 82
GV+G +L +P +GI +F
Sbjct: 260 GVAGGVLGALPGRVGIGVF 278
>pdb|3AGF|A Chain A, Crystal Structure Of Bacillus Glutaminase In The Presence
Of 4.3m Nacl
pdb|3AGF|B Chain B, Crystal Structure Of Bacillus Glutaminase In The Presence
Of 4.3m Nacl
Length = 327
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
ME+T E ++I LA+ G PI E+V+ + + +LM +CGMY+ SG++A VG+P
Sbjct: 207 MESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNASGKYAAFVGVP 266
Query: 61 AKSGVSGSMLVVVP 74
AKSGVSG ++ +VP
Sbjct: 267 AKSGVSGGIMALVP 280
>pdb|2PBY|A Chain A, Probable Glutaminase From Geobacillus Kaustophilus Hta426
pdb|2PBY|B Chain B, Probable Glutaminase From Geobacillus Kaustophilus Hta426
pdb|2PBY|C Chain C, Probable Glutaminase From Geobacillus Kaustophilus Hta426
pdb|2PBY|D Chain D, Probable Glutaminase From Geobacillus Kaustophilus Hta426
Length = 308
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
+E TC + I LA G P + E ++ + R + M +CGMY+ SG+FA KVG+P
Sbjct: 198 IEMTCIDLARIGLVLALDGRDPHSSEPLMPLDVARICKTFMVTCGMYNSSGEFAIKVGIP 257
Query: 61 AKSGVSGSMLVVVPNTMGIALF 82
AKSGVSG +L VP GI +F
Sbjct: 258 AKSGVSGGILAAVPGRCGIGVF 279
>pdb|1MKI|A Chain A, Crystal Structure Of Bacillus Subtilis Probable
Glutaminase, Apc1040
pdb|1MKI|B Chain B, Crystal Structure Of Bacillus Subtilis Probable
Glutaminase, Apc1040
Length = 330
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 ETTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPA 61
E+T E ++I LA+ G PI E+V+ + + +L +CG Y+ SG++A VG+PA
Sbjct: 211 ESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALXLTCGXYNASGKYAAFVGVPA 270
Query: 62 KSGVSGSMLVVVP 74
KSGVSG + +VP
Sbjct: 271 KSGVSGGIXALVP 283
>pdb|2OSU|A Chain A, Probable Glutaminase From Bacillus Subtilis Complexed With
6-diazo-5-oxo-l-norleucine
pdb|2OSU|B Chain B, Probable Glutaminase From Bacillus Subtilis Complexed With
6-diazo-5-oxo-l-norleucine
pdb|3BRM|A Chain A, Crystal Structure Of The Covalent Complex Between The
Bacillus Subtilis Glutaminase Ybgj And
5-Oxo-L-Norleucine Formed By Reaction Of The Protein
With 6-Diazo-5-Oxo-L- Norleucine
pdb|3BRM|B Chain B, Crystal Structure Of The Covalent Complex Between The
Bacillus Subtilis Glutaminase Ybgj And
5-Oxo-L-Norleucine Formed By Reaction Of The Protein
With 6-Diazo-5-Oxo-L- Norleucine
Length = 330
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 2 ETTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPA 61
E+T E ++I LA+ G PI E+V+ + + +L +CG Y+ SG++A VG+PA
Sbjct: 211 ESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALXLTCGXYNASGKYAAFVGVPA 270
Query: 62 KSGVSGSMLVVVP 74
KSGVSG + +VP
Sbjct: 271 KSGVSGGIXALVP 283
>pdb|3CDK|A Chain A, Crystal Structure Of The Co-Expressed Succinyl-Coa
Transferase A And B Complex From Bacillus Subtilis
pdb|3CDK|C Chain C, Crystal Structure Of The Co-Expressed Succinyl-Coa
Transferase A And B Complex From Bacillus Subtilis
Length = 241
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 19 GICPITEEKVL--RSESVRDVLSLMHSCGMYDY 49
G+C I E+ +L R + V+D+ + ++CG+ D+
Sbjct: 30 GLCGIPEQLILSIRDQGVKDLTVVSNNCGVDDW 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,531,051
Number of Sequences: 62578
Number of extensions: 81895
Number of successful extensions: 174
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 11
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)