Query psy8041
Match_columns 101
No_of_seqs 133 out of 602
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 16:55:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00971 glutaminase; Provisio 100.0 8.5E-51 1.8E-55 325.6 8.0 97 1-97 197-293 (307)
2 PRK12356 glutaminase; Reviewed 100.0 1.2E-50 2.6E-55 326.3 8.2 97 1-97 201-297 (319)
3 TIGR03814 Gln_ase glutaminase 100.0 1.3E-50 2.9E-55 323.8 8.1 97 1-97 190-286 (300)
4 PF04960 Glutaminase: Glutamin 100.0 5.7E-50 1.2E-54 318.1 5.9 97 1-97 176-272 (286)
5 PRK12357 glutaminase; Reviewed 100.0 8.3E-49 1.8E-53 316.5 8.4 97 1-97 206-312 (326)
6 COG2066 GlsA Glutaminase [Amin 100.0 4.8E-48 1E-52 310.1 7.3 97 1-97 199-295 (309)
7 KOG0506|consensus 100.0 1.4E-43 3E-48 299.6 7.8 96 1-96 372-467 (622)
8 TIGR02074 PBP_1a_fam penicilli 95.4 0.081 1.8E-06 45.1 7.7 81 1-83 391-498 (530)
9 PRK15105 peptidoglycan synthas 95.0 0.043 9.4E-07 47.2 4.9 64 2-65 421-496 (578)
10 PRK11240 penicillin-binding pr 94.4 0.16 3.5E-06 45.6 7.3 81 2-85 440-536 (772)
11 PF00905 Transpeptidase: Penic 94.3 0.041 8.9E-07 42.4 3.0 64 1-66 162-248 (304)
12 TIGR03423 pbp2_mrdA penicillin 94.1 0.24 5.2E-06 42.4 7.5 66 1-66 434-525 (592)
13 COG0768 FtsI Cell division pro 92.3 0.3 6.4E-06 42.1 5.4 65 1-65 440-528 (599)
14 TIGR02073 PBP_1c penicillin-bi 92.3 0.35 7.7E-06 43.0 5.9 86 1-87 415-519 (727)
15 TIGR02214 spoVD_pbp stage V sp 91.6 0.34 7.5E-06 41.9 4.9 64 2-66 407-494 (636)
16 TIGR02071 PBP_1b penicillin-bi 88.8 0.94 2E-05 40.5 5.4 81 1-83 546-655 (730)
17 COG4953 PbpC Membrane carboxyp 88.0 3.1 6.8E-05 37.9 8.1 85 2-88 437-538 (733)
18 PRK14850 penicillin-binding pr 86.7 1.2 2.6E-05 40.2 4.9 81 1-83 556-665 (764)
19 PRK03642 putative periplasmic 80.5 7.4 0.00016 32.2 6.7 34 3-38 302-335 (432)
20 PRK09506 mrcB bifunctional gly 79.6 3.4 7.3E-05 37.9 4.8 81 1-83 610-719 (830)
21 PF08793 2C_adapt: 2-cysteine 78.4 4.1 8.9E-05 23.7 3.4 34 12-47 4-37 (37)
22 COG0744 MrcB Membrane carboxyp 59.1 25 0.00054 31.3 5.6 81 1-82 462-568 (661)
23 PF06413 Neugrin: Neugrin; In 54.3 5.3 0.00012 31.3 0.6 12 46-57 214-225 (225)
24 PF14449 PT-TG: Pre-toxin TG 50.5 16 0.00036 23.9 2.4 29 16-46 24-52 (79)
25 cd08148 RuBisCO_large Ribulose 49.8 33 0.00072 28.7 4.6 49 2-52 139-194 (366)
26 cd08209 RLP_DK-MTP-1-P-enolase 49.4 36 0.00079 28.7 4.8 79 2-81 136-232 (391)
27 cd08207 RLP_NonPhot Ribulose b 48.1 38 0.00083 28.7 4.8 49 2-52 155-210 (406)
28 PRK10795 penicillin-binding pr 46.6 15 0.00033 32.1 2.3 19 2-20 460-478 (634)
29 cd04871 ACT_PSP_2 ACT domains 43.3 24 0.00052 22.9 2.3 20 3-22 9-28 (84)
30 COG5009 MrcA Membrane carboxyp 42.6 31 0.00067 32.1 3.6 64 1-65 560-667 (797)
31 PF10596 U6-snRNA_bdg: U6-snRN 41.9 15 0.00032 28.0 1.3 30 70-100 85-114 (160)
32 CHL00040 rbcL ribulose-1,5-bis 38.8 61 0.0013 28.2 4.7 78 2-82 179-277 (475)
33 PRK10753 transcriptional regul 38.3 18 0.00038 24.0 1.1 16 16-31 57-73 (90)
34 PRK11636 mrcA penicillin-bindi 37.8 26 0.00057 32.2 2.4 20 1-20 566-585 (850)
35 KOG0135|consensus 36.3 25 0.00055 31.8 2.0 21 30-50 100-120 (661)
36 TIGR03326 rubisco_III ribulose 35.8 66 0.0014 27.4 4.4 49 2-52 156-211 (412)
37 COG0333 RpmF Ribosomal protein 31.9 19 0.0004 23.0 0.4 34 9-49 18-51 (57)
38 cd08213 RuBisCO_large_III Ribu 31.5 1E+02 0.0023 26.2 4.9 51 2-52 143-198 (412)
39 PRK04208 rbcL ribulose bisopho 30.5 89 0.0019 27.1 4.4 51 2-52 172-227 (468)
40 PF00016 RuBisCO_large: Ribulo 29.7 34 0.00073 28.1 1.6 50 2-53 26-82 (309)
41 PRK10664 transcriptional regul 28.9 34 0.00073 22.7 1.3 16 16-31 57-73 (90)
42 cd08208 RLP_Photo Ribulose bis 28.5 1.2E+02 0.0027 26.0 4.8 29 2-30 172-200 (424)
43 TIGR03834 EAGR_box EAGR box. T 26.6 35 0.00075 19.0 0.8 12 44-55 6-17 (28)
44 cd08206 RuBisCO_large_I_II_III 26.2 1.2E+02 0.0027 25.8 4.4 51 2-52 144-199 (414)
45 TIGR03259 met_CoM_red_gam meth 26.1 1E+02 0.0022 24.9 3.6 58 16-93 106-167 (244)
46 smart00667 LisH Lissencephaly 25.4 21 0.00045 18.2 -0.2 29 31-59 4-32 (34)
47 cd00539 MCR_gamma Methyl-coenz 25.4 1.1E+02 0.0023 24.8 3.7 58 16-93 106-167 (246)
48 PF03800 Nuf2: Nuf2 family; I 24.7 49 0.0011 23.3 1.5 19 32-50 85-103 (146)
49 cd08212 RuBisCO_large_I Ribulo 24.3 1.4E+02 0.0031 25.8 4.5 50 1-52 156-212 (450)
50 PF06089 Asparaginase_II: L-as 24.2 3.8E+02 0.0082 22.3 6.8 74 3-81 190-271 (324)
51 PRK08278 short chain dehydroge 24.1 92 0.002 23.2 3.0 33 3-35 217-249 (273)
52 PF00681 Plectin: Plectin repe 23.8 77 0.0017 18.3 2.0 23 11-33 4-27 (45)
53 COG3588 Fructose-1,6-bisphosph 23.7 46 0.001 27.9 1.4 28 1-28 153-180 (332)
54 COG4545 Glutaredoxin-related p 23.5 56 0.0012 22.5 1.6 60 3-63 10-69 (85)
55 PRK09549 mtnW 2,3-diketo-5-met 22.8 1.4E+02 0.003 25.5 4.1 49 2-52 146-201 (407)
56 PF07020 Orthopox_C10L: Orthop 22.1 56 0.0012 22.4 1.3 17 45-61 8-24 (83)
57 PF11900 DUF3420: Domain of un 20.5 1.2E+02 0.0026 18.6 2.4 31 20-50 2-32 (49)
58 PF11116 DUF2624: Protein of u 20.2 2.3E+02 0.0049 19.4 4.0 43 1-43 29-81 (85)
No 1
>PRK00971 glutaminase; Provisional
Probab=100.00 E-value=8.5e-51 Score=325.64 Aligned_cols=97 Identities=43% Similarity=0.732 Sum_probs=95.2
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA 80 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa 80 (101)
|+|||+|||+||++|||+|+||+|+||+++++++|+|+|+|+||||||+||+|||+||+|+|||||||||+|+||++|||
T Consensus 197 i~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~s~M~TcGmYD~SG~fa~~VGlPaKSGVgGgIlavvPg~~gIa 276 (307)
T PRK00971 197 LEMSCVDLARAGLFLANGGVSPHTGERVVSPRQARQVNALMLTCGMYDASGEFAYRVGLPAKSGVGGGILAVVPGEMAIA 276 (307)
T ss_pred cceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHHHHHHHcCCccchHHHHHHcCCccccCCcceEEEEeCCCcEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCccccccceee
Q psy8041 81 LFFRTTQNVFVLFVGHR 97 (101)
Q Consensus 81 v~SP~LD~~gn~~~~~~ 97 (101)
||||+||++|||.+|-+
T Consensus 277 v~SP~LD~~GNSv~G~~ 293 (307)
T PRK00971 277 VWSPELDAKGNSLAGTA 293 (307)
T ss_pred EECCCcCCCCCCHHHHH
Confidence 99999999999999854
No 2
>PRK12356 glutaminase; Reviewed
Probab=100.00 E-value=1.2e-50 Score=326.27 Aligned_cols=97 Identities=38% Similarity=0.643 Sum_probs=95.2
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA 80 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa 80 (101)
|+|||+|||+||++|||+|+||+|||++++++++|+|+|+|+||||||+||+|||+||+|+|||||||||+|+||++|||
T Consensus 201 i~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~s~M~TCGmYd~SG~fa~~VGlPaKSGVgGgIlavvPg~~gIa 280 (319)
T PRK12356 201 TLVTARDLATMGATLAAGGVNPLTGKRVVDADNVPYILAEMTMEGLYERSGDWAYTVGLPGKSGVGGGILAVVPGKMGIA 280 (319)
T ss_pred cceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHHHHHHHcCCccchhhHHHHhCCccccCccceeEEEeCCceEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCccccccceee
Q psy8041 81 LFFRTTQNVFVLFVGHR 97 (101)
Q Consensus 81 v~SP~LD~~gn~~~~~~ 97 (101)
||||+||++|||.+|-+
T Consensus 281 v~SP~LD~~GNSv~G~~ 297 (319)
T PRK12356 281 AFSPPLDSAGNSVRGQK 297 (319)
T ss_pred EECCCcCCCCCcHHHHH
Confidence 99999999999999854
No 3
>TIGR03814 Gln_ase glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2).
Probab=100.00 E-value=1.3e-50 Score=323.82 Aligned_cols=97 Identities=45% Similarity=0.806 Sum_probs=95.4
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA 80 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa 80 (101)
|+|||+|||+||++|||+|+||+|+||+++++++|+|+++|+||||||+||+|||+||+|+|||||||||+|+||++|||
T Consensus 190 i~vt~~dLA~~~a~LAn~G~~P~tg~~v~s~~~~r~v~s~M~TcGmYd~SG~fa~~VGlPaKSGVgGgIlavvPg~~gIa 269 (300)
T TIGR03814 190 IEMTCKDLARAGLFLANGGVNPLTGEQVISAEVARRINALMLTCGLYDASGEFAYRVGLPAKSGVGGGILAVVPGKMGIA 269 (300)
T ss_pred cceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHHHHHHHcCCccchhhHHHHcCCccccCccceEEEEeCCceEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCccccccceee
Q psy8041 81 LFFRTTQNVFVLFVGHR 97 (101)
Q Consensus 81 v~SP~LD~~gn~~~~~~ 97 (101)
||||+||++|||.+|-+
T Consensus 270 v~SP~LD~~GNSv~G~~ 286 (300)
T TIGR03814 270 VFSPALDAAGNSVAGQK 286 (300)
T ss_pred EECCCcCCCCCCHHHHH
Confidence 99999999999999964
No 4
>PF04960 Glutaminase: Glutaminase; InterPro: IPR015868 Glutaminases (3.5.1.2 from EC) deaminate glutamine to glutamate. In Bacillus subtilis, glutaminase is encoded by glnA, which is part of an operon, glnA-glnT (formerly ybgJ-ybgH), where glnT encodes a glutamine transporter. The glnA-glnT operon is regulated by the 2-component system GlnK-GlnL in response to glutamine []. This entry represents the core structural motif of a family of glutaminases that include GlnA, which are characterised by their beta-lactamase-like topology, containing a cluster of alpha-helices and an alpha/beta sandwich. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli. Some species have two isozymes that may both be designated A (GlsA1 and GlsA2). ; GO: 0004359 glutaminase activity, 0006541 glutamine metabolic process; PDB: 2OSU_B 3BRM_A 3AGF_B 1MKI_B 2PBY_C 3SS5_D 3SS3_A 3SS4_C 3UO9_C 3UNW_C ....
Probab=100.00 E-value=5.7e-50 Score=318.14 Aligned_cols=97 Identities=57% Similarity=0.928 Sum_probs=89.2
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA 80 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa 80 (101)
|+|||+|||+||++|||+|+||+|+||+++++++|+++++|+||||||+||+|||+||+|+|||||||||+||||+||||
T Consensus 176 i~v~~~dLA~~~a~LAn~G~~P~t~~~v~~~~~~r~v~slM~tcGmYd~SG~fa~~vGlPaKSGVgGgilavvPg~~gIa 255 (286)
T PF04960_consen 176 IEVTCEDLARMAATLANGGVNPITGERVLSPEHVRRVLSLMLTCGMYDYSGEFAYRVGLPAKSGVGGGILAVVPGRMGIA 255 (286)
T ss_dssp EEEEHHHHHHHHHHHHTTTBETTTTEBSS-HHHHHHHHHHHHHHTTGGGHHHHHHHT-S-EEE-TTSEEEEEETTTEEEE
T ss_pred hHeeHHHHHHHHHHHhcCCCcCCCCCEecCHHHHHHHHHHHHhcCCCcchHHHHHHcCCccccCCCceEEEEeCCCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCccccccceee
Q psy8041 81 LFFRTTQNVFVLFVGHR 97 (101)
Q Consensus 81 v~SP~LD~~gn~~~~~~ 97 (101)
+|||+||++|||.+|-+
T Consensus 256 v~SP~LD~~GNSv~G~~ 272 (286)
T PF04960_consen 256 VYSPPLDEKGNSVRGMK 272 (286)
T ss_dssp EE-SEB-TTSSBHHHHH
T ss_pred EECCCCCCCCCcHHHHH
Confidence 99999999999999864
No 5
>PRK12357 glutaminase; Reviewed
Probab=100.00 E-value=8.3e-49 Score=316.53 Aligned_cols=97 Identities=40% Similarity=0.628 Sum_probs=94.8
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEec------
Q psy8041 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVP------ 74 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvP------ 74 (101)
|+|||+|||+||++|||+|+||+||||+++++++|+++|+|+||||||+||+|||+||+|+|||||||||+|||
T Consensus 206 i~vt~~dLA~~ga~LAn~Gv~P~tg~~vls~~~~r~v~a~M~tcGmYd~SG~fa~~VGlPaKSGVgGGIlavvPg~~~~~ 285 (326)
T PRK12357 206 IEVTTEDIALIGLILAHDGYHPIRKEQVIPKEVARLTKALMLTCGMYNASGKFAAFVGLPAKSGVSGGIMTLVPPKSRKD 285 (326)
T ss_pred cceeHHHHHHHHHHHhCCCcCCCCCCEecCHHHHHHHHHHHHhcCCccchhhHHHHhCCccccCcCceeEEEecCccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----CceEEEEEcCCCCccccccceee
Q psy8041 75 ----NTMGIALFFRTTQNVFVLFVGHR 97 (101)
Q Consensus 75 ----g~~gIav~SP~LD~~gn~~~~~~ 97 (101)
|++|||+|||+||++|||.+|-+
T Consensus 286 ~~~~g~~gIav~SP~LD~~GNSv~G~~ 312 (326)
T PRK12357 286 LPFQDGCGIGIYGPAIDEYGNSLPGIM 312 (326)
T ss_pred ccccCceEEEEECCCcCCCCCcHHHHH
Confidence 78999999999999999999854
No 6
>COG2066 GlsA Glutaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-48 Score=310.12 Aligned_cols=97 Identities=42% Similarity=0.774 Sum_probs=94.9
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA 80 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa 80 (101)
|+|||+|||+++++|||+|+||.|+|++++++++|+++|+|+||||||.|||||||||+|+||||||||||||||+||||
T Consensus 199 i~~~~~dLA~~g~~LA~~G~~p~tge~v~~~~~ar~i~a~M~TcGmYd~sG~fa~rVGlP~KSGVgGGI~AvvPg~~gIa 278 (309)
T COG2066 199 IEMNCVDLARLGLFLANGGVNPLTGERVVPADQARQINALMLTCGMYDASGEFAYRVGLPAKSGVGGGIMAVVPGEMGIA 278 (309)
T ss_pred HHhhHHHHHHHHHHHhcCCcCCCCCCcCCCHHHHHHHHHHHHHccccccchhhHhhcCCccccCcccceEEEccCCcEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCccccccceee
Q psy8041 81 LFFRTTQNVFVLFVGHR 97 (101)
Q Consensus 81 v~SP~LD~~gn~~~~~~ 97 (101)
||||+||++|||+.|-.
T Consensus 279 v~sP~Ld~~GNSv~G~~ 295 (309)
T COG2066 279 VWSPALDEAGNSVAGIA 295 (309)
T ss_pred EECCccCcCCCchHHHH
Confidence 99999999999998853
No 7
>KOG0506|consensus
Probab=100.00 E-value=1.4e-43 Score=299.59 Aligned_cols=96 Identities=64% Similarity=1.002 Sum_probs=94.6
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEE
Q psy8041 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIA 80 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIa 80 (101)
||+||+.+|+|||||||+|+||+|||++++++.+|.++|||.+|||||+||+|||.|||||||||||+|+.|||++|||+
T Consensus 372 iEvtCes~aVMAaTLANGGvcPit~E~~l~~~~cRdtLSLMySCGMYD~SGqFaFhVGLPAKSgVsG~mivVvPNVMGi~ 451 (622)
T KOG0506|consen 372 IEVTCESAAVMAATLANGGVCPITGERCLSPRACRDTLSLMYSCGMYDFSGQFAFHVGLPAKSGVSGAMIVVVPNVMGIA 451 (622)
T ss_pred eeeeccHHHHHHHHHhcCCcCCCCCCcccCcHHHHHHHHHHHhccccccccceEEEecCcccccccccEEEEeccceeee
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCcccccccee
Q psy8041 81 LFFRTTQNVFVLFVGH 96 (101)
Q Consensus 81 v~SP~LD~~gn~~~~~ 96 (101)
+||||||+-||+-+|-
T Consensus 452 l~SPpLDklGNs~rGv 467 (622)
T KOG0506|consen 452 LYSPPLDKLGNSCRGV 467 (622)
T ss_pred eccCCchhhcCccccH
Confidence 9999999999999884
No 8
>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.
Probab=95.39 E-value=0.081 Score=45.08 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=57.8
Q ss_pred CcccHHHHHHHHHHHhCCCCC--C------------------CCCceeechhhHHHHHHHHHhhccccccccceeeec--
Q psy8041 1 METTCESFSVIAATLANGGIC--P------------------ITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVG-- 58 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~--p------------------~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VG-- 58 (101)
+++|.-|||.+.++|||+|+- | ...+++++++++..+..+|...=- +..|..+..-|
T Consensus 391 ~~vTplqmA~ayaaiANgG~~~~P~~v~~I~d~~G~~v~~~~~~~~~vis~~~a~~v~~~L~~vv~-~GTg~~a~~~~~~ 469 (530)
T TIGR02074 391 VEVSPLEMASAYAVFANGGKYVEPHGIRKIVDRDGKVIYENKPTTTQVISPATAYIMTDMLKGVVE-SGTGRSARLPGRP 469 (530)
T ss_pred CCCCHHHHHHHHHHHHcCCEEccCEEEEEEECCCCCEEeccCCCCccCCCHHHHHHHHHHHHhhhc-ccchhhcccCCCC
Confidence 368999999999999999962 1 234678999999999999886532 34444433223
Q ss_pred ceeeccCCc-----eEEEEecCceEEEEEc
Q psy8041 59 LPAKSGVSG-----SMLVVVPNTMGIALFF 83 (101)
Q Consensus 59 lPaKSGVsG-----gIlavvPg~~gIav~S 83 (101)
+-+|+|.+= -.++..| +..++||-
T Consensus 470 vaGKTGTa~~~~d~WFvG~~P-~~~v~Vwv 498 (530)
T TIGR02074 470 VAGKTGTTQNSRDAWFVGYTP-YYVTAVWV 498 (530)
T ss_pred eEEEcccCCCCccEEEEEeCC-CceEEEEE
Confidence 348988863 3677778 56788885
No 9
>PRK15105 peptidoglycan synthase FtsI; Provisional
Probab=94.97 E-value=0.043 Score=47.23 Aligned_cols=64 Identities=27% Similarity=0.312 Sum_probs=45.5
Q ss_pred cccHHHHHHHHHHHhCCCC----------CCCCCceeechhhHHHHHHHHHhhccccccccceee--ecceeeccC
Q psy8041 2 ETTCESFSVIAATLANGGI----------CPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFK--VGLPAKSGV 65 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~----------~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~--VGlPaKSGV 65 (101)
.+|.-|||.+.+++||+|+ .+...++++++++.+.+..+|...=-...+|.-+.- +-+-+|+|.
T Consensus 421 ~vTPlQma~a~aaiANgG~~~p~~v~~~~~~~~~~~vis~~ta~~v~~~m~~Vv~~~Gt~~~a~~~g~~vaGKTGT 496 (578)
T PRK15105 421 MVTPLQLARVYATIGSYGIYRPLSITKVDPPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGT 496 (578)
T ss_pred hhhHHHHHHHHHHHhcCCeEcCcEEecccCCCCCcccCCHHHHHHHHHHHHhhccCCCcccccCCCCcceECceee
Confidence 5789999999999999997 234567889999999999999876321233433322 223478875
No 10
>PRK11240 penicillin-binding protein 1C; Provisional
Probab=94.41 E-value=0.16 Score=45.57 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=56.9
Q ss_pred cccHHHHHHHHHHHhCCCC---------CCCCCceeechhhHHHHHHHHHhhccccccccceeeecce--eeccCCce--
Q psy8041 2 ETTCESFSVIAATLANGGI---------CPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP--AKSGVSGS-- 68 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~---------~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlP--aKSGVsGg-- 68 (101)
++|..|||.+.++|||+|+ ++...+++++++++..+..+|...--.. +.-+..-|.| +|+|-+=+
T Consensus 440 ~vtplela~AYa~~ANgG~~~~p~~~~~~~~~~~~vis~~tA~~~~~~L~~vv~~~--~~a~~~~~~~vAGKTGTS~~~r 517 (772)
T PRK11240 440 GARLEDMVAAYSAFARHGKAAKLRLQPDDPLLERPLMSPGAAWIIRRIMADEAQPL--PDAALPRVVPLAWKTGTSYGYR 517 (772)
T ss_pred CCcHHHHHHHHHHHHcCCEEeeeEEcCCCccccCCCCCHHHHHHHHHHHHHHHhhh--hhhhccCCCeEEEECccCCCCc
Confidence 6889999999999999997 2334578999999999999998764331 2212211333 89998754
Q ss_pred ---EEEEecCceEEEEEcCC
Q psy8041 69 ---MLVVVPNTMGIALFFRT 85 (101)
Q Consensus 69 ---IlavvPg~~gIav~SP~ 85 (101)
.++.-|. ..++||==.
T Consensus 518 DaWfvG~tP~-yv~~VWvG~ 536 (772)
T PRK11240 518 DAWAIGVNAR-YVIGIWTGR 536 (772)
T ss_pred eEEEEEcCCC-EEEEEEEec
Confidence 5666664 467777543
No 11
>PF00905 Transpeptidase: Penicillin binding protein transpeptidase domain; InterPro: IPR001460 This signature identifies a large group of proteins, which include: Beta-lactamase precursor (3.5.2.6 from EC, penicillinase) Peptidoglycan synthetase ftsI (2.4.1.129 from EC, peptidoglycan glycosyltransferase 3) Methicillin resistance mecR1 protein Methicillin resistance blaR1 protein The large number of penicillin binding proteins, which are represented in this group of sequences, are responsible for the final stages of peptidoglycan biosynthesis for cell wall formation. The proteins synthesise cross-linked peptidoglycan from lipid intermediates, and contain a penicillin-sensitive transpeptidase carboxy-terminal domain. The active site serine (residue 337 in P14677 from SWISSPROT) is conserved in all members of this family []. MecR1 and BlaR1 are metallopeptidases belonging to MEROPS peptidase family M56, clan M-. BlaR1 and MecR1 cleave their cognate transcriptional repressors BlaI and MecI, respectively, activating the synthesis of MecA. MecR1 is present in Staphylococcus aureus and Staphylococcus sciuri, whereas BlaR1 (also known as BlaR, PenR1, or PenJ) has been found in Bacillus licheniformis, Staphylococcus epidermidis, Staphylococcus haemolyticus, and several S. aureus strains. These proteins are either plasmid-encoded, chromosomal, or transposon-mediated. MecR1/BlaR1 proteins are made up by homologous N-terminal 330-residue transmembrane metallopeptidase domains linked to extracellular 260-residue homologous PBP-like penicillin sensor moieties. ; GO: 0008658 penicillin binding, 0009273 peptidoglycan-based cell wall biogenesis; PDB: 3FWL_A 3VMA_A 2Z2M_E 2Z2L_E 1QME_A 1RP5_B 2ZC4_E 2ZC3_E 1QMF_A 3HBR_A ....
Probab=94.32 E-value=0.041 Score=42.38 Aligned_cols=64 Identities=23% Similarity=0.322 Sum_probs=45.4
Q ss_pred CcccHHHHHHHHHHHhCCCCC---------------------CCCCceeechhhHHHHHHHHHhhccccccccceeeecc
Q psy8041 1 METTCESFSVIAATLANGGIC---------------------PITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGL 59 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~---------------------p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGl 59 (101)
+.+|..|+|.+.++|||+|+- +...+++++++++..+..+|...--.. .+ .+..-+.
T Consensus 162 ~~vtplqma~~~atian~G~~~~p~~i~~i~~~~g~~~~~~~~~~~~~~~s~~~a~~l~~~l~~vv~~g-~~-~~~~~~~ 239 (304)
T PF00905_consen 162 VSVTPLQMASAYATIANGGVYVKPHLIKKIEDPNGKVIYFTPKPKKKQVISPETAYILTEMLREVVTEG-TG-RAKIPGY 239 (304)
T ss_dssp SBBEHHHHHHHHHHHHTTTEEE--BSEEEEEETTSTEEEEESSEEEEESS-HHHHHHHHHHHHHHHHTT-TT-GGHBTTS
T ss_pred ccccHHHHHHhhhhhhhhccccceEEEeeecccccccccccccccceeeecchhccccccceeeeeecC-cc-cccCCCc
Confidence 468999999999999999752 122367899999999999998765444 44 4444444
Q ss_pred e--eeccCC
Q psy8041 60 P--AKSGVS 66 (101)
Q Consensus 60 P--aKSGVs 66 (101)
| +|+|-+
T Consensus 240 ~vaGKTGTa 248 (304)
T PF00905_consen 240 PVAGKTGTA 248 (304)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEeee
Confidence 4 777653
No 12
>TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).
Probab=94.14 E-value=0.24 Score=42.44 Aligned_cols=66 Identities=21% Similarity=0.107 Sum_probs=45.3
Q ss_pred CcccHHHHHHHHHHHhCCCCCC---------------------C-CCceeechhhHHHHHHHHHhhccc-cccccceee-
Q psy8041 1 METTCESFSVIAATLANGGICP---------------------I-TEEKVLRSESVRDVLSLMHSCGMY-DYSGQFAFK- 56 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~p---------------------~-tge~vl~~~~~r~v~alM~tcGmY-d~SG~fa~~- 56 (101)
+++|.-|||.+.++|||+|+-. . ..++++++++++.+..+|...=-+ +..|..++-
T Consensus 434 ~~vTplqma~ayaaiAN~G~~~~P~~V~~i~~~~g~~v~~~~~~~~~~~vis~~~a~~v~~~m~~vv~~~~GTg~~a~~~ 513 (592)
T TIGR03423 434 VLVTPLQLAVATAALANGGKLYKPHLVKSIEDPDGGVVQETEPEVLRPLPISPENLDVVREGMRDVVNEPGGTARRARLG 513 (592)
T ss_pred chhhHHHHHHHHHHHHcCCcEeeeEEEEEeecCCCceeeccCCcccccCCCCHHHHHHHHHHHHHHhcCCCCceehhccC
Confidence 3689999999999999999622 1 125689999999999999864211 245555432
Q ss_pred ecc--eeeccCC
Q psy8041 57 VGL--PAKSGVS 66 (101)
Q Consensus 57 VGl--PaKSGVs 66 (101)
.|. -+|+|..
T Consensus 514 ~g~~vaGKTGTa 525 (592)
T TIGR03423 514 LPYKMAGKTGTA 525 (592)
T ss_pred CCCeEEEEeecc
Confidence 233 3788743
No 13
>COG0768 FtsI Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]
Probab=92.35 E-value=0.3 Score=42.11 Aligned_cols=65 Identities=26% Similarity=0.291 Sum_probs=46.7
Q ss_pred CcccHHHHHHHHHHHhCCCC-----------CC---------CCCceeechhhHHHHHHHHHhhcccc--ccccceeeec
Q psy8041 1 METTCESFSVIAATLANGGI-----------CP---------ITEEKVLRSESVRDVLSLMHSCGMYD--YSGQFAFKVG 58 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~-----------~p---------~tge~vl~~~~~r~v~alM~tcGmYd--~SG~fa~~VG 58 (101)
+.+|.-|||++.++|||+|+ +| ...++++++++++.+...|...=-.. .+|.++.--|
T Consensus 440 ~~vTPlQla~a~a~iaN~G~~~~P~lv~~~~~~~~~~~~~~~~~~~~~is~~~~~~v~~~m~~Vv~~~~gg~~~~a~v~g 519 (599)
T COG0768 440 LLVTPLQLAQAYATIANGGKLVKPHLVKGIEDPVGENKKEPPVLKKRVISPETAEKVREGMRAVVNDGGGGTGKAAAVPG 519 (599)
T ss_pred hhhhHHHHHHHHHHHHcCCEEeccEEEeeccCccccccccccccccccCCHHHHHHHHHHHHHHccCCCCCcceecccCC
Confidence 46899999999999999995 11 13667899999999999998875444 3445554233
Q ss_pred ce--eeccC
Q psy8041 59 LP--AKSGV 65 (101)
Q Consensus 59 lP--aKSGV 65 (101)
.+ +|+|-
T Consensus 520 ~~iaGKTGT 528 (599)
T COG0768 520 YRIAGKTGT 528 (599)
T ss_pred ceeeecccc
Confidence 33 67764
No 14
>TIGR02073 PBP_1c penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function.
Probab=92.33 E-value=0.35 Score=42.98 Aligned_cols=86 Identities=22% Similarity=0.180 Sum_probs=57.3
Q ss_pred CcccHHHHHHHHHHHhCCCCC--CC---------CCceeechhhHHHHHHHHHhhccccc-cccceeeecc--eeeccCC
Q psy8041 1 METTCESFSVIAATLANGGIC--PI---------TEEKVLRSESVRDVLSLMHSCGMYDY-SGQFAFKVGL--PAKSGVS 66 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~--p~---------tge~vl~~~~~r~v~alM~tcGmYd~-SG~fa~~VGl--PaKSGVs 66 (101)
.++|..|||.+.++|||+|+- |. ..+++++++++..+..+|...=-... .+.-+..-|. =+|+|.+
T Consensus 415 ~~vTplqla~aYaa~ANgG~~~~P~~i~~~~~~~~~~~vis~~tA~~v~~~L~~vv~~g~t~~~~~~~~~~~vAGKTGTs 494 (727)
T TIGR02073 415 AEITLQDLANLYAMLANQGLSGPLRFLQTDAKRPERERLLSPGAAWIVLDILKDRPRPDDTLPLSALPTRLPLAWKTGTS 494 (727)
T ss_pred CCCCHHHHHHHHHHHHcCCEEcCCEEEecccCCCCCCcCCCHHHHHHHHHHHHhhcccCCcchhhhccCCCceEEECcCC
Confidence 368999999999999999962 11 23489999999999999987633221 1111111133 3899987
Q ss_pred ce-----EEEEecCceEEEEEcCCCC
Q psy8041 67 GS-----MLVVVPNTMGIALFFRTTQ 87 (101)
Q Consensus 67 Gg-----IlavvPg~~gIav~SP~LD 87 (101)
=+ .++.-| +..++||----|
T Consensus 495 ~~~~daWfvG~tp-~y~v~VwvG~~d 519 (727)
T TIGR02073 495 YGFRDAWAAGVSG-RYTIGVWVGNFD 519 (727)
T ss_pred CCCcceEEEEecC-CEEEEEEEecCC
Confidence 43 466665 457888865433
No 15
>TIGR02214 spoVD_pbp stage V sporulation protein D. This model describes the spoVD subfamily of homologs of the cell division protein FtsI, a penicillin binding protein. This subfamily is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of spoVD.
Probab=91.57 E-value=0.34 Score=41.87 Aligned_cols=64 Identities=23% Similarity=0.309 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHHHhCCCC--CCC--------------------CCceeechhhHHHHHHHHHhhccccccccceeeec-
Q psy8041 2 ETTCESFSVIAATLANGGI--CPI--------------------TEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVG- 58 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~--~p~--------------------tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VG- 58 (101)
.+|.-|||.+.+++||+|+ .|. ..++++++++++.+..+|...= -+.+|..+.--|
T Consensus 407 ~vTPlqma~~~aaiAN~G~~~~P~lv~~i~~~~g~~~~~~~~~~~~~~~~s~~~a~~v~~~m~~vv-~~GT~~~a~~~g~ 485 (636)
T TIGR02214 407 TVTPIQLMTAVNAVANGGKLIQPHIMKEISDSQNNAVDQTFEPEVKRQVVSKETTQKLRLALETVV-SKGSGKNAFIEGY 485 (636)
T ss_pred ccCHHHHHHHHHHHhcCCEEeccEEEEEEEcCCCceeeeccCCccccCCCCHHHHHHHHHHHHHHh-hCCccccccCCCc
Confidence 5899999999999999995 221 1246789999999999997652 134444333223
Q ss_pred -ceeeccCC
Q psy8041 59 -LPAKSGVS 66 (101)
Q Consensus 59 -lPaKSGVs 66 (101)
+-+|+|..
T Consensus 486 ~vaGKTGTA 494 (636)
T TIGR02214 486 RVGGKTGTA 494 (636)
T ss_pred eEEeeeeEe
Confidence 33788853
No 16
>TIGR02071 PBP_1b penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B.
Probab=88.76 E-value=0.94 Score=40.47 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=54.0
Q ss_pred CcccHHHHHHHHHHHhCCCCC--C------------------CCCceeechhhHHHHHHHHHhhcccccccccee-ee-c
Q psy8041 1 METTCESFSVIAATLANGGIC--P------------------ITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAF-KV-G 58 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~--p------------------~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~-~V-G 58 (101)
+++|.-|+|.+.++|||+|+- | ...+++++++++..+..+|... +-+.+|..+. .. +
T Consensus 546 ~~vTPlqmA~aYatiANgG~~~~p~~I~~I~d~~G~~v~~~~~~~~~vis~~~a~~v~~~L~~V-V~~GTg~~~~~~~~~ 624 (730)
T TIGR02071 546 INLTPYEVAQLYQTIASGGNRAPLSAVRSVLDEDGKVLYQSDPQAEQAVPSQAAYLTLYAMQQV-VQRGTARSLGADFPS 624 (730)
T ss_pred CCCCHHHHHHHHHHHHCCCEEccCEEEEEEECCCCCEEeecCCCcccCCCHHHHHHHHHHHHHh-hhcccchhhhhcCCC
Confidence 468999999999999999962 2 1235788999999988888754 2234444332 11 3
Q ss_pred --ceeeccCCc-----eEEEEecCceEEEEEc
Q psy8041 59 --LPAKSGVSG-----SMLVVVPNTMGIALFF 83 (101)
Q Consensus 59 --lPaKSGVsG-----gIlavvPg~~gIav~S 83 (101)
+-+|+|.+= -.++.-|. .-.+||-
T Consensus 625 ~~vAGKTGTt~~~~DaWFvG~tp~-~~~~VWv 655 (730)
T TIGR02071 625 LSLAGKTGTTNDNRDSWFAGIDGK-EVTIIWL 655 (730)
T ss_pred CeeEEEcccCCCCccEEEEEecCC-eEEEEEE
Confidence 348999752 25666654 3556665
No 17
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=87.99 E-value=3.1 Score=37.92 Aligned_cols=85 Identities=21% Similarity=0.227 Sum_probs=59.3
Q ss_pred cccHHHHHHHHHHHhCCCC----------CCCCCceeechhhHHHHHHHHHh---hccccccccceeeecceeeccCCce
Q psy8041 2 ETTCESFSVIAATLANGGI----------CPITEEKVLRSESVRDVLSLMHS---CGMYDYSGQFAFKVGLPAKSGVSGS 68 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~----------~p~tge~vl~~~~~r~v~alM~t---cGmYd~SG~fa~~VGlPaKSGVsGg 68 (101)
++|-+|||.+-+.|||+|+ +|.++++++|++.+-+++.+|.. -|+++.+=+-+ .++-=|.|.|=|
T Consensus 437 gi~L~dLa~lYa~lAn~G~~~~L~~~~~~~~~~~~~l~s~~Aaw~i~dIl~~~~~P~~~~~~~~~~--~piawKTGTSyG 514 (733)
T COG4953 437 GITLEDLAQLYAALANQGKAGPLRDTLDDDPLTERTLLSPGAAWQILDILSDVARPGLPNGALPSV--RPIAWKTGTSYG 514 (733)
T ss_pred cccHHHHHHHHHHHhcCCceecccccCCCCCCCCccccCcchHHHHHHHHhccCCCCcccCCcccc--cceeEeccCccc
Confidence 6889999999999999997 78889999999999998888865 46666655532 344456665544
Q ss_pred E----EEEecCceEEEEEcCCCCc
Q psy8041 69 M----LVVVPNTMGIALFFRTTQN 88 (101)
Q Consensus 69 I----lavvPg~~gIav~SP~LD~ 88 (101)
. -+=+-|++-|+||-=..|.
T Consensus 515 yRDAWsvG~~g~Y~l~VWvGr~dg 538 (733)
T COG4953 515 YRDAWSVGVFGRYVLGVWVGRFDG 538 (733)
T ss_pred cccceeecccCceEEEEEEeCCCC
Confidence 1 1123445566666544443
No 18
>PRK14850 penicillin-binding protein 1b; Provisional
Probab=86.68 E-value=1.2 Score=40.20 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=53.1
Q ss_pred CcccHHHHHHHHHHHhCCCCC--C------------------CCCceeechhhHHHHHHHHHhhcccccccccee----e
Q psy8041 1 METTCESFSVIAATLANGGIC--P------------------ITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAF----K 56 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~--p------------------~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~----~ 56 (101)
+++|.-|||.+.++|||+|+- | ...+++++++++..+...|... +-+..|..+. .
T Consensus 556 ~~vTPlqmA~aYatiANgG~~~~p~~I~~V~d~~G~vi~~~~~~~~~vis~~tA~~v~~~M~~V-V~~GTg~~~~~~~~~ 634 (764)
T PRK14850 556 INLTPMEVAQVFQIIGSGGYKSSLSSIRSIISDDNKVLYQNFPQSKHVESSQASYLTLYAMQQV-VKSGTAKSLGTIFKE 634 (764)
T ss_pred CCCCHHHHHHHHHHHhcCCeEeccEEEEEEECCCCcEEeccCCCCCCCCCHHHHHHHHHHHHhh-hhccchhhhhhcCCC
Confidence 468999999999999999972 1 2346789999999998888755 2233444321 1
Q ss_pred ecceeeccCC-----ceEEEEecCceEEEEEc
Q psy8041 57 VGLPAKSGVS-----GSMLVVVPNTMGIALFF 83 (101)
Q Consensus 57 VGlPaKSGVs-----GgIlavvPg~~gIav~S 83 (101)
.-+-+|+|-+ .=.++.-|.. -+++|-
T Consensus 635 ~~vAGKTGTt~~~rDaWFvG~t~~~-v~~VWv 665 (764)
T PRK14850 635 FSLAGKTGTTNNLVDSWFVGIDGKQ-VVITWI 665 (764)
T ss_pred CeEEEECccCCCCcCEEEEEecCCE-EEEEEE
Confidence 2234898875 2355555544 444554
No 19
>PRK03642 putative periplasmic esterase; Provisional
Probab=80.46 E-value=7.4 Score=32.16 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHH
Q psy8041 3 TTCESFSVIAATLANGGICPITEEKVLRSESVRDVL 38 (101)
Q Consensus 3 v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~ 38 (101)
.|++|+|+++..|.|+|.- .++++|+++.++...
T Consensus 302 sTa~Dlakf~~~lL~~G~~--~g~~lls~~~v~~~~ 335 (432)
T PRK03642 302 SNTGDMAVLMQVMLNGGGY--GNVQLFDAETVKMFT 335 (432)
T ss_pred cCHHHHHHHHHHHHhcCCc--CCccccCHHHHHHHh
Confidence 5899999999999999863 578999999887543
No 20
>PRK09506 mrcB bifunctional glycosyl transferase/transpeptidase; Reviewed
Probab=79.61 E-value=3.4 Score=37.86 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=51.1
Q ss_pred CcccHHHHHHHHHHHhCCCCC--C------------------CCCceeechhhHHHHHHHHHhhcccccccccee-ee-c
Q psy8041 1 METTCESFSVIAATLANGGIC--P------------------ITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAF-KV-G 58 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~--p------------------~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~-~V-G 58 (101)
+++|.-|||.+.++|||+|+- | ...+++++++++..+..+|... +-+..|..+. .+ |
T Consensus 610 ~~vTPlqmA~aYat~ANgG~~~~P~~I~~V~d~~G~vi~~~~~~~~~vis~~tA~l~~~~M~~V-V~~GTg~~~~~~~~g 688 (830)
T PRK09506 610 LNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLYTMQQV-VQRGTGRQLGAKYPN 688 (830)
T ss_pred ccccHHHHHHHHHHHHcCCeEccceEEEEEECCCCcEEeccCCCccCCCCHHHHHHHHHHHHhh-hccCchhhhhhcCCC
Confidence 468999999999999999962 2 1235778888888888777653 2233444321 11 3
Q ss_pred c--eeeccCCc-----eEEEEecCceEEEEEc
Q psy8041 59 L--PAKSGVSG-----SMLVVVPNTMGIALFF 83 (101)
Q Consensus 59 l--PaKSGVsG-----gIlavvPg~~gIav~S 83 (101)
. =+|+|.+= =.++.-|... .++|-
T Consensus 689 ~~vAGKTGTt~~~rDsWFvG~t~~~v-~~VWv 719 (830)
T PRK09506 689 LHLAGKTGTTNDLVDSWFAGIDGKEV-TITWV 719 (830)
T ss_pred CeEEEEeccCCCCCCEEEEEeeCCEE-EEEEE
Confidence 3 38998763 2555555543 33443
No 21
>PF08793 2C_adapt: 2-cysteine adaptor domain; InterPro: IPR014901 The virus-specific 2-cysteine adaptor is found fused to OTU/A20-like peptidases and S/T protein kinases. The associations to these proteins indicate that they might function as viral adaptors connecting the kinases and OTU/A20 peptidases to specific targets [].
Probab=78.43 E-value=4.1 Score=23.71 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=23.9
Q ss_pred HHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccc
Q psy8041 12 AATLANGGICPITEEKVLRSESVRDVLSLMHSCGMY 47 (101)
Q Consensus 12 ~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmY 47 (101)
..++.|..+||+||+.+-.-.-+. ..|+.-|+.|
T Consensus 4 ~~f~~np~~NP~Tgr~Ik~~gp~y--~~l~~~C~~~ 37 (37)
T PF08793_consen 4 EEFHRNPTVNPITGRKIKPGGPTY--KKLVKECGGY 37 (37)
T ss_pred HHHHhCCCCCCCCCCcCCCCChHH--HHHHHHcCCC
Confidence 467899999999999997554433 2455566544
No 22
>COG0744 MrcB Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]
Probab=59.15 E-value=25 Score=31.29 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=54.6
Q ss_pred CcccHHHHHHHHHHHhCCCCC-------------------CCCCceeechhhHHHHHHHHHhhcccccccccee--eecc
Q psy8041 1 METTCESFSVIAATLANGGIC-------------------PITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAF--KVGL 59 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~-------------------p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~--~VGl 59 (101)
.++|..|+|.+-+++||+|.- +...+|++++++.-.++++|...=-+-..+..+. ..=.
T Consensus 462 ~~~sp~~ma~aY~~fangG~~~~p~~I~ki~~~~Gvl~~~~~~~~rv~~~~~a~~m~~ml~~vv~~tg~~~~a~~~~~~~ 541 (661)
T COG0744 462 SEVSPLEMASAYATFANGGTYYPPHFIRKVTDADGVLYDNPPKVKRVLSPQAAYLMTDMLQGVVTPTGTGAAAKLPGPYA 541 (661)
T ss_pred CCCCHHHHHHhHHHHhcCCeecCCeeEEEEECCCCcEEecCCCceeecCHHHHHHHHHHHHHHHHhcCcccccccCcccc
Confidence 478999999999999999962 2345799999999999999887644323333333 2334
Q ss_pred eeeccCCce-----EEEEecCceEEEEE
Q psy8041 60 PAKSGVSGS-----MLVVVPNTMGIALF 82 (101)
Q Consensus 60 PaKSGVsGg-----IlavvPg~~gIav~ 82 (101)
++|.|-.=- .+...|.. -.++|
T Consensus 542 ~GKTGTt~~~~D~WfvG~tp~~-~~avW 568 (661)
T COG0744 542 AGKTGTTNDNRDAWFVGYTPQL-TTAVW 568 (661)
T ss_pred cccccCCCCCcceEEEeccCCe-EEEEE
Confidence 457775432 45555553 55555
No 23
>PF06413 Neugrin: Neugrin; InterPro: IPR010487 This family contains mouse and human neugrin proteins. Neugrin and m-neugrin are mainly expressed in neurons in the nervous system, and are thought to play an important role in the process of neuronal differentiation []. Homologues of neugrin are found in fungi suggesting they have a alternative role or more than one function.
Probab=54.33 E-value=5.3 Score=31.30 Aligned_cols=12 Identities=25% Similarity=0.944 Sum_probs=11.0
Q ss_pred cccccccceeee
Q psy8041 46 MYDYSGQFAFKV 57 (101)
Q Consensus 46 mYd~SG~fa~~V 57 (101)
+||..|+|.|||
T Consensus 214 FfDsdGnFLYRI 225 (225)
T PF06413_consen 214 FFDSDGNFLYRI 225 (225)
T ss_pred cCCCCCCeeccC
Confidence 799999999986
No 24
>PF14449 PT-TG: Pre-toxin TG
Probab=50.49 E-value=16 Score=23.88 Aligned_cols=29 Identities=38% Similarity=0.233 Sum_probs=22.0
Q ss_pred hCCCCCCCCCceeechhhHHHHHHHHHhhcc
Q psy8041 16 ANGGICPITEEKVLRSESVRDVLSLMHSCGM 46 (101)
Q Consensus 16 An~G~~p~tge~vl~~~~~r~v~alM~tcGm 46 (101)
|-.|+||.|||++ ...-|.+-.+|...|+
T Consensus 24 ~~~G~D~~TGekl--s~~dr~~a~~~~~~~~ 52 (79)
T PF14449_consen 24 AITGKDPITGEKL--SMWDRALAGGMVLSGG 52 (79)
T ss_pred HHcccCCCCcCCc--cHHHHHHHHHHHHhcC
Confidence 4479999999999 3445667788887776
No 25
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=49.84 E-value=33 Score=28.71 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHHHhCCCCCCCCCceeec-------hhhHHHHHHHHHhhcccccccc
Q psy8041 2 ETTCESFSVIAATLANGGICPITEEKVLR-------SESVRDVLSLMHSCGMYDYSGQ 52 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~-------~~~~r~v~alM~tcGmYd~SG~ 52 (101)
-.+.+++|.++.-+|.+|+|-+..+..+. ++-++.+...|.-+ +|+.|+
T Consensus 139 Glsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a--~~eTG~ 194 (366)
T cd08148 139 GLNPKYTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRV--QEETGE 194 (366)
T ss_pred CCCHHHHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHH--HHhhCC
Confidence 46889999999999999999988877765 34455555555544 666666
No 26
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=49.42 E-value=36 Score=28.72 Aligned_cols=79 Identities=14% Similarity=0.248 Sum_probs=49.1
Q ss_pred cccHHHHHHHHHHHhCCCCCCCCCceeech----hhHHHHHHHHHhhc-ccccccc---ceeeecce----------eec
Q psy8041 2 ETTCESFSVIAATLANGGICPITEEKVLRS----ESVRDVLSLMHSCG-MYDYSGQ---FAFKVGLP----------AKS 63 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~~----~~~r~v~alM~tcG-mYd~SG~---fa~~VGlP----------aKS 63 (101)
-.+.+++|.++.-+|-+|+|-+..+..+.. ..-+++.++|...- -++++|+ |+..+==+ ++.
T Consensus 136 Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~~~~em~~ra~~~~~ 215 (391)
T cd08209 136 GLDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLTGPVFTLKEKARRLVE 215 (391)
T ss_pred CCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHH
Confidence 468899999999999999999887776633 23344555554432 2777777 44433111 011
Q ss_pred cCCceEEEEecCceEEEE
Q psy8041 64 GVSGSMLVVVPNTMGIAL 81 (101)
Q Consensus 64 GVsGgIlavvPg~~gIav 81 (101)
-|+..+.+-|...|+++
T Consensus 216 -~G~~~~mv~~~~~G~~~ 232 (391)
T cd08209 216 -AGANALLFNVFAYGLDV 232 (391)
T ss_pred -hCCCEEEEeccccchHH
Confidence 24445666666666554
No 27
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=48.12 E-value=38 Score=28.72 Aligned_cols=49 Identities=27% Similarity=0.394 Sum_probs=35.0
Q ss_pred cccHHHHHHHHHHHhCCCCCCCCCceeech-------hhHHHHHHHHHhhcccccccc
Q psy8041 2 ETTCESFSVIAATLANGGICPITEEKVLRS-------ESVRDVLSLMHSCGMYDYSGQ 52 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~~-------~~~r~v~alM~tcGmYd~SG~ 52 (101)
-.+.+++|.++.-+|-+|+|-+..+..+.. +-++.+...|.-+ +++.|+
T Consensus 155 Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a--~~eTG~ 210 (406)
T cd08207 155 GLTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDH--AQRTGR 210 (406)
T ss_pred CCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHH--HHhhCC
Confidence 468999999999999999999887766633 3334444444444 566776
No 28
>PRK10795 penicillin-binding protein 2; Provisional
Probab=46.59 E-value=15 Score=32.07 Aligned_cols=19 Identities=37% Similarity=0.300 Sum_probs=17.9
Q ss_pred cccHHHHHHHHHHHhCCCC
Q psy8041 2 ETTCESFSVIAATLANGGI 20 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~ 20 (101)
.+|.-|||.+.+++||+|+
T Consensus 460 ~vTPlQma~~~aaiANgG~ 478 (634)
T PRK10795 460 TATPIQMSKALMTLINDGI 478 (634)
T ss_pred chhHHHHHHHHHHHHcCCe
Confidence 6899999999999999997
No 29
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=43.28 E-value=24 Score=22.94 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=18.3
Q ss_pred ccHHHHHHHHHHHhCCCCCC
Q psy8041 3 TTCESFSVIAATLANGGICP 22 (101)
Q Consensus 3 v~~~dLA~~~a~LAn~G~~p 22 (101)
+++..+|+.+..||..|.|-
T Consensus 9 ~~a~~ia~Vs~~lA~~~~NI 28 (84)
T cd04871 9 LTAEQLAAVTRVVADQGLNI 28 (84)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 68899999999999999885
No 30
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=42.57 E-value=31 Score=32.07 Aligned_cols=64 Identities=25% Similarity=0.268 Sum_probs=42.9
Q ss_pred CcccHHHHHHHHHHHhCCCC--CCCC---------------------------------------CceeechhhHHHHHH
Q psy8041 1 METTCESFSVIAATLANGGI--CPIT---------------------------------------EEKVLRSESVRDVLS 39 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~--~p~t---------------------------------------ge~vl~~~~~r~v~a 39 (101)
.++|.-++|+..+.|||+|. +|+- .+|++++..+-++.|
T Consensus 560 ~e~Tplqma~AYaVfaNGG~~VeP~~I~~I~Dr~Gkvif~~~~~~~~~~~~~~~~~~~~~~~~~~~~qVid~~~ay~its 639 (797)
T COG5009 560 GETTPLQMARAYAVFANGGKRVEPYFIDRIEDRNGKVIFRAEPRVCCRCNADEANNQEEQTLADYAPQVIDPMTAYQITS 639 (797)
T ss_pred ccccHHHHHhhHhhhhcCCeEecceeeeeeecCCCceEeecCchhhhhhcccccccccccccccccccccCchHHHHHHH
Confidence 47899999999999999994 3321 146888888888888
Q ss_pred HHHhhccccccccceeeecce---eeccC
Q psy8041 40 LMHSCGMYDYSGQFAFKVGLP---AKSGV 65 (101)
Q Consensus 40 lM~tcGmYd~SG~fa~~VGlP---aKSGV 65 (101)
+|.+.=.| ..+.=+-+.+.| +|+|.
T Consensus 640 ml~~vv~~-GT~~~a~~L~r~DiAGKTGT 667 (797)
T COG5009 640 MLRGVVQR-GTAARAGRLGRPDIAGKTGT 667 (797)
T ss_pred HHHHHHhh-ccHHHHhhcCCcccccCCCC
Confidence 88776333 222223245555 56654
No 31
>PF10596 U6-snRNA_bdg: U6-snRNA interacting domain of PrP8; InterPro: IPR019580 This entry represents the interacting site for U6-snRNA, which is part of U4/U6. U5 tri-snRNPs complex of the spliceosome is a prime candidate for the role of cofactor in the spliceosome's RNA core. The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that Prp8 could directly affect the function of the catalytic core, perhaps acting as a splicing cofactor [].
Probab=41.91 E-value=15 Score=28.00 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=26.1
Q ss_pred EEEecCceEEEEEcCCCCccccccceeeeee
Q psy8041 70 LVVVPNTMGIALFFRTTQNVFVLFVGHRLKI 100 (101)
Q Consensus 70 lavvPg~~gIav~SP~LD~~gn~~~~~~~~~ 100 (101)
+..+|++...=-|||.+|. +|-.||++.+|
T Consensus 85 l~qiPNRrf~LWWsPtINR-~nvyvGfqvql 114 (160)
T PF10596_consen 85 LNQIPNRRFTLWWSPTINR-ANVYVGFQVQL 114 (160)
T ss_pred cccccccccccccCCcccc-CCceEEEEeec
Confidence 5689999999999999997 67889997765
No 32
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=38.78 E-value=61 Score=28.18 Aligned_cols=78 Identities=9% Similarity=0.064 Sum_probs=49.2
Q ss_pred cccHHHHHHHHHHHhCCCCCCCCCceeech-------hhHHHHHHHHHhhcccccccc---ceeeec--ce---------
Q psy8041 2 ETTCESFSVIAATLANGGICPITEEKVLRS-------ESVRDVLSLMHSCGMYDYSGQ---FAFKVG--LP--------- 60 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~~-------~~~r~v~alM~tcGmYd~SG~---fa~~VG--lP--------- 60 (101)
-.+.+++|.++.-+|-+|+|-+..+..+.. +-++.+...|.-+ ++++|+ |++.+= -+
T Consensus 179 GLsp~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a--~~eTG~~~~y~~NiTa~~~~em~~ra~~ 256 (475)
T CHL00040 179 GLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKA--QAETGEIKGHYLNATAGTCEEMYKRAVF 256 (475)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHH--HHhhCCcceeeeccCCCCHHHHHHHHHH
Confidence 468899999999999999998887766533 3344444444444 677777 333221 00
Q ss_pred eeccCCceEEEEecCceEEEEE
Q psy8041 61 AKSGVSGSMLVVVPNTMGIALF 82 (101)
Q Consensus 61 aKSGVsGgIlavvPg~~gIav~ 82 (101)
++. -|+..+.|-|...|++..
T Consensus 257 a~e-~G~~~~mv~~~~~G~~al 277 (475)
T CHL00040 257 ARE-LGVPIVMHDYLTGGFTAN 277 (475)
T ss_pred HHH-cCCceEEEeccccccchH
Confidence 111 355566677777776653
No 33
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=38.34 E-value=18 Score=24.00 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=12.7
Q ss_pred hCCCCCCCCCcee-ech
Q psy8041 16 ANGGICPITEEKV-LRS 31 (101)
Q Consensus 16 An~G~~p~tge~v-l~~ 31 (101)
|..|.||.|||.+ +++
T Consensus 57 ~R~grNP~Tge~i~i~a 73 (90)
T PRK10753 57 ERTGRNPQTGKEIKIAA 73 (90)
T ss_pred CccccCCCCCCEEEEcC
Confidence 5678999999997 444
No 34
>PRK11636 mrcA penicillin-binding protein 1a; Provisional
Probab=37.82 E-value=26 Score=32.19 Aligned_cols=20 Identities=30% Similarity=0.218 Sum_probs=18.2
Q ss_pred CcccHHHHHHHHHHHhCCCC
Q psy8041 1 METTCESFSVIAATLANGGI 20 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~ 20 (101)
+++|..|||.+.++|||+|+
T Consensus 566 ~~vTplqlA~AYat~ANgG~ 585 (850)
T PRK11636 566 ASFTPMQVARGYAVMANGGF 585 (850)
T ss_pred ccCCHHHHHHHHHHHHcCCe
Confidence 36899999999999999996
No 35
>KOG0135|consensus
Probab=36.29 E-value=25 Score=31.85 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=17.6
Q ss_pred chhhHHHHHHHHHhhcccccc
Q psy8041 30 RSESVRDVLSLMHSCGMYDYS 50 (101)
Q Consensus 30 ~~~~~r~v~alM~tcGmYd~S 50 (101)
.++.-....+||.+||+||.|
T Consensus 100 ~~~~~~k~~al~E~lg~yd~s 120 (661)
T KOG0135|consen 100 GPEAELKKFALTEALGIYDQS 120 (661)
T ss_pred chHHHHHHHHHHHHHhhcCcc
Confidence 456667888999999999986
No 36
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=35.84 E-value=66 Score=27.38 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=34.3
Q ss_pred cccHHHHHHHHHHHhCCCCCCCCCceeech-------hhHHHHHHHHHhhcccccccc
Q psy8041 2 ETTCESFSVIAATLANGGICPITEEKVLRS-------ESVRDVLSLMHSCGMYDYSGQ 52 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~~-------~~~r~v~alM~tcGmYd~SG~ 52 (101)
-.+.+++|.++.-+|-+|+|-+..+..+.. +-++.+...+.-+ ++++|+
T Consensus 156 Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a--~~eTG~ 211 (412)
T TIGR03326 156 GLSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKV--EAETGE 211 (412)
T ss_pred cCChHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHH--HHHhCC
Confidence 468899999999999999998887766632 3344444444333 566666
No 37
>COG0333 RpmF Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=31.95 E-value=19 Score=22.99 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccc
Q psy8041 9 SVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDY 49 (101)
Q Consensus 9 A~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~ 49 (101)
+..+.++.+--+||.+||..|+...+. -||+|..
T Consensus 18 sh~~l~~~~~~~c~~cG~~~l~Hrvc~-------~cg~Y~g 51 (57)
T COG0333 18 SHDALKAPTLSVCPNCGEYKLPHRVCL-------KCGYYKG 51 (57)
T ss_pred hhHhhhCccceeccCCCCcccCceEcC-------CCCCccC
Confidence 456667777778999999999998875 5888875
No 38
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=31.54 E-value=1e+02 Score=26.20 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=34.2
Q ss_pred cccHHHHHHHHHHHhCCCCCCCCCceeech----hhHHHHHHHHHhhc-ccccccc
Q psy8041 2 ETTCESFSVIAATLANGGICPITEEKVLRS----ESVRDVLSLMHSCG-MYDYSGQ 52 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~~----~~~r~v~alM~tcG-mYd~SG~ 52 (101)
-.+.+++|.++.-++-+|+|-+..+..+.. ..-+++.+.|..-- -+++.|+
T Consensus 143 Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~ 198 (412)
T cd08213 143 GLSPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGE 198 (412)
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Confidence 468999999999999999999887766642 22334444443321 2566666
No 39
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=30.46 E-value=89 Score=27.10 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=34.6
Q ss_pred cccHHHHHHHHHHHhCCCCCCCCCceeech----hhHHHHHHHHHhh-cccccccc
Q psy8041 2 ETTCESFSVIAATLANGGICPITEEKVLRS----ESVRDVLSLMHSC-GMYDYSGQ 52 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~~----~~~r~v~alM~tc-GmYd~SG~ 52 (101)
-++.+++|.++.-++-+|+|-+..+..+.. ..-+++.++|... --++++|+
T Consensus 172 GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~ 227 (468)
T PRK04208 172 GLSAKNYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGE 227 (468)
T ss_pred CCCHHHHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCC
Confidence 468899999999999999998887766532 2233444444331 12677777
No 40
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=29.66 E-value=34 Score=28.07 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=33.4
Q ss_pred cccHHHHHHHHHHHhCCCCCCCCCceeech-------hhHHHHHHHHHhhccccccccc
Q psy8041 2 ETTCESFSVIAATLANGGICPITEEKVLRS-------ESVRDVLSLMHSCGMYDYSGQF 53 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~~-------~~~r~v~alM~tcGmYd~SG~f 53 (101)
-.+.+++|.++.-+|.+|+|-+..+..+.. +-++.+...|.-+ +++.|+.
T Consensus 26 Glsp~~~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a--~~eTG~~ 82 (309)
T PF00016_consen 26 GLSPEELAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRA--EEETGEK 82 (309)
T ss_dssp TS-HHHHHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHH--HHHHSS-
T ss_pred eecccchhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhcc--cccccee
Confidence 468999999999999999987765555432 4455555555554 7777775
No 41
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=28.94 E-value=34 Score=22.73 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=12.8
Q ss_pred hCCCCCCCCCcee-ech
Q psy8041 16 ANGGICPITEEKV-LRS 31 (101)
Q Consensus 16 An~G~~p~tge~v-l~~ 31 (101)
|..|.||.|||.+ +++
T Consensus 57 aR~grNP~Tge~i~i~a 73 (90)
T PRK10664 57 ARTGRNPQTGKEITIAA 73 (90)
T ss_pred CccccCCCCCCEEEEcC
Confidence 5678999999997 444
No 42
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=28.51 E-value=1.2e+02 Score=25.97 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=24.6
Q ss_pred cccHHHHHHHHHHHhCCCCCCCCCceeec
Q psy8041 2 ETTCESFSVIAATLANGGICPITEEKVLR 30 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~ 30 (101)
-.+.+++|+++.-++.+|+|-+..+..+.
T Consensus 172 GLsp~~~a~~~y~~~~GGvD~IKDDE~l~ 200 (424)
T cd08208 172 GLPPGEFAELGYQSWLGGLDIAKDDEMLA 200 (424)
T ss_pred cCCHHHHHHHHHHHHcCCccccccccccc
Confidence 46889999999999999999887766653
No 43
>TIGR03834 EAGR_box EAGR box. The EAGR box (Enriched in Aromatic and Glycine Residues) is found in three different proteins of the Mycoplasma genitalium terminal organelle, which acts in both cytadherence and gliding motility. The presence of this domain in a genome predicts the Mycoplasma-type terminal organelle structure, gliding motility, and cytadherence. The EAGR box may occur from one to nine times in a protein.
Probab=26.65 E-value=35 Score=19.04 Aligned_cols=12 Identities=33% Similarity=0.869 Sum_probs=9.7
Q ss_pred hcccccccccee
Q psy8041 44 CGMYDYSGQFAF 55 (101)
Q Consensus 44 cGmYd~SG~fa~ 55 (101)
-|.||++++|..
T Consensus 6 YG~yd~~~~WiW 17 (28)
T TIGR03834 6 YGYYDENGEWIW 17 (28)
T ss_pred cccCcCCCcEEE
Confidence 478999999875
No 44
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=26.16 E-value=1.2e+02 Score=25.80 Aligned_cols=51 Identities=10% Similarity=0.151 Sum_probs=33.8
Q ss_pred cccHHHHHHHHHHHhCCCCCCCCCceeech----hhHHHHHHHHHhhc-ccccccc
Q psy8041 2 ETTCESFSVIAATLANGGICPITEEKVLRS----ESVRDVLSLMHSCG-MYDYSGQ 52 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~~----~~~r~v~alM~tcG-mYd~SG~ 52 (101)
-.+.+++|.++.-+|-+|+|-+..+..+.. ..-+++.+.|...- -+++.|+
T Consensus 144 Glsp~~~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~ 199 (414)
T cd08206 144 GLSPKEYARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGE 199 (414)
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCC
Confidence 468999999999999999998887765433 12334444443221 1566666
No 45
>TIGR03259 met_CoM_red_gam methyl-coenzyme M reductase, gamma subunit. Members of this protein family are the gamma subunit of methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). This enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes.
Probab=26.10 E-value=1e+02 Score=24.92 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=36.5
Q ss_pred hCCCCCCCC--Cceeech--hhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEEEEcCCCCcccc
Q psy8041 16 ANGGICPIT--EEKVLRS--ESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIALFFRTTQNVFV 91 (101)
Q Consensus 16 An~G~~p~t--ge~vl~~--~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIav~SP~LD~~gn 91 (101)
--.|+||-| |.|++.. +....+-....-+-||| ||.+|+-|..+ -| .|=+||++|-
T Consensus 106 r~RGvD~GtLSGRqiiE~RErDlEk~sK~l~ete~fD-----------pArtGiRGaTV---HG------HslRLdEnGm 165 (244)
T TIGR03259 106 RFRGVDPGTLSGRQIVEARERDLEQISKELVETELFD-----------PATTGVRGATV---HG------HSLRLDEDGV 165 (244)
T ss_pred HhcCCCCCccccceeeehhhhhHHHHHHHHHhhhccC-----------chhccccccce---ec------ceeeecCCCh
Confidence 346888854 9999743 33333333444444665 78888888643 22 4678888886
Q ss_pred cc
Q psy8041 92 LF 93 (101)
Q Consensus 92 ~~ 93 (101)
-|
T Consensus 166 MF 167 (244)
T TIGR03259 166 MF 167 (244)
T ss_pred hH
Confidence 65
No 46
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=25.37 E-value=21 Score=18.15 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHhhccccccccceeeecc
Q psy8041 31 SESVRDVLSLMHSCGMYDYSGQFAFKVGL 59 (101)
Q Consensus 31 ~~~~r~v~alM~tcGmYd~SG~fa~~VGl 59 (101)
.+..+.|...+..+|+++.+-.|..+.++
T Consensus 4 ~~l~~lI~~yL~~~g~~~ta~~l~~e~~~ 32 (34)
T smart00667 4 SELNRLILEYLLRNGYEETAETLQKESGL 32 (34)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHhCC
Confidence 45678899999999999988777665554
No 47
>cd00539 MCR_gamma Methyl-coenzyme M reductase (MCR) gamma subunit. MCR catalyzes the terminal step of methane formation in the energy metabolism of all methanogenic archaea, in which methyl-coenzyme M and coenzyme B are converted to methane and the heterodisulfide of coenzyme M and coenzyme B (CoM-S-S-CoB). MCR is a dimer of trimers, each of which consists of one alpha, one beta, and one gamma subunit, with two identical active sites containing nickel porphinoid factor 430 (F430).
Probab=25.36 E-value=1.1e+02 Score=24.80 Aligned_cols=58 Identities=14% Similarity=0.319 Sum_probs=36.5
Q ss_pred hCCCCCCC--CCceeech--hhHHHHHHHHHhhccccccccceeeecceeeccCCceEEEEecCceEEEEEcCCCCcccc
Q psy8041 16 ANGGICPI--TEEKVLRS--ESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNTMGIALFFRTTQNVFV 91 (101)
Q Consensus 16 An~G~~p~--tge~vl~~--~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKSGVsGgIlavvPg~~gIav~SP~LD~~gn 91 (101)
--.|+||- ||.|++.. +....+-....-+-||| ||.+|+-|..+ =| .|=+||++|-
T Consensus 106 r~RGvD~GtLSGRqiiE~RErDlEk~sK~l~ete~fD-----------pArtGiRGaTV---HG------HslRLdEnGm 165 (246)
T cd00539 106 RYRGVDTGTLSGRQIIEARERDLEKIAKELLETELFD-----------PARTGVRGATV---HG------HSLRLDEDGL 165 (246)
T ss_pred HhcCCCCCccccceeeehhhhhHHHHHHHHHhhhccC-----------chhccccccce---ec------ceeeecCCCh
Confidence 34688885 49999743 33333333444445665 78888888643 22 4678888886
Q ss_pred cc
Q psy8041 92 LF 93 (101)
Q Consensus 92 ~~ 93 (101)
-|
T Consensus 166 MF 167 (246)
T cd00539 166 MF 167 (246)
T ss_pred hH
Confidence 65
No 48
>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.
Probab=24.71 E-value=49 Score=23.26 Aligned_cols=19 Identities=26% Similarity=0.681 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHhhcccccc
Q psy8041 32 ESVRDVLSLMHSCGMYDYS 50 (101)
Q Consensus 32 ~~~r~v~alM~tcGmYd~S 50 (101)
...|.+..+|..||.+|.+
T Consensus 85 ~l~~~~~~~~~~~gv~DF~ 103 (146)
T PF03800_consen 85 NLFRHLQKFLKDCGVPDFS 103 (146)
T ss_dssp HHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHcCCCCCC
Confidence 4568889999999999764
No 49
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=24.26 E-value=1.4e+02 Score=25.77 Aligned_cols=50 Identities=10% Similarity=0.206 Sum_probs=34.1
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCCceeech-------hhHHHHHHHHHhhcccccccc
Q psy8041 1 METTCESFSVIAATLANGGICPITEEKVLRS-------ESVRDVLSLMHSCGMYDYSGQ 52 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~p~tge~vl~~-------~~~r~v~alM~tcGmYd~SG~ 52 (101)
+-.+.+++|.++.-+|-+|+|-+..+..+.. +-++.+...|.-+ ++++|+
T Consensus 156 iGlsp~~~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a--~~eTG~ 212 (450)
T cd08212 156 LGLSAKNYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKA--QAETGE 212 (450)
T ss_pred cCCCHHHHHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHH--HHhhCC
Confidence 3468899999999999999998887766633 2333333333333 566665
No 50
>PF06089 Asparaginase_II: L-asparaginase II; InterPro: IPR010349 This family consists of several bacterial L-asparaginase II proteins. L-asparaginase (3.5.1.1 from EC) catalyses the hydrolysis of L-asparagine to L-aspartate and ammonium. Rhizobium etli possesses two asparaginases: asparaginase I, which is thermostable and constitutive, and asparaginase II, which is thermolabile, induced by asparagine and repressed by the carbon source [].
Probab=24.15 E-value=3.8e+02 Score=22.28 Aligned_cols=74 Identities=24% Similarity=0.304 Sum_probs=51.4
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccc-cccccce----eeec--ceeeccCCceEEEEecC
Q psy8041 3 TTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMY-DYSGQFA----FKVG--LPAKSGVSGSMLVVVPN 75 (101)
Q Consensus 3 v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmY-d~SG~fa----~~VG--lPaKSGVsGgIlavvPg 75 (101)
+.-..||++.+.||+....| --..+.++++...|..-=.| ..+|+|- ..++ +=+|.|-=|...+.+|.
T Consensus 190 lpL~~lA~a~arla~~~~~~-----~~~~~a~~~i~~AM~~hP~~VaG~gr~~T~Lm~~~~G~~vaK~GAEGV~~~~l~~ 264 (324)
T PF06089_consen 190 LPLRNLARAYARLAAPEGLP-----EERRAAARRIADAMRAHPEMVAGTGRFDTELMRAFPGRLVAKGGAEGVYCAALPD 264 (324)
T ss_pred cCHHHHHHHHHHHhCCCCCc-----hhhHHHHHHHHHHHHhCcceEccCCCccHHHHHhCCCcEEEEeCcceEEEEEecC
Confidence 45678999999999976322 22346677777777765333 2345542 2344 77999999999999999
Q ss_pred -ceEEEE
Q psy8041 76 -TMGIAL 81 (101)
Q Consensus 76 -~~gIav 81 (101)
..||++
T Consensus 265 ~g~gvAl 271 (324)
T PF06089_consen 265 EGLGVAL 271 (324)
T ss_pred CceEEEE
Confidence 778876
No 51
>PRK08278 short chain dehydrogenase; Provisional
Probab=24.08 E-value=92 Score=23.21 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCCceeechhhHH
Q psy8041 3 TTCESFSVIAATLANGGICPITEEKVLRSESVR 35 (101)
Q Consensus 3 v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r 35 (101)
.+.+|+|.....|.+.....+||+-+++++.++
T Consensus 217 ~~p~~va~~~~~l~~~~~~~~~G~~~~~~~~~~ 249 (273)
T PRK08278 217 RTPEIMADAAYEILSRPAREFTGNFLIDEEVLR 249 (273)
T ss_pred CCHHHHHHHHHHHhcCccccceeEEEeccchhh
Confidence 467788888888888877777888777776655
No 52
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=23.79 E-value=77 Score=18.33 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=16.3
Q ss_pred HHHHHhCCC-CCCCCCceeechhh
Q psy8041 11 IAATLANGG-ICPITEEKVLRSES 33 (101)
Q Consensus 11 ~~a~LAn~G-~~p~tge~vl~~~~ 33 (101)
+=+-+|.+| +||.|++++=-.+.
T Consensus 4 Le~Q~~~gGiidp~tg~~lsv~~A 27 (45)
T PF00681_consen 4 LEAQLATGGIIDPETGERLSVEEA 27 (45)
T ss_dssp HHHHHTTTSEEETTTTEEEEHHHH
T ss_pred eeeeeeeeeEEeCCCCeEEcHHHH
Confidence 456678888 59999998743433
No 53
>COG3588 Fructose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=23.74 E-value=46 Score=27.93 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=23.7
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCCcee
Q psy8041 1 METTCESFSVIAATLANGGICPITEEKV 28 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~p~tge~v 28 (101)
|..||++||+.|+...+.|.-|+-.-.|
T Consensus 153 I~~nv~~la~yAa~cq~aGlVPIVEPEV 180 (332)
T COG3588 153 IKANVHQLAEYAALCQAAGLVPIVEPEV 180 (332)
T ss_pred HHHHHHHHHHHHHHHHHCCCccccccee
Confidence 4678999999999999999999765444
No 54
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.46 E-value=56 Score=22.48 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCCceeechhhHHHHHHHHHhhccccccccceeeecceeec
Q psy8041 3 TTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKS 63 (101)
Q Consensus 3 v~~~dLA~~~a~LAn~G~~p~tge~vl~~~~~r~v~alM~tcGmYd~SG~fa~~VGlPaKS 63 (101)
..|.|.|-+-+.|+..+++-..=|-.=|-...|+-+.+=.+-=.+|.+-.+- .+|+|+-+
T Consensus 10 n~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~g-yiGIPall 69 (85)
T COG4545 10 NLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNG-YIGIPALL 69 (85)
T ss_pred ccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcC-cccceEEE
Confidence 5688999999999999988743333334466677777766777777776665 69999977
No 55
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=22.81 E-value=1.4e+02 Score=25.47 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=33.6
Q ss_pred cccHHHHHHHHHHHhCCCCCCCCCceeech-------hhHHHHHHHHHhhcccccccc
Q psy8041 2 ETTCESFSVIAATLANGGICPITEEKVLRS-------ESVRDVLSLMHSCGMYDYSGQ 52 (101)
Q Consensus 2 ~v~~~dLA~~~a~LAn~G~~p~tge~vl~~-------~~~r~v~alM~tcGmYd~SG~ 52 (101)
-++.+++|.++.-+|-+|+|-+..+..+.. +-++.+...+.-+ ++++|+
T Consensus 146 GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a--~~eTG~ 201 (407)
T PRK09549 146 GRDLDYLKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEV--YETTGH 201 (407)
T ss_pred CCCHHHHHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHH--HHhhCC
Confidence 468999999999999999998877666543 2333333333333 555665
No 56
>PF07020 Orthopox_C10L: Orthopoxvirus C10L protein; InterPro: IPR009748 This family consists of several Orthopoxvirus C10L proteins. C10L viral protein can play an important role in vaccinia virus evasion of the host immune system. It may consist in the blockade of IL-1 receptors by the C10L protein, a homologue of the IL-1 Ra [].
Probab=22.06 E-value=56 Score=22.38 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.6
Q ss_pred ccccccccceeeeccee
Q psy8041 45 GMYDYSGQFAFKVGLPA 61 (101)
Q Consensus 45 GmYd~SG~fa~~VGlPa 61 (101)
+|||.+|+|.-...-|.
T Consensus 8 ~~y~~~G~~kg~a~~pg 24 (83)
T PF07020_consen 8 RMYSHGGMYKGFAHDPG 24 (83)
T ss_pred ceecCCCcEEEEecCCC
Confidence 58999999998888774
No 57
>PF11900 DUF3420: Domain of unknown function (DUF3420); InterPro: IPR024228 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is about 50 amino acids in length.
Probab=20.47 E-value=1.2e+02 Score=18.65 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=26.1
Q ss_pred CCCCCCceeechhhHHHHHHHHHhhcccccc
Q psy8041 20 ICPITEEKVLRSESVRDVLSLMHSCGMYDYS 50 (101)
Q Consensus 20 ~~p~tge~vl~~~~~r~v~alM~tcGmYd~S 50 (101)
.++.+=|.-|+.+.++.+..+=..|++.+.+
T Consensus 2 Ld~i~LeK~LP~eVv~kIk~lR~k~~~~~~~ 32 (49)
T PF11900_consen 2 LDSISLEKELPPEVVKKIKDLRLKSQLDDEP 32 (49)
T ss_pred CcchhhhccCCHHHHHHHHHHHHHcCCCCCC
Confidence 4566778889999999999999999996554
No 58
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=20.17 E-value=2.3e+02 Score=19.37 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=34.1
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCCce----------eechhhHHHHHHHHHh
Q psy8041 1 METTCESFSVIAATLANGGICPITEEK----------VLRSESVRDVLSLMHS 43 (101)
Q Consensus 1 i~v~~~dLA~~~a~LAn~G~~p~tge~----------vl~~~~~r~v~alM~t 43 (101)
|.+|.+|...++..|=..-+|++..+. +-+|++++.++.|+..
T Consensus 29 i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~q 81 (85)
T PF11116_consen 29 ISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQ 81 (85)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 467888888999999999999887643 3478889999888764
Done!