RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8041
(101 letters)
>gnl|CDD|191140 pfam04960, Glutaminase, Glutaminase. This family of enzymes
deaminates glutamine to glutamate EC:3.5.1.2.
Length = 286
Score = 133 bits (338), Expect = 3e-40
Identities = 47/81 (58%), Positives = 62/81 (76%)
Query: 2 ETTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPA 61
E +CE +V+ ATLANGG+ PIT E+V+ + R +L+LM +CGMYD SG FA++VGLPA
Sbjct: 177 EMSCEDLAVMGATLANGGVNPITGERVVSPDVARQILALMLTCGMYDASGDFAYRVGLPA 236
Query: 62 KSGVSGSMLVVVPNTMGIALF 82
KSGV G +L VVP MGIA++
Sbjct: 237 KSGVGGGILAVVPGVMGIAVW 257
>gnl|CDD|234362 TIGR03814, Gln_ase, glutaminase A. This family describes the
enzyme glutaminase, from a larger family that includes
serine-dependent beta-lactamases and penicillin-binding
proteins. Many bacteria have two isozymes. This model is
based on selected known glutaminases and their homologs
within prokaryotes, with the exclusion of highly-derived
(long branch) and architecturally varied homologs, so as
to achieve conservative assignments. A sharp drop in
scores occurs below 250, and cutoffs are set
accordingly. The enzyme converts glutamine to glutamate,
with the release of ammonia. Members tend to be
described as glutaminase A (glsA), where B (glsB) is
unknown and may not be homologous (as in Rhizobium
etli). Some species have two isozymes that may both be
designated A (GlsA1 and GlsA2) [Energy metabolism, Amino
acids and amines].
Length = 300
Score = 115 bits (290), Expect = 6e-33
Identities = 42/82 (51%), Positives = 59/82 (71%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
+E TC + LANGG+ P+T E+V+ +E R + +LM +CG+YD SG+FA++VGLP
Sbjct: 190 IEMTCRDLARAGLFLANGGVNPLTGEQVISAEVARRINALMLTCGLYDASGEFAYRVGLP 249
Query: 61 AKSGVSGSMLVVVPNTMGIALF 82
AKSGV G +L VVP MGIA++
Sbjct: 250 AKSGVGGGILAVVPGKMGIAVW 271
>gnl|CDD|234880 PRK00971, PRK00971, glutaminase; Provisional.
Length = 307
Score = 108 bits (272), Expect = 4e-30
Identities = 41/82 (50%), Positives = 55/82 (67%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
+E +C + LANGG+ P T E+V+ R V +LM +CGMYD SG+FA++VGLP
Sbjct: 197 LEMSCVDLARAGLFLANGGVSPHTGERVVSPRQARQVNALMLTCGMYDASGEFAYRVGLP 256
Query: 61 AKSGVSGSMLVVVPNTMGIALF 82
AKSGV G +L VVP M IA++
Sbjct: 257 AKSGVGGGILAVVPGEMAIAVW 278
>gnl|CDD|224977 COG2066, GlsA, Glutaminase [Amino acid transport and metabolism].
Length = 309
Score = 108 bits (271), Expect = 5e-30
Identities = 40/82 (48%), Positives = 59/82 (71%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
+E C + + LANGG+ P+T E+V+ ++ R + +LM +CGMYD SG+FA++VGLP
Sbjct: 199 IEMNCVDLARLGLFLANGGVNPLTGERVVPADQARQINALMLTCGMYDASGEFAYRVGLP 258
Query: 61 AKSGVSGSMLVVVPNTMGIALF 82
AKSGV G ++ VVP MGIA++
Sbjct: 259 AKSGVGGGIMAVVPGEMGIAVW 280
>gnl|CDD|237073 PRK12356, PRK12356, glutaminase; Reviewed.
Length = 319
Score = 101 bits (255), Expect = 1e-27
Identities = 36/79 (45%), Positives = 53/79 (67%)
Query: 4 TCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKS 63
T + + ATLA GG+ P+T ++V+ +++V +L+ M G+Y+ SG +A+ VGLP KS
Sbjct: 204 TARDLATMGATLAAGGVNPLTGKRVVDADNVPYILAEMTMEGLYERSGDWAYTVGLPGKS 263
Query: 64 GVSGSMLVVVPNTMGIALF 82
GV G +L VVP MGIA F
Sbjct: 264 GVGGGILAVVPGKMGIAAF 282
>gnl|CDD|237074 PRK12357, PRK12357, glutaminase; Reviewed.
Length = 326
Score = 82.5 bits (204), Expect = 2e-20
Identities = 36/74 (48%), Positives = 50/74 (67%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
+E T E ++I LA+ G PI +E+V+ E R +LM +CGMY+ SG+FA VGLP
Sbjct: 206 IEVTTEDIALIGLILAHDGYHPIRKEQVIPKEVARLTKALMLTCGMYNASGKFAAFVGLP 265
Query: 61 AKSGVSGSMLVVVP 74
AKSGVSG ++ +VP
Sbjct: 266 AKSGVSGGIMTLVP 279
>gnl|CDD|217111 pfam02570, CbiC, Precorrin-8X methylmutase. This is a family
Precorrin-8X methylmutases also known as Precorrin
isomerase, CbiC/CobH, EC:5.4.1.2. This enzyme catalyzes
the reaction: Precorrin-8X <=> hydrogenobyrinate. This
enzyme is part of the Cobalamin (vitamin B12)
biosynthetic pathway and catalyzes a methyl
rearrangement.
Length = 198
Score = 27.4 bits (62), Expect = 1.0
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 6 ESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAF 55
ESF++I A L G P E+ V R ++H+ G ++Y+ F
Sbjct: 5 ESFAIIRAELGLHGFSPEEEQVVRR---------VIHATGDFEYADLLRF 45
>gnl|CDD|181352 PRK08285, cobH, precorrin-8X methylmutase; Reviewed.
Length = 208
Score = 27.2 bits (61), Expect = 1.3
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 6 ESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAF 55
+SF+ I A P EKV +VR ++H+CGM D + AF
Sbjct: 14 QSFATIRAEADLSRF-PADLEKV----AVR----MIHACGMVDVADDLAF 54
>gnl|CDD|236420 PRK09229, PRK09229, N-formimino-L-glutamate deiminase; Validated.
Length = 456
Score = 27.1 bits (61), Expect = 1.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 11 IAATLANGGICPITE 25
+A + A G+CP TE
Sbjct: 283 LARSGAVAGLCPTTE 297
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 26.5 bits (59), Expect = 2.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 22 PITEEKVLRSESVRDVLSLMHSCGMYD 48
PIT E VL S + D L L+ C + D
Sbjct: 180 PITVEDVLNSRMIADPLRLLDCCPVSD 206
>gnl|CDD|206533 pfam14365, DUF4409, Domain of unknown function (DUF4409).
Length = 117
Score = 25.7 bits (57), Expect = 2.9
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 8/28 (28%)
Query: 17 NGGICPI--------TEEKVLRSESVRD 36
N G CP T+E +LR+ SV+
Sbjct: 59 NNGECPEGTVPIRRTTKEDLLRASSVKR 86
>gnl|CDD|182237 PRK10094, PRK10094, DNA-binding transcriptional activator AllS;
Provisional.
Length = 308
Score = 25.9 bits (57), Expect = 3.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 77 MGIALFFRTTQNVFVLFVGHRL 98
G+ALFFRTT++V + G L
Sbjct: 44 TGVALFFRTTRSVTLTAAGEHL 65
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 25.8 bits (57), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 22 PITEEKVLRSESVRDVLSLMHSCGMYD 48
+TEE+VL++ + L L CG+ D
Sbjct: 192 AVTEEQVLKAPMIAGPLGLFDCCGVSD 218
>gnl|CDD|180373 PRK06059, PRK06059, lipid-transfer protein; Provisional.
Length = 399
Score = 25.1 bits (55), Expect = 7.9
Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 22 PITEEKVLRSESVRDVLSLMHSCGMYD-------YSGQFAFKVGLPAKSGVS 66
+T E VL S V D L L+ C D S FA + S
Sbjct: 187 EVTVEDVLASPVVSDPLRLLDICATSDGAAALIVASKSFARRHLGSVAGVPS 238
>gnl|CDD|235688 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 24.9 bits (55), Expect = 8.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 22 PITEEKVLRSESVRDVLSLMHSCGMYD 48
IT E+VL S V D L L+ + D
Sbjct: 187 EITVEQVLNSPPVADPLKLLDCSPITD 213
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.137 0.399
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,890,448
Number of extensions: 397302
Number of successful extensions: 444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 21
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)