RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8041
(101 letters)
>3voy_A Glutaminase kidney isoform, mitochondrial; hydrolase; 2.20A {Homo
sapiens} PDB: 3czd_A 3voz_A* 3vp0_A* 3vp1_A* 3vp2_A
3vp3_A 3vp4_A
Length = 315
Score = 109 bits (274), Expect = 7e-31
Identities = 59/82 (71%), Positives = 70/82 (85%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
+E TCES SV+AATLANGG CPIT E+VL E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 202 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 261
Query: 61 AKSGVSGSMLVVVPNTMGIALF 82
AKSGV+G +L+VVPN MG+ +
Sbjct: 262 AKSGVAGGILLVVPNVMGMMCW 283
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 112 bits (280), Expect = 1e-30
Identities = 59/82 (71%), Positives = 70/82 (85%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
+E TCES SV+AATLANGG CPIT E+VL E+VR+ LSLMHSCGMYD+SGQFAF VGLP
Sbjct: 350 IEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMYDFSGQFAFHVGLP 409
Query: 61 AKSGVSGSMLVVVPNTMGIALF 82
AKSGV+G +L+VVPN MG+ +
Sbjct: 410 AKSGVAGGILLVVPNVMGMMCW 431
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI,
protein structure initiat midwest center for structural
genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Length = 310
Score = 105 bits (262), Expect = 4e-29
Identities = 36/82 (43%), Positives = 53/82 (64%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
+ + ATLA GG+ P+T ++VL++++V +L+ M G+Y SG +A++VGLP
Sbjct: 198 TLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLP 257
Query: 61 AKSGVSGSMLVVVPNTMGIALF 82
KSGV G +L VVP MGIA F
Sbjct: 258 GKSGVGGGILAVVPGVMGIAAF 279
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein
structure initiative, riken structural
genomics/proteomics initiative, RSGI; 2.07A {Geobacillus
kaustophilus}
Length = 308
Score = 104 bits (261), Expect = 6e-29
Identities = 36/82 (43%), Positives = 49/82 (59%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
+E TC + I LA G P + E ++ + R + M +CGMY+ SG+FA KVG+P
Sbjct: 198 IEMTCIDLARIGLVLALDGRDPHSSEPLMPLDVARICKTFMVTCGMYNSSGEFAIKVGIP 257
Query: 61 AKSGVSGSMLVVVPNTMGIALF 82
AKSGVSG +L VP GI +F
Sbjct: 258 AKSGVSGGILAAVPGRCGIGVF 279
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase;
2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A
3ih9_A 3iha_A* 3ihb_A 2dfw_A
Length = 456
Score = 103 bits (258), Expect = 8e-28
Identities = 38/82 (46%), Positives = 55/82 (67%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
+ T + +V+ A LA GGI P+T E++L S R V+S+M S GMYD +GQ+ VG+P
Sbjct: 197 VLVTVKDLAVMGACLATGGIHPMTGERMLPSIVARRVVSVMTSSGMYDAAGQWLADVGIP 256
Query: 61 AKSGVSGSMLVVVPNTMGIALF 82
AKSGV+G +L +P +GI +F
Sbjct: 257 AKSGVAGGVLGALPGRVGIGVF 278
>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus
subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* 3agf_A
Length = 330
Score = 99.7 bits (248), Expect = 6e-27
Identities = 34/84 (40%), Positives = 53/84 (63%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
ME+T E ++I LA+ G PI E+V+ + + +LM +CGMY+ SG++A VG+P
Sbjct: 210 MESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNASGKYAAFVGVP 269
Query: 61 AKSGVSGSMLVVVPNTMGIALFFR 84
AKSGVSG ++ +VP + F+
Sbjct: 270 AKSGVSGGIMALVPPSARREQPFQ 293
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.051
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 19/80 (23%)
Query: 3 TTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAF-KVGLPA 61
T V A +A + E SVR ++++ G A+ LP
Sbjct: 271 TGHSQGLVTAVAIAETD----SWESFF--VSVRKAITVLFFIG---VRCYEAYPNTSLPP 321
Query: 62 KS---------GVSGSMLVV 72
GV ML +
Sbjct: 322 SILEDSLENNEGVPSPMLSI 341
Score = 30.8 bits (69), Expect = 0.054
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 30/81 (37%)
Query: 27 KVLRSESVRDVLSLM--HSCGMYDYS---------------------G---QFAFKVGLP 60
+ L+S+ + + HS G +Y+ G Q A
Sbjct: 1745 EDLKSKGLIPADATFAGHSLG--EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 61 AKSGVSGSMLVVVPNTMGIAL 81
+S M+ + P + +
Sbjct: 1803 GRSNYG--MIAINPGRVAASF 1821
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.9 bits (64), Expect = 0.23
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 6 ESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYD-----YSGQFAFKVGLP 60
E F IA L I + E + V L C +D Y QF FK
Sbjct: 169 EPFENIAIELPPNEI--LFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQAEQ 226
Query: 61 AKSGV 65
++ V
Sbjct: 227 EQADV 231
>1f2v_A COBH, precorrin-8X methylmutase; alpha-beta WIND, doubly wound
sheet, isomerase; 2.10A {Pseudomonas denitrificans}
SCOP: c.23.17.1 PDB: 1i1h_A*
Length = 219
Score = 26.9 bits (59), Expect = 1.1
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
Query: 1 METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFK 56
SF++I A + +R ++H+CG + + QF F
Sbjct: 20 NAIYERSFAIIRAEADLSRFSEEEADLAVR---------MVHACGSVEATRQFVFS 66
>1v9c_A Precorrin-8X methyl mutase; alpha-beta WIND, doubly wound sheet,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; 2.20A {Thermus thermophilus} SCOP:
c.23.17.1
Length = 218
Score = 26.9 bits (59), Expect = 1.2
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 6 ESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVG 58
ESF ++ G P+ V R ++H+ ++Y F G
Sbjct: 11 ESFRIVDQEAGPHGFSPLEWPVVRR---------MIHATADFEYKALTRFSQG 54
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 103
Score = 26.0 bits (57), Expect = 1.3
Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 21/76 (27%)
Query: 29 LRSESVRDVLSLMHSCGMYDYSGQFAFKVGLPAKSGVSGSMLVVVPNT----MGIALFFR 84
++ V S + G + + ++ ++G++L + + +G++
Sbjct: 27 YKTWGPEQVCSFLRRGGFEEPVLLKNIR-----ENEITGALLPCLDESRFENLGVSSL-- 79
Query: 85 TTQNVFVLFVGHRLKI 100
G R K+
Sbjct: 80 ----------GERKKL 85
>2afr_A Cobalamin biosynthesis precorrin isomerase; 2.30A {Leptospira
interrogans} PDB: 2afv_A*
Length = 231
Score = 26.1 bits (57), Expect = 1.8
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 9/53 (16%)
Query: 6 ESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVG 58
+SFS+I E V R ++H+ +DY
Sbjct: 17 KSFSIIDEEAGPHSFAQEEWEVVRR---------IIHATADFDYKNITKIHPQ 60
>3e7d_A COBH, precorrin-8X methylmutase; ssgcid, decode, braba00006A,
structural genomics, seattle ST genomics center for
infectious disease; 1.80A {Brucella abortus}
Length = 212
Score = 26.1 bits (57), Expect = 1.8
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 6 ESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFK 56
SF++I A I E+ +R ++H+CGM D + AF
Sbjct: 18 RSFAIIRAEADLRHIPADLEKLAVR---------VIHACGMVDVANDLAFS 59
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.0 bits (57), Expect = 3.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 61 AKSGVSGSMLVVVPNTMG 78
AK G GS L+VVP G
Sbjct: 524 AKYGAKGSTLIVVPFNQG 541
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase,
translation; 3.40A {Homo sapiens} SCOP: a.173.1.1
d.218.1.4
Length = 448
Score = 25.2 bits (55), Expect = 4.1
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 23 ITEE--KVLRSESVRDVLSLMHSCGMYDY 49
I E K+L V ++ L++ + Y
Sbjct: 252 IWVELKKILVGNHVNHLIHLIYDLDVAPY 280
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein,
gene regulation; 2.90A {Aquifex aeolicus} SCOP:
b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Length = 706
Score = 25.1 bits (54), Expect = 5.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 20 ICPITEEKVLRSESVRDVLSLMHS 43
+ P EKVL+SE +L L
Sbjct: 137 LIPEVNEKVLKSEEGYFLLHLDLK 160
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.399
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,441,059
Number of extensions: 71483
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 18
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)