RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8041
         (101 letters)



>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli
           [TaxId: 562]}
          Length = 309

 Score =  118 bits (297), Expect = 1e-34
 Identities = 36/82 (43%), Positives = 53/82 (64%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
                   + + ATLA GG+ P+T ++VL++++V  +L+ M   G+Y  SG +A++VGLP
Sbjct: 197 TLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLP 256

Query: 61  AKSGVSGSMLVVVPNTMGIALF 82
            KSGV G +L VVP  MGIA F
Sbjct: 257 GKSGVGGGILAVVPGVMGIAAF 278


>d1mkia_ e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus subtilis
           [TaxId: 1423]}
          Length = 328

 Score =  109 bits (275), Expect = 3e-31
 Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 10/92 (10%)

Query: 1   METTCESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAFKVGLP 60
           ME+T E  ++I   LA+ G  PI  E+V+  +  +   +LM +CGMY+ SG++A  VG+P
Sbjct: 208 MESTTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKALMLTCGMYNASGKYAAFVGVP 267

Query: 61  AKSGVSGSMLVVVP----------NTMGIALF 82
           AKSGVSG ++ +VP          +  GI ++
Sbjct: 268 AKSGVSGGIMALVPPSARREQPFQSGCGIGIY 299


>d1f2va_ c.23.17.1 (A:) Precorrin-8x methylmutase {Pseudomonas
          denitrificans [TaxId: 43306]}
          Length = 209

 Score = 28.2 bits (63), Expect = 0.13
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 9/50 (18%)

Query: 6  ESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAF 55
           SF++I A            +  +R         ++H+CG  + + QF F
Sbjct: 15 RSFAIIRAEADLSRFSEEEADLAVR---------MVHACGSVEATRQFVF 55


>d1v9ca_ c.23.17.1 (A:) Precorrin-8x methylmutase {Thermus
          thermophilus [TaxId: 274]}
          Length = 204

 Score = 27.5 bits (61), Expect = 0.25
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 9/50 (18%)

Query: 6  ESFSVIAATLANGGICPITEEKVLRSESVRDVLSLMHSCGMYDYSGQFAF 55
          ESF ++       G  P+    V R         ++H+   ++Y     F
Sbjct: 6  ESFRIVDQEAGPHGFSPLEWPVVRR---------MIHATADFEYKALTRF 46


>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 322

 Score = 24.4 bits (53), Expect = 3.5
 Identities = 0/33 (0%), Positives = 12/33 (36%), Gaps = 3/33 (9%)

Query: 27  KVLRSESVRDVLS-LMHSCGMYDYSGQFAFKVG 58
           ++   +++ ++++         ++       + 
Sbjct: 147 QIQSMKTLWELVNKDPKELE--EFLMTHKENLM 177


>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core,
           domain 1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 200

 Score = 23.4 bits (50), Expect = 5.5
 Identities = 6/17 (35%), Positives = 7/17 (41%)

Query: 68  SMLVVVPNTMGIALFFR 84
             LV VP    I+  F 
Sbjct: 118 YSLVSVPEGNDISSIFE 134


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 340,414
Number of extensions: 12744
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 7
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)