BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8042
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E5A|A Chain A, Crystal Structure Of Bovine Lipoyltransferase In Complex
With Lipoyl-Amp
pdb|3A7U|A Chain A, Crystal Structure Of The Bovine Lipoyltransferase In Its
Unliganded Form
Length = 347
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Query: 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLS-------QSLHHHAINSCPEDLVKTL 48
ISGTA+K+GR ++YHHCTLL + + LS Q + +A S P LVK L
Sbjct: 136 ISGTASKIGRNAAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPA-LVKNL 189
>pdb|3A7A|A Chain A, Crystal Structure Of E. Coli Lipoate-protein Ligase A In
Complex With Octyl-amp And Apoh-protein
pdb|3A7A|C Chain C, Crystal Structure Of E. Coli Lipoate-protein Ligase A In
Complex With Octyl-amp And Apoh-protein
pdb|3A7R|A Chain A, Crystal Structure Of E. Coli Lipoate-Protein Ligase A In
Complex With Lipoyl-Amp
Length = 337
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLH 33
+SG+A + + +HH TLL+N + SRL+ L+
Sbjct: 134 VSGSAYRETKDRGFHHGTLLLNADLSRLANYLN 166
>pdb|1X2G|A Chain A, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli
pdb|1X2G|B Chain B, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli
pdb|1X2G|C Chain C, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli
pdb|1X2H|A Chain A, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli Complexed With Lipoic Acid
pdb|1X2H|B Chain B, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli Complexed With Lipoic Acid
pdb|1X2H|C Chain C, Crystal Structure Of Lipate-Protein Ligase A From
Escherichia Coli Complexed With Lipoic Acid
Length = 337
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLH 33
+SG+A + + +HH TLL+N + SRL+ L+
Sbjct: 134 VSGSAYRETKDRGFHHGTLLLNADLSRLANYLN 166
>pdb|1ZBQ|A Chain A, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|B Chain B, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|C Chain C, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|D Chain D, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|E Chain E, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|F Chain F, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
Length = 327
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKSFILDLIGW 59
++ + A GR S+ H T+ N SR++Q++ PEDLV+ L ++ L+ W
Sbjct: 195 LANSLAIEGRKSNIHCNTIAPNAG-SRMTQTV-------MPEDLVEALKPEYVAPLVLW 245
>pdb|3TQW|A Chain A, Structure Of A Abc Transporter, Periplasmic
Substrate-Binding Protein From Coxiella Burnetii
pdb|3TQW|B Chain B, Structure Of A Abc Transporter, Periplasmic
Substrate-Binding Protein From Coxiella Burnetii
Length = 240
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 4 TAAKLGRPSS-YHHCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKSFILDLIGWQ-- 60
T AK+ PS + L+ + K++L Q H IN+ P D+ K I++L Q
Sbjct: 101 TGAKIAVPSDPSNEARALLLLEKAQLIQLKTHVTINATPXDIASNPKKLKIVELDAAQLS 160
Query: 61 RSFSDL 66
RS D+
Sbjct: 161 RSLGDV 166
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila
3,4-Dihydroxyphenylalanine Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila
3,4-Dihydroxyphenylalanine Decarboxylase
Length = 475
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 59 WQRSFSDLVKWIRLPMTNWISPTFH 83
WQ D+ + I +T+W SP FH
Sbjct: 53 WQDVMQDIERVIMPGVTHWHSPKFH 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,940,821
Number of Sequences: 62578
Number of extensions: 90912
Number of successful extensions: 216
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 7
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)