Query psy8042
Match_columns 90
No_of_seqs 102 out of 155
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 16:56:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3159|consensus 99.4 9.1E-14 2E-18 112.3 3.3 50 1-50 142-198 (336)
2 PRK03822 lplA lipoate-protein 99.3 7.6E-13 1.6E-17 104.7 4.5 56 1-56 135-208 (338)
3 PRK14061 unknown domain/lipoat 99.3 2.3E-12 4.9E-17 109.1 4.5 56 1-56 359-432 (562)
4 TIGR00545 lipoyltrans lipoyltr 99.2 1.3E-11 2.9E-16 96.8 4.6 58 1-58 133-208 (324)
5 COG0095 LplA Lipoate-protein l 98.9 1.3E-09 2.8E-14 82.2 4.1 34 1-34 138-171 (248)
6 PF13124 DUF3963: Protein of u 87.2 0.42 9.2E-06 28.8 1.6 12 60-71 10-21 (40)
7 PRK12557 H(2)-dependent methyl 55.0 6.7 0.00014 31.4 1.3 56 19-74 247-303 (342)
8 KOG2040|consensus 51.4 15 0.00033 34.1 3.0 34 37-71 555-592 (1001)
9 PF07145 PAM2: Ataxin-2 C-term 42.6 13 0.00028 18.9 0.7 14 29-42 3-16 (18)
10 PF15342 FAM212: FAM212 family 40.5 16 0.00034 24.0 1.0 14 61-74 46-60 (62)
11 PF11585 Stomoxyn: Insect anti 36.2 29 0.00063 21.0 1.7 24 58-85 2-25 (42)
12 KOG1234|consensus 33.2 41 0.00089 28.4 2.7 48 21-68 89-144 (363)
13 PF04383 KilA-N: KilA-N domain 33.1 10 0.00022 25.0 -0.7 15 72-86 87-101 (111)
14 PF05372 Delta_lysin: Delta ly 32.9 23 0.0005 19.5 0.8 9 63-71 9-17 (25)
15 PF03135 CagE_TrbE_VirB: CagE, 26.9 54 0.0012 23.5 2.1 22 12-33 146-168 (205)
16 COG1003 GcvP Glycine cleavage 25.1 80 0.0017 27.8 3.1 19 53-71 101-119 (496)
17 PF07055 Eno-Rase_FAD_bd: Enoy 25.0 41 0.00089 21.8 1.1 24 42-67 29-52 (65)
18 PRK14752 delta-hemolysin; Prov 21.9 46 0.00099 20.4 0.8 17 52-71 19-35 (44)
19 PF10593 Z1: Z1 domain; Inter 21.1 25 0.00055 26.8 -0.6 23 3-25 13-35 (239)
No 1
>KOG3159|consensus
Probab=99.42 E-value=9.1e-14 Score=112.27 Aligned_cols=50 Identities=44% Similarity=0.642 Sum_probs=43.1
Q ss_pred CcccceeccCCeeeEeeeeeeecChHHHhhhccC-------CccCcCCcchHHHHHH
Q psy8042 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH-------HAINSCPEDLVKTLSK 50 (90)
Q Consensus 1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~-------N~~~svp~~tVenL~e 50 (90)
||||||||+|++||||||||+|+|++.|+.+|+| +.+.++|+-.|+++.+
T Consensus 142 iSGtA~kI~r~raYHH~T~L~~aDl~~ls~lL~sp~~~~~s~at~sv~sp~vk~lie 198 (336)
T KOG3159|consen 142 ISGTAYKIARNRAYHHCTMLLNADLENLSELLKSPRVNIRSKATSSVRSPRVKNLIE 198 (336)
T ss_pred eccchhhhcCCceeeeEEeEeccchHHHHhhccCCCCCccccccccccchhhhhhhh
Confidence 7999999999999999999999999999999998 5667777545666643
No 2
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=99.35 E-value=7.6e-13 Score=104.72 Aligned_cols=56 Identities=25% Similarity=0.370 Sum_probs=47.9
Q ss_pred CcccceeccCCeeeEeeeeeeecChHHHhhhccC------------------CccCcCCcchHHHHHHHHHHHH
Q psy8042 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH------------------HAINSCPEDLVKTLSKSFILDL 56 (90)
Q Consensus 1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~------------------N~~~svp~~tVenL~e~l~~df 56 (90)
||||||+..+++.|||||||+|+|++.|.++|++ |+++.+|+++++++++.+.+.|
T Consensus 135 isGsAq~~~~~~~l~HGTlL~~~d~~~l~~~L~~~~~k~~skgv~Sv~srVtnl~~~~~~~~~e~~~~~l~~~f 208 (338)
T PRK03822 135 VSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLQAKGITSVRSRVTNLTELLPGITHEQVCEAITEAF 208 (338)
T ss_pred EEEEeeeeeCCeEEEEEEEEecCCHHHHHHHhCCChhhhhhccccchHhhhccHHHhCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999997 4455556677777777777766
No 3
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=99.29 E-value=2.3e-12 Score=109.05 Aligned_cols=56 Identities=25% Similarity=0.364 Sum_probs=49.7
Q ss_pred CcccceeccCCeeeEeeeeeeecChHHHhhhccC------------------CccCcCCcchHHHHHHHHHHHH
Q psy8042 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH------------------HAINSCPEDLVKTLSKSFILDL 56 (90)
Q Consensus 1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~------------------N~~~svp~~tVenL~e~l~~df 56 (90)
|||||+++.++++|||||||+|+|++.|.++|+| |++++.|+++++++++.+.+.|
T Consensus 359 ISGsAq~~~~~~~lhHGTLL~d~dl~~L~~~L~~~~~Kl~sKgvkSVrsRVtNL~e~l~~it~e~f~~~L~~~f 432 (562)
T PRK14061 359 VSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGIPHEQVCEAITEAF 432 (562)
T ss_pred EEEEeEEEeCCeEEEEEEEEecCCHHHHHHHhCCCchhhhhhhhhhHHhhceeHHHhCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999998 4566666677888888887777
No 4
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=99.21 E-value=1.3e-11 Score=96.80 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=49.4
Q ss_pred CcccceeccCCeeeEeeeeeeecChHHHhhhccC------------------CccCcCCcchHHHHHHHHHHHHHH
Q psy8042 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH------------------HAINSCPEDLVKTLSKSFILDLIG 58 (90)
Q Consensus 1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~------------------N~~~svp~~tVenL~e~l~~df~~ 58 (90)
|||||++..+++.+||||||+|+|++.|.++|++ |+++..|+++++++.+.+++.|..
T Consensus 133 isGsAq~~~~~~~l~HGtlL~~~d~~~l~~~L~~~~~k~~skgv~sv~~rv~nl~~~l~~~~~e~~~~~l~~~f~~ 208 (324)
T TIGR00545 133 ISGSAYYITKDRGFHHGTLLFDADLSKLAKYLNVDKTKIESKGITSVRSRVVNVKEYLPNITTEQFLEEMTQAFFT 208 (324)
T ss_pred EEEEeeeeeCCEEEEEEEEEccCCHHHHHHhcCCChhhhHhhcccchhhhcccHHHhCCCCCHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999997 455556666788888887776643
No 5
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=98.90 E-value=1.3e-09 Score=82.15 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=33.2
Q ss_pred CcccceeccCCeeeEeeeeeeecChHHHhhhccC
Q psy8042 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH 34 (90)
Q Consensus 1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~ 34 (90)
|||+||+..+++.+||||||++.|++.|.++|++
T Consensus 138 isG~Aq~~~~~~~l~hgtll~~~d~~~l~~~l~~ 171 (248)
T COG0095 138 ISGSAQRRTKGRILHHGTLLLDIDLELLARVLRV 171 (248)
T ss_pred EeeHHHHhhCCcEEEEEEEEEeCCHHHHHHHhCC
Confidence 7999999999999999999999999999999997
No 6
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=87.24 E-value=0.42 Score=28.80 Aligned_cols=12 Identities=58% Similarity=1.223 Sum_probs=11.0
Q ss_pred HHhHHHHHHhhh
Q psy8042 60 QRSFSDLVKWIR 71 (90)
Q Consensus 60 ~~~f~d~~~~~~ 71 (90)
.+.|+|+-||||
T Consensus 10 eryfddiqkwir 21 (40)
T PF13124_consen 10 ERYFDDIQKWIR 21 (40)
T ss_pred HHHHHHHHHHHH
Confidence 578999999998
No 7
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=55.04 E-value=6.7 Score=31.41 Aligned_cols=56 Identities=18% Similarity=0.062 Sum_probs=40.4
Q ss_pred eeeecChHHHhhhccCC-ccCcCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhhhcc
Q psy8042 19 LLVNVNKSRLSQSLHHH-AINSCPEDLVKTLSKSFILDLIGWQRSFSDLVKWIRLPM 74 (90)
Q Consensus 19 LLv~~Dl~~L~~~L~~N-~~~svp~~tVenL~e~l~~df~~~~~~f~d~~~~~~~~~ 74 (90)
|+-.++++.|.+.|+|. +..+..++..-+..+.+-.++.-+.+.+.|++||++=-+
T Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (342)
T PRK12557 247 LVETSGVDGLLKALNPELLLRSASSMHLLEKQKDLDAALEILENLDEDLLKEIEEAE 303 (342)
T ss_pred HHHHhChHHHHHhcCHHHHhhhHhhCCcchhhhhHHHHHHHHHHHHHHHhhccccCc
Confidence 45678899999999995 344444454555556666666778888999999998544
No 8
>KOG2040|consensus
Probab=51.41 E-value=15 Score=34.10 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=23.2
Q ss_pred cCcCCcchHHHHHH----HHHHHHHHHHHhHHHHHHhhh
Q psy8042 37 INSCPEDLVKTLSK----SFILDLIGWQRSFSDLVKWIR 71 (90)
Q Consensus 37 ~~svp~~tVenL~e----~l~~df~~~~~~f~d~~~~~~ 71 (90)
+|..| +|-.+|.. +-.++.-|||++|.||-||+-
T Consensus 555 tEmmP-iTwp~fanIHPF~P~eQaqGY~~lf~~Le~~Lc 592 (1001)
T KOG2040|consen 555 TEMMP-ITWPEFANIHPFAPVEQAQGYQQLFTELEKDLC 592 (1001)
T ss_pred ceecc-ccchhhccCCCCCchHHHhhHHHHHHHHHHHhh
Confidence 34445 55555432 126777899999999999973
No 9
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=42.65 E-value=13 Score=18.94 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=10.9
Q ss_pred hhhccCCccCcCCc
Q psy8042 29 SQSLHHHAINSCPE 42 (90)
Q Consensus 29 ~~~L~~N~~~svp~ 42 (90)
..-||||+.+++|.
T Consensus 3 ~s~LNp~A~eFvP~ 16 (18)
T PF07145_consen 3 SSKLNPNAPEFVPS 16 (18)
T ss_dssp SSSSSTTSSSS-TT
T ss_pred ccccCCCCccccCC
Confidence 45799999999994
No 10
>PF15342 FAM212: FAM212 family
Probab=40.54 E-value=16 Score=23.97 Aligned_cols=14 Identities=50% Similarity=1.063 Sum_probs=10.7
Q ss_pred HhHHHHHH-hhhhcc
Q psy8042 61 RSFSDLVK-WIRLPM 74 (90)
Q Consensus 61 ~~f~d~~~-~~~~~~ 74 (90)
+.|.|||+ |+.||-
T Consensus 46 N~FADLV~NWlDLPE 60 (62)
T PF15342_consen 46 NVFADLVGNWLDLPE 60 (62)
T ss_pred cHHHHHHHhhhcCcc
Confidence 56889985 888874
No 11
>PF11585 Stomoxyn: Insect antimicrobial peptide, stomoxyn; InterPro: IPR021037 Stomoxyn is an insect antimicrobial peptide localised in the gut epithelium, which functions in killing a range of microorganisms, parasites and some viruses. In water, stomoxyn has a flexible random coil in structure, while in trifluoroethanol it adopts a stable helical structure. Structural similarities to the antimicrobial peptide cecropin A from Hyalophora cecropia suggest that it may function in a similar manner by disrupting the bacterial membrane []. ; PDB: 1ZRX_A.
Probab=36.21 E-value=29 Score=21.00 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=16.5
Q ss_pred HHHHhHHHHHHhhhhcccccCCcccccc
Q psy8042 58 GWQRSFSDLVKWIRLPMTNWISPTFHVP 85 (90)
Q Consensus 58 ~~~~~f~d~~~~~~~~~~~~~~~~~~~~ 85 (90)
|||++|..++|=|.- -||.|-||.
T Consensus 2 ~frk~fn~~ikkikh----tisetahva 25 (42)
T PF11585_consen 2 SFRKHFNRFIKKIKH----TISETAHVA 25 (42)
T ss_dssp --HHHHHHHHHHHHH----HHHHHHTHH
T ss_pred cHHHHHHHHHHHHHh----hhHHHHHhh
Confidence 799999999998764 356666653
No 12
>KOG1234|consensus
Probab=33.25 E-value=41 Score=28.38 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=30.8
Q ss_pred eecChHHHhhhccC-Cc--cCcCCcchHHHHHHHH--HHHH---HHHHHhHHHHHH
Q psy8042 21 VNVNKSRLSQSLHH-HA--INSCPEDLVKTLSKSF--ILDL---IGWQRSFSDLVK 68 (90)
Q Consensus 21 v~~Dl~~L~~~L~~-N~--~~svp~~tVenL~e~l--~~df---~~~~~~f~d~~~ 68 (90)
+++|+++|.++||- ++ ++.-.+-.++..+..| -+|. -+..+.|++|.+
T Consensus 89 I~SD~~nl~~lLn~s~llPkGLFLd~~i~~ArkEL~~ECDYqrEA~~~~kFr~LLs 144 (363)
T KOG1234|consen 89 IDSDANNLSRLLNFSGLLPKGLFLDVLIEVARKELKWECDYQREAASALKFRPLLS 144 (363)
T ss_pred ccCcHHHHHHHHhhcccccccccHHHHHHHHHHhcccccchHHHHHHHhhhHHHhc
Confidence 68999999999985 21 2333344455554444 2223 478888999987
No 13
>PF04383 KilA-N: KilA-N domain; InterPro: IPR018004 The amino-terminal module of the poxvirus D6R/NIR proteins defines a novel conserved DNA-binding domain (the KilA-N domain) that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses []. Putative proteins with homology to the KilA-N domain have also been identified in Maverick transposable elements of the parabasalid protozoa Trichomonas vaginalis []. The KilA-N domain has been suggested to be homologous to the fungal DNA-binding APSES domain (see PDOC51299 from PROSITEDOC). In all proteins shown to contain the KilA-N domain, it occurs at the extreme amino terminus accompanied by a wide range of distinct carboxy-terminal domains. These carboxy-terminal modules may be enzymes, such as the nuclease domains, or might mediate additional, specific interactions with nucleic acids or proteins, like the RING (see PDOC00449 from PROSITEDOC) or CCCH fingers in the poxviruses []. The KilA-N domain is predicted to adopt an alpha-beta fold with four conserved strands and at least two conserved helices []. Some proteins known to contain a KilA-N domain are listed below: Bacteriophage P1 protein kilA (P19653 from SWISSPROT). Fowlpox virus (FPV) protein FPV236 (P14365 from SWISSPROT). Trichomonas vaginalis G3 Putative uncharacterised protein (A2D8C0 from SWISSPROT). Vaccinia virus hypothetical 21.7 kDa HindIII-C protein (P17366 from SWISSPROT). ; PDB: 1MB1_A 1L3G_A 1BM8_A.
Probab=33.06 E-value=10 Score=24.96 Aligned_cols=15 Identities=33% Similarity=0.855 Sum_probs=2.7
Q ss_pred hcccccCCccccccc
Q psy8042 72 LPMTNWISPTFHVPI 86 (90)
Q Consensus 72 ~~~~~~~~~~~~~~~ 86 (90)
+....||||.|++-+
T Consensus 87 ~~~a~WiSp~f~~~v 101 (111)
T PF04383_consen 87 IHYAMWISPKFALKV 101 (111)
T ss_dssp HHHHH----------
T ss_pred HHHHHhccccccccc
Confidence 345579999998643
No 14
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=32.86 E-value=23 Score=19.48 Aligned_cols=9 Identities=44% Similarity=0.578 Sum_probs=6.8
Q ss_pred HHHHHHhhh
Q psy8042 63 FSDLVKWIR 71 (90)
Q Consensus 63 f~d~~~~~~ 71 (90)
.-|+||||-
T Consensus 9 IgdfvKlI~ 17 (25)
T PF05372_consen 9 IGDFVKLII 17 (25)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 358899984
No 15
>PF03135 CagE_TrbE_VirB: CagE, TrbE, VirB family, component of type IV transporter system; InterPro: IPR018145 This domain is found in (amongst others): the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration []. Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro []. Similar type IV transport systems are also found in other bacteria. This domain is also found in proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding
Probab=26.90 E-value=54 Score=23.50 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=16.6
Q ss_pred eeeEeeeeeeecC-hHHHhhhcc
Q psy8042 12 SSYHHCTLLVNVN-KSRLSQSLH 33 (90)
Q Consensus 12 ~aYHHgTLLv~~D-l~~L~~~L~ 33 (90)
-+|||+|++|-.| ++.|.+..+
T Consensus 146 ~G~~~~~i~v~~~~~~~l~~~~~ 168 (205)
T PF03135_consen 146 FGYYHFTIVVFADDPEELDDKVA 168 (205)
T ss_pred eeeeEEEEEEEcCCHHHHHHHHH
Confidence 5899999999875 666665544
No 16
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=25.12 E-value=80 Score=27.76 Aligned_cols=19 Identities=16% Similarity=0.490 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHHHHhhh
Q psy8042 53 ILDLIGWQRSFSDLVKWIR 71 (90)
Q Consensus 53 ~~df~~~~~~f~d~~~~~~ 71 (90)
.++.-||++++.||-+|+.
T Consensus 101 e~~vqG~l~li~~Lq~~L~ 119 (496)
T COG1003 101 EEQVQGYLELIYELQEWLK 119 (496)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4566799999999999986
No 17
>PF07055 Eno-Rase_FAD_bd: Enoyl reductase FAD binding domain; InterPro: IPR010758 This family contains a number of bacterial putative reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3S8M_A 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A.
Probab=24.99 E-value=41 Score=21.83 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHH
Q psy8042 42 EDLVKTLSKSFILDLIGWQRSFSDLV 67 (90)
Q Consensus 42 ~~tVenL~e~l~~df~~~~~~f~d~~ 67 (90)
.++-+|+++ +.++.||++.|-.|-
T Consensus 29 ~it~en~~e--l~D~~gy~~eFl~L~ 52 (65)
T PF07055_consen 29 QITTENFKE--LGDYDGYRQEFLQLF 52 (65)
T ss_dssp CT-CCCHHH--HS-HHHHHHHHHHHT
T ss_pred HhccccHHH--HHhHHHHHHHHHHHc
Confidence 355556655 677789999997663
No 18
>PRK14752 delta-hemolysin; Provisional
Probab=21.86 E-value=46 Score=20.36 Aligned_cols=17 Identities=47% Similarity=0.884 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhHHHHHHhhh
Q psy8042 52 FILDLIGWQRSFSDLVKWIR 71 (90)
Q Consensus 52 l~~df~~~~~~f~d~~~~~~ 71 (90)
+..|++| -.-|+||||-
T Consensus 19 ma~dii~---tig~~vk~ii 35 (44)
T PRK14752 19 MAQDIIS---TIGDLVKWII 35 (44)
T ss_pred HHHHHHH---HHHHHHHHHH
Confidence 3445543 3458999984
No 19
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=21.09 E-value=25 Score=26.83 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=19.4
Q ss_pred ccceeccCCeeeEeeeeeeecCh
Q psy8042 3 GTAAKLGRPSSYHHCTLLVNVNK 25 (90)
Q Consensus 3 GSA~ki~~~~aYHHgTLLv~~Dl 25 (90)
++|.+..++...-|++|||++..
T Consensus 13 ~~Air~~rg~~~~~~SMLIH~S~ 35 (239)
T PF10593_consen 13 ACAIRRLRGQGNKHNSMLIHTSR 35 (239)
T ss_pred HHHHHHHhCCCCCCceeEEECcc
Confidence 56778888888899999999875
Done!