Query psy8042
Match_columns 90
No_of_seqs 102 out of 155
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 16:56:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e5a_A Lipoyltransferase 1; li 99.0 1.7E-10 5.9E-15 88.9 4.0 56 1-56 136-209 (347)
2 3a7r_A Lipoate-protein ligase 99.0 3.2E-10 1.1E-14 87.1 5.3 56 1-56 134-207 (337)
3 2c8m_A Lipoate-protein ligase 98.9 1.4E-09 4.6E-14 80.2 5.0 55 1-56 146-218 (262)
4 1vqz_A Lipoate-protein ligase, 98.9 1.3E-09 4.5E-14 84.3 5.0 56 1-56 143-217 (341)
5 2p5i_A BH3822 protein; PFAM030 98.6 3.1E-08 1E-12 74.3 3.4 35 1-35 163-205 (288)
6 2p0l_A Lipoate-protein ligase 98.6 3.7E-08 1.3E-12 74.0 3.8 34 1-34 162-203 (288)
7 2qhs_A Lipoyltransferase; glob 98.2 1.6E-06 5.5E-11 63.9 4.8 56 1-56 157-221 (237)
8 1w66_A Lipoyltransferase; lipo 96.0 0.008 2.8E-07 44.5 4.6 56 1-56 145-209 (232)
9 2k8f_B Cellular tumor antigen 51.1 7.4 0.00025 22.5 1.6 20 60-81 16-35 (39)
10 3dac_P Cellular tumor antigen 41.5 8.5 0.00029 19.7 0.7 18 62-81 2-19 (21)
11 1no4_A Late, head morphogenesi 33.9 43 0.0015 22.4 3.4 39 26-68 9-47 (97)
12 3uul_A Utrophin; spectrin repe 30.8 27 0.00094 20.9 2.0 16 56-71 4-19 (118)
13 2l14_B Cellular tumor antigen 30.5 26 0.00088 21.1 1.7 22 60-83 4-25 (49)
14 1dtc_A Acetyl-delta-toxin; NMR 30.2 17 0.00059 19.4 0.8 9 63-71 9-17 (26)
15 1zrx_A Stomoxyn; helical pepti 28.7 18 0.00063 21.0 0.8 24 58-85 2-25 (42)
16 2odv_A Plectin 1, HD1; plakin 27.2 17 0.00059 26.6 0.6 26 57-82 14-39 (235)
17 3uun_A Dystrophin; triple heli 21.7 66 0.0023 19.0 2.5 16 56-71 4-19 (119)
18 1uj8_A ORF3, hypothetical prot 21.6 34 0.0012 22.2 1.2 29 43-71 17-48 (77)
19 3mhs_B Protein SUS1; multi-pro 20.7 37 0.0013 22.1 1.2 31 22-52 55-85 (96)
20 1jgn_B PAIP2, polyadenylate-bi 20.3 32 0.0011 18.2 0.7 16 30-45 4-19 (26)
No 1
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=99.01 E-value=1.7e-10 Score=88.86 Aligned_cols=56 Identities=38% Similarity=0.571 Sum_probs=45.8
Q ss_pred CcccceeccCCeeeEeeeeeeecChHHHhhhccCC-------ccCcC-----------CcchHHHHHHHHHHHH
Q psy8042 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH-------AINSC-----------PEDLVKTLSKSFILDL 56 (90)
Q Consensus 1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~N-------~~~sv-----------p~~tVenL~e~l~~df 56 (90)
|||+|+++.+++.|||||||+|+|++.|.++|+++ ...|+ |+++++++++.+.+.|
T Consensus 136 IsG~Aq~~~~~~~lhhgtll~~~d~~~l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~~~~~~~~~~v~~~l~~~f 209 (347)
T 2e5a_A 136 ISGTASKIGRNAAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEY 209 (347)
T ss_dssp EECEEEEECSSCEEEEEEEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHH
T ss_pred EEEEeEEeeCCeEEEEEEEEEecCHHHHHHHHccCchhhhhhcccchHHhhccHHHhCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999963 12223 3467777777777766
No 2
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=99.00 E-value=3.2e-10 Score=87.07 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=47.3
Q ss_pred CcccceeccCCeeeEeeeeeeecChHHHhhhccCC------------------ccCcCCcchHHHHHHHHHHHH
Q psy8042 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH------------------AINSCPEDLVKTLSKSFILDL 56 (90)
Q Consensus 1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~N------------------~~~svp~~tVenL~e~l~~df 56 (90)
|||+|+++.+++.|||||||+|+|++.|.++|+++ +.+..+.++++++++.+.+.|
T Consensus 134 IsG~Aqr~~~~~~lhhgtll~~~dl~~l~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~~~~~~~v~~~l~~~f 207 (337)
T 3a7r_A 134 VSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAF 207 (337)
T ss_dssp EEEEEEEECSSEEEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEEEECCEEEEEEEEEecCCHHHHHHHhcCChhhhhhcCCCchhhheeEHHHhCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999952 233344578888888887776
No 3
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=98.90 E-value=1.4e-09 Score=80.19 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=44.4
Q ss_pred CcccceeccCCeeeEeeeeeeecChHHHhhhccCC------------------ccCcCCcchHHHHHHHHHHHH
Q psy8042 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH------------------AINSCPEDLVKTLSKSFILDL 56 (90)
Q Consensus 1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~N------------------~~~svp~~tVenL~e~l~~df 56 (90)
|||+|+++.++..||||||++|+|++.|.++|+++ +.+.. .++++++++.+.+.|
T Consensus 146 i~G~aqr~~~~~~lhhgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~-~~~~~~v~~~l~~~~ 218 (262)
T 2c8m_A 146 IMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFV-DVSIDEVRNALIRGF 218 (262)
T ss_dssp EEEEEEEEETTEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTS-CCCHHHHHHHHHHHH
T ss_pred EEEeeeEEeCCEEEEEEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHhc-CCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999852 22222 367888888777766
No 4
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=98.89 E-value=1.3e-09 Score=84.26 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=47.6
Q ss_pred CcccceeccCCeeeEeeeeeeecChHHHhhhccCC------------------ccCcCC-cchHHHHHHHHHHHH
Q psy8042 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH------------------AINSCP-EDLVKTLSKSFILDL 56 (90)
Q Consensus 1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~N------------------~~~svp-~~tVenL~e~l~~df 56 (90)
|||+|+++.+++.|||||||+|+|++.|.++|+++ +.+..+ .++++++++++.+.|
T Consensus 143 IsG~Aqr~~~~~~lhhgtllvd~Dl~~~~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~~~~~~v~~~l~~~f 217 (341)
T 1vqz_A 143 FCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYM 217 (341)
T ss_dssp EEEEEEEEETTEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHH
T ss_pred EEEEEEEEECCEEEEEEEEEecCCHHHHHHHhCCCccchhhcccccchhhheeHHHhcCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999852 333344 478888888887777
No 5
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=98.56 E-value=3.1e-08 Score=74.31 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=31.7
Q ss_pred CcccceeccCCeeeEeeeeeeecChHH--------HhhhccCC
Q psy8042 1 ISGTAAKLGRPSSYHHCTLLVNVNKSR--------LSQSLHHH 35 (90)
Q Consensus 1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~--------L~~~L~~N 35 (90)
|||+|+++.++..||||||++|.|++. +.++|+|.
T Consensus 163 I~G~Aqr~~~~~~lhh~~l~v~~dl~~~~~~l~~f~~~~l~~~ 205 (288)
T 2p5i_A 163 FAGISQRRIRGGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQ 205 (288)
T ss_dssp EEEEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTS
T ss_pred EEEEEEEEeCCEEEEEEEEEecCCHHHHHHHHHHHHHHhhcCc
Confidence 689999999999999999999999999 67777764
No 6
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=98.56 E-value=3.7e-08 Score=74.00 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=30.5
Q ss_pred CcccceeccCCeeeEeeeeeeecChHH--------HhhhccC
Q psy8042 1 ISGTAAKLGRPSSYHHCTLLVNVNKSR--------LSQSLHH 34 (90)
Q Consensus 1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~--------L~~~L~~ 34 (90)
|||+|+++.++..||||||++|.|++. +.++|++
T Consensus 162 I~G~Aqr~~~~~~lhh~sl~v~~dl~~~~~~l~~~~~~~l~~ 203 (288)
T 2p0l_A 162 FAGLAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGD 203 (288)
T ss_dssp EEEEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeEEEeCCEEEEEEEEEecCCHHHHHHHHHHHHHHhcCC
Confidence 699999999999999999999999999 5556665
No 7
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=98.19 E-value=1.6e-06 Score=63.87 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=42.1
Q ss_pred CcccceeccCCeeeEeeeeeeecChHHHhhhccCCccC----cC-----CcchHHHHHHHHHHHH
Q psy8042 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAIN----SC-----PEDLVKTLSKSFILDL 56 (90)
Q Consensus 1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~N~~~----sv-----p~~tVenL~e~l~~df 56 (90)
|||+|+++.++..|||+||+||+|++.+.+.....+.+ |+ +.++++++++.+.+.|
T Consensus 157 Iag~g~~~~~~~~~hg~aLnv~~dl~~f~~i~p~g~~~~~vtSl~~~l~~~~~~~ev~~~l~~~f 221 (237)
T 2qhs_A 157 LCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAF 221 (237)
T ss_dssp EEEEEEEEETTEEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHHTSCCCHHHHHHHHHHHH
T ss_pred EEEEeEEeeCCeEEEeEEEecccChHHhcCcCcCccCCCcEEeHHHhhCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999887654322221 22 2466777777776665
No 8
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=95.99 E-value=0.008 Score=44.46 Aligned_cols=56 Identities=9% Similarity=0.147 Sum_probs=37.1
Q ss_pred CcccceeccCCeeeEeeeeeeecChHHHhhhccCCcc----Cc-----CCcchHHHHHHHHHHHH
Q psy8042 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAI----NS-----CPEDLVKTLSKSFILDL 56 (90)
Q Consensus 1 ISGSA~ki~~~~aYHHgTLLv~~Dl~~L~~~L~~N~~----~s-----vp~~tVenL~e~l~~df 56 (90)
|||.+.++.++..||+.+|.+|.|++.+.+...-.+. .| -++++++++++.+.+.|
T Consensus 145 Iaaig~r~~~~vt~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~lg~~~~~~ev~~~l~~~f 209 (232)
T 1w66_A 145 VAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAV 209 (232)
T ss_dssp EEEEEEEEETTEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHH
T ss_pred EEEeeeeeeCCEEEcceEEecCcChHHhcCccccccCCCceeeeHHHhCCCCCHHHHHHHHHHHH
Confidence 6788999999999988799888886555433211111 11 12467777777776666
No 9
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=51.07 E-value=7.4 Score=22.50 Aligned_cols=20 Identities=55% Similarity=0.916 Sum_probs=16.2
Q ss_pred HHhHHHHHHhhhhcccccCCcc
Q psy8042 60 QRSFSDLVKWIRLPMTNWISPT 81 (90)
Q Consensus 60 ~~~f~d~~~~~~~~~~~~~~~~ 81 (90)
|.-|||| |--||-.|-.||.
T Consensus 16 QETFsdL--W~LLP~~~ilspl 35 (39)
T 2k8f_B 16 QETFSDL--WKLLPENNVLSPL 35 (39)
T ss_dssp CHHHHHH--HHTCSSSCCCCCC
T ss_pred HHHHHHH--HHhCCcccccccC
Confidence 5679998 6678999998884
No 10
>3dac_P Cellular tumor antigen P53; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=41.53 E-value=8.5 Score=19.67 Aligned_cols=18 Identities=56% Similarity=0.960 Sum_probs=13.8
Q ss_pred hHHHHHHhhhhcccccCCcc
Q psy8042 62 SFSDLVKWIRLPMTNWISPT 81 (90)
Q Consensus 62 ~f~d~~~~~~~~~~~~~~~~ 81 (90)
.||++ |--||-.||.|+.
T Consensus 2 TFS~l--~kLLp~~~~ls~~ 19 (21)
T 3dac_P 2 TFSDL--WKLLPENNVLSPL 19 (26)
T ss_pred ccchh--hhhCCccceeccc
Confidence 47887 5568999999864
No 11
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=33.87 E-value=43 Score=22.42 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=28.2
Q ss_pred HHHhhhccCCccCcCCcchHHHHHHHHHHHHHHHHHhHHHHHH
Q psy8042 26 SRLSQSLHHHAINSCPEDLVKTLSKSFILDLIGWQRSFSDLVK 68 (90)
Q Consensus 26 ~~L~~~L~~N~~~svp~~tVenL~e~l~~df~~~~~~f~d~~~ 68 (90)
+.|.++++|.+..| .-+++.+++--+.-.|-..|+||-+
T Consensus 9 dilnkl~~pel~~s----erte~lqqlr~~y~s~~se~~dlt~ 47 (97)
T 1no4_A 9 DILNKLLDPELAQS----ERTEALQQLRVNYGSFVSEYNDLTK 47 (97)
T ss_dssp HHHHHHHCTTSCHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHhhhhh----HHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 45677777766544 4467777887788888888888865
No 12
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=30.83 E-value=27 Score=20.94 Aligned_cols=16 Identities=19% Similarity=0.615 Sum_probs=14.0
Q ss_pred HHHHHHhHHHHHHhhh
Q psy8042 56 LIGWQRSFSDLVKWIR 71 (90)
Q Consensus 56 f~~~~~~f~d~~~~~~ 71 (90)
+-.|+..+++|..||.
T Consensus 4 L~~f~~~l~el~~WL~ 19 (118)
T 3uul_A 4 LDSYQIALEEVLTWLL 19 (118)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4579999999999995
No 13
>2l14_B Cellular tumor antigen P53; CBP, TAD, protein binding; NMR {Homo sapiens}
Probab=30.54 E-value=26 Score=21.14 Aligned_cols=22 Identities=50% Similarity=0.773 Sum_probs=17.7
Q ss_pred HHhHHHHHHhhhhcccccCCcccc
Q psy8042 60 QRSFSDLVKWIRLPMTNWISPTFH 83 (90)
Q Consensus 60 ~~~f~d~~~~~~~~~~~~~~~~~~ 83 (90)
|+-|||| |--||-.|-+|+.-+
T Consensus 4 QETFSdL--WkLLP~nnvls~~~~ 25 (49)
T 2l14_B 4 QETFSDL--WKLLPENNVLSPLPS 25 (49)
T ss_dssp TTSHHHH--HHHSSTTCCCSSSCG
T ss_pred HHHHHHH--HHhCCcccccccccC
Confidence 5679998 667899998888765
No 14
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=30.25 E-value=17 Score=19.37 Aligned_cols=9 Identities=67% Similarity=1.202 Sum_probs=6.8
Q ss_pred HHHHHHhhh
Q psy8042 63 FSDLVKWIR 71 (90)
Q Consensus 63 f~d~~~~~~ 71 (90)
.-|+||||-
T Consensus 9 IgdfvKlI~ 17 (26)
T 1dtc_A 9 IGDLVKWII 17 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 358999984
No 15
>1zrx_A Stomoxyn; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic}
Probab=28.73 E-value=18 Score=21.00 Aligned_cols=24 Identities=42% Similarity=0.635 Sum_probs=18.0
Q ss_pred HHHHhHHHHHHhhhhcccccCCcccccc
Q psy8042 58 GWQRSFSDLVKWIRLPMTNWISPTFHVP 85 (90)
Q Consensus 58 ~~~~~f~d~~~~~~~~~~~~~~~~~~~~ 85 (90)
|||++|..++|=|.- -||.|-||.
T Consensus 2 ~frk~fn~~ikkikh----tisetahva 25 (42)
T 1zrx_A 2 GFRKHFNKLVKKVKH----TISETAHVA 25 (42)
T ss_dssp CCHHHHHHHHHHHHH----HHHHHHTHH
T ss_pred cHHHHHHHHHHHHHh----hhHHHHHhh
Confidence 799999999998764 356666653
No 16
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=27.22 E-value=17 Score=26.64 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=20.5
Q ss_pred HHHHHhHHHHHHhhhhcccccCCccc
Q psy8042 57 IGWQRSFSDLVKWIRLPMTNWISPTF 82 (90)
Q Consensus 57 ~~~~~~f~d~~~~~~~~~~~~~~~~~ 82 (90)
..|.++.+||+.|||--..-|-..+|
T Consensus 14 ~eYe~~as~Ll~WI~~~~~~l~~r~f 39 (235)
T 2odv_A 14 QEYRELVLLLLQWMRHHTAAFEERRF 39 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 68999999999999987666655554
No 17
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=21.71 E-value=66 Score=19.04 Aligned_cols=16 Identities=19% Similarity=0.632 Sum_probs=13.8
Q ss_pred HHHHHHhHHHHHHhhh
Q psy8042 56 LIGWQRSFSDLVKWIR 71 (90)
Q Consensus 56 f~~~~~~f~d~~~~~~ 71 (90)
+-.|+...++|..||.
T Consensus 4 L~~F~~~l~el~~WL~ 19 (119)
T 3uun_A 4 LDRYQTALEEVLSWLL 19 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4579999999999995
No 18
>1uj8_A ORF3, hypothetical protein YFHJ; iron-sulfur cluster, ISC, structural genomics, unknown function; 1.75A {Escherichia coli} SCOP: a.159.5.1 PDB: 2bzt_A
Probab=21.60 E-value=34 Score=22.18 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHH---HHHHHhHHHHHHhhh
Q psy8042 43 DLVKTLSKSFILDL---IGWQRSFSDLVKWIR 71 (90)
Q Consensus 43 ~tVenL~e~l~~df---~~~~~~f~d~~~~~~ 71 (90)
..+++++++|.+.+ .=..=.|-||-+||.
T Consensus 17 ~D~~dIA~~L~e~~Pd~DP~tvRFTdL~~wV~ 48 (77)
T 1uj8_A 17 TDSREIGEALYDAYPDLDPKTVRFTDMHQWIC 48 (77)
T ss_dssp TCHHHHHHHHHHHSTTSCGGGCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHCCCCCcCEeeHHHHHHHHH
Confidence 34677788887766 456678999999985
No 19
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=20.68 E-value=37 Score=22.06 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=22.4
Q ss_pred ecChHHHhhhccCCccCcCCcchHHHHHHHH
Q psy8042 22 NVNKSRLSQSLHHHAINSCPEDLVKTLSKSF 52 (90)
Q Consensus 22 ~~Dl~~L~~~L~~N~~~svp~~tVenL~e~l 52 (90)
+++.+.|-..+.|.+.+.||+.--++|...+
T Consensus 55 ~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~I 85 (96)
T 3mhs_B 55 STNFTQILSTVEPKALEMVSDSTRETVLKQI 85 (96)
T ss_dssp CCCHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhHHHHHHCCHHHHHHHHHHH
Confidence 5677788888888899999966555555443
No 20
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=20.28 E-value=32 Score=18.24 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=12.6
Q ss_pred hhccCCccCcCCcchH
Q psy8042 30 QSLHHHAINSCPEDLV 45 (90)
Q Consensus 30 ~~L~~N~~~svp~~tV 45 (90)
..|||+++|++|...-
T Consensus 4 s~lnp~akef~pgvky 19 (26)
T 1jgn_B 4 SNLNPNAKEFVPGVKY 19 (26)
T ss_dssp CSSCTTCCCCCTTSCT
T ss_pred ccCCcchhhcCCCcee
Confidence 4689999999996543
Done!