RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8042
(90 letters)
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A
{Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A*
2aru_A* 2c7i_A 2ars_A* 3r07_A
Length = 262
Score = 48.5 bits (116), Expect = 2e-08
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLH 33
I G A + + + H +LV+ + LS L
Sbjct: 146 IMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLK 178
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid,
ATP-binding, cytoplasm, nucleotide-binding, transferase,
lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A*
3a7a_A* 1x2g_A*
Length = 337
Score = 44.8 bits (106), Expect = 4e-07
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH 35
+SG+A + + +HH TLL+N + SRL+ L+
Sbjct: 134 VSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPD 168
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos
taurus} PDB: 3a7u_A
Length = 347
Score = 41.5 bits (97), Expect = 6e-06
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH 35
ISGTA+K+GR ++YHHCTLL + + LS L
Sbjct: 136 ISGTASKIGRNAAYHHCTLLCGTDGTFLSSLLKSP 170
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin
synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE;
1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3
d.104.1.3
Length = 341
Score = 39.7 bits (93), Expect = 3e-05
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHH 35
G A HH LL +V+ S L+ +L
Sbjct: 143 FCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVS 177
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.21A {Bacillus halodurans c-125}
SCOP: d.104.1.3
Length = 288
Score = 29.2 bits (65), Expect = 0.14
Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 1 ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKSF-------I 53
+G + + R L V+ + + ++ + + K + +
Sbjct: 163 FAGISQRRIRGGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASL 222
Query: 54 LDLIGWQRSFSDLVKWI 70
+L+G + SD++
Sbjct: 223 SELLGQPHNVSDVLLKA 239
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.47
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 42/117 (35%)
Query: 8 LGRPSSYHHCTLL---VNVNKSRLSQSLHHHAI-------NSCPEDLVK--TLSKSFILD 55
RP + L V ++L AI + E+L + D
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQL------VAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 56 LI---------------GWQRSFS---DLVKWIR----LPMTNWI-SPTFHVP-IGI 88
LI ++ F+ ++++W+ P +++ S P IG+
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 0.86
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 27 RLSQSLHHHAINSCP 41
+L SL +A +S P
Sbjct: 24 KLQASLKLYADDSAP 38
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 26.2 bits (58), Expect = 1.6
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 41 PEDLVKTLSKSFILDLIGWQRSFSDLVKWIRLPMTNWISPTFH 83
P L L +S D W F D+ + I + +W SP H
Sbjct: 40 PGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMH 82
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.4 bits (55), Expect = 3.0
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 17/34 (50%)
Query: 32 LHHHAINSCPEDLVKTLSKSFILDLIGWQRSFSD 65
L +++ E W R+FS+
Sbjct: 52 LSDKLVDTRSE----------------W-RTFSN 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 3.5
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 33 HHHAINS-------CPEDLVKTLSKSFILDL 56
HHH ++ +D++ +F+ +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNF 33
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease,
vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP:
c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 25.1 bits (55), Expect = 3.8
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 41 PEDLVKTLSKSFILDLIGWQRSFSDLVKWIRLPMTNWISPTFH 83
P L + + + ++ D+ K I +T+W SP F
Sbjct: 35 PGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFF 77
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 24.7 bits (54), Expect = 5.5
Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 5 AAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKSFILDLIGWQRSFS 64
A L +L N+ ++ + + + +++ +GWQ F
Sbjct: 227 FASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQ--LVEELGWQEDFE 284
Query: 65 DLVK 68
++
Sbjct: 285 KILT 288
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 24.7 bits (54), Expect = 6.0
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 41 PEDLVKTLSKSFILDLIGWQRSFSDLVKWIRLPMTNWISPTFH 83
P L + + WQ D+ + I +T+W SP FH
Sbjct: 35 PGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPKFH 77
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 24.3 bits (53), Expect = 7.2
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 41 PEDLVKTLSKSFILDLIGWQRSFSDLVKWIRLPMTNWISPTFH 83
PE+L + L ++ IR + P F
Sbjct: 71 PEELKQLLDLELRSQGESQKQILERCRAVIRYSVKTG-HPRFF 112
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A
{Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A*
3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Length = 164
Score = 23.7 bits (52), Expect = 8.4
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 17 CTLLVNVNKSRLSQSLHHHAINSC 40
CT++++ RL + H + N+C
Sbjct: 50 CTVMLS-KYDRLQDKIIHFSANAC 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.434
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,476,003
Number of extensions: 68403
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 18
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)