RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8042
         (90 letters)



>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 265

 Score = 34.7 bits (79), Expect = 5e-04
 Identities = 4/34 (11%), Positives = 13/34 (38%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH 34
            +G + +  R        L V+ + +  ++ +  
Sbjct: 150 FAGISQRRIRGGVAVQIYLCVSGSGAERAKMIRT 183


>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus
           agalactiae [TaxId: 1311]}
          Length = 269

 Score = 34.2 bits (78), Expect = 7e-04
 Identities = 6/51 (11%), Positives = 14/51 (27%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAINSCPEDLVKTLSKS 51
            +G A +  +        L V  ++   SQ +         +        +
Sbjct: 159 FAGLAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPN 209


>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma
           acidophilum [TaxId: 2303]}
          Length = 256

 Score = 31.2 bits (70), Expect = 0.010
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH 34
           I G A  + + +   H  +LV+ +   LS  L  
Sbjct: 146 IMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKV 179


>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 246

 Score = 29.0 bits (64), Expect = 0.055
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH 34
           +SG+A +  +   +HH TLL+N + SRL+  L+ 
Sbjct: 134 VSGSAYRETKDRGFHHGTLLLNADLSRLANYLNP 167


>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal
           domain {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 241

 Score = 27.4 bits (60), Expect = 0.23
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 1   ISGTAAKLGRPSSYHHCTLLVNVNKSRLSQSLHH 34
             G A         HH  LL +V+ S L+ +L  
Sbjct: 131 FCGNAQAYINGRIMHHGCLLFDVDLSVLANALKV 164


>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)
          [TaxId: 9823]}
          Length = 476

 Score = 23.6 bits (50), Expect = 5.2
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 41 PEDLVKTLSKSFILDLIGWQRSFSDLVKWIRLPMTNWISPTFH 83
          P  L   +  +   +   ++    D+ K I   +T+W SP F 
Sbjct: 35 PGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFF 77


>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain
          {Cow (Bos taurus) [TaxId: 9913]}
          Length = 90

 Score = 22.5 bits (48), Expect = 7.9
 Identities = 8/37 (21%), Positives = 13/37 (35%)

Query: 4  TAAKLGRPSSYHHCTLLVNVNKSRLSQSLHHHAINSC 40
             KLG          ++     RL   + H + N+C
Sbjct: 35 RGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANAC 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.434 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 363,258
Number of extensions: 13327
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 11
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)