BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8045
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 18/79 (22%)
Query: 28 VKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYF 87
IRAL+AEG+K + + T S ++ S G EP+ P+ YW + + + P
Sbjct: 359 TAIRALMAEGDKAI-EGTDRSSLRILGSAG------EPINPEAWEWYWKKIGKEKCP--- 408
Query: 88 XXXXXXXXXFLVWWEKQYG 106
WW+ + G
Sbjct: 409 --------VVDTWWQTETG 419
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 18/79 (22%)
Query: 28 VKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYF 87
IRAL+AEG+K + + T S ++ S G EP+ P+ YW + + + P
Sbjct: 359 TAIRALMAEGDKAI-EGTDRSSLRILGSVG------EPINPEAWEWYWKKIGKEKCP--- 408
Query: 88 XXXXXXXXXFLVWWEKQYG 106
WW+ + G
Sbjct: 409 --------VVDTWWQTETG 419
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 18/77 (23%)
Query: 30 IRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFXX 89
IRAL+AEG+K + + T S ++ S G EP+ P+ YW + + + P
Sbjct: 361 IRALMAEGDKAI-EGTDRSSLRILGSVG------EPINPEAWEWYWKKIGKEKCP----- 408
Query: 90 XXXXXXXFLVWWEKQYG 106
WW+ + G
Sbjct: 409 ------VVDTWWQTETG 419
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 18/77 (23%)
Query: 30 IRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFXX 89
IRAL+AEG+K + + T S ++ S G EP+ P+ YW + + + P
Sbjct: 361 IRALMAEGDKAI-EGTDRSSLRILGSVG------EPINPEAWEWYWKKIGKEKCP----- 408
Query: 90 XXXXXXXFLVWWEKQYG 106
WW+ + G
Sbjct: 409 ------VVDTWWQTETG 419
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 18/77 (23%)
Query: 30 IRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFXX 89
IRAL+AEG+K + + T S ++ S G EP+ P+ YW + + + P
Sbjct: 361 IRALMAEGDKAI-EGTDRSSLRILGSVG------EPINPEAWEWYWKKIGKEKCP----- 408
Query: 90 XXXXXXXFLVWWEKQYG 106
WW+ + G
Sbjct: 409 ------VVDTWWQTETG 419
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 18/77 (23%)
Query: 30 IRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFXX 89
IRAL+AEG+K + + T S ++ S G EP+ P+ YW + + + P
Sbjct: 361 IRALMAEGDKAI-EGTDRSSLRILGSVG------EPINPEAWEWYWKKIGKEKCP----- 408
Query: 90 XXXXXXXFLVWWEKQYG 106
WW+ + G
Sbjct: 409 ------VVDTWWQTETG 419
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 18/77 (23%)
Query: 30 IRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFXX 89
IRAL+AEG+K + + T S ++ S G EP+ P+ YW + + + P
Sbjct: 361 IRALMAEGDKAI-EGTDRSSLRILGSVG------EPINPEAWEWYWKKIGKEKCP----- 408
Query: 90 XXXXXXXFLVWWEKQYG 106
WW+ + G
Sbjct: 409 ------VVDTWWQTETG 419
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,853,578
Number of Sequences: 62578
Number of extensions: 148393
Number of successful extensions: 251
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 15
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)