BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8045
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02369|NDUB9_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos
taurus GN=NDUFB9 PE=1 SV=2
Length = 179
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 68/105 (64%), Gaps = 7/105 (6%)
Query: 2 YRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAY 61
YR++ A LLRARFD+HK+E D+VK LL E E+E + HP P FP SPGG +Y
Sbjct: 37 YRYF-----ACLLRARFDEHKNEKDMVKATQLLREAEEEFWHGQHPQPYIFPESPGGTSY 91
Query: 62 EREPV--IPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQ 104
ER +P+W LD WHP E+A YP+YF +RE+ KK WE++
Sbjct: 92 ERYECYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWERE 136
>sp|Q9CQJ8|NDUB9_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus
musculus GN=Ndufb9 PE=1 SV=3
Length = 179
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 7/105 (6%)
Query: 2 YRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAY 61
YR++ A L+RARF++HK+E D+++ LL E E+E + HP P FP SPGG ++
Sbjct: 37 YRYF-----ACLMRARFEEHKNEKDMMRATQLLREAEEEFWQNQHPQPYIFPDSPGGTSF 91
Query: 62 EREPV--IPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQ 104
ER +P+W LDYWHP E+A YP+YF +RE+ KK + W+++
Sbjct: 92 ERYECYKVPEWCLDYWHPSEKAMYPDYFSKREQWKKLRMESWDRE 136
>sp|Q0MQE8|NDUB9_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Pongo abelii GN=NDUFB9 PE=2 SV=3
Length = 179
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 11 AVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPV--IP 68
A L+RARF++HK+E D+V+ LL E E+E + HP P FP SPGG +YER +P
Sbjct: 41 ACLMRARFEEHKNEKDMVRATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVP 100
Query: 69 DWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQ 104
+W LD WHP E+A YP+YF +RE+ KK WE++
Sbjct: 101 EWCLDDWHPSEKAMYPDYFAKREQWKKLQRESWERE 136
>sp|Q0MQE9|NDUB9_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3
Length = 179
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 11 AVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPV--IP 68
A L+RARF++HK+E D+ K LL E E+E + HP P FP SPGG +YER +P
Sbjct: 41 ACLMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVP 100
Query: 69 DWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQ 104
+W LD WHP E+A YP+YF +RE+ KK WE++
Sbjct: 101 EWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWERE 136
>sp|Q9Y6M9|NDUB9_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Homo
sapiens GN=NDUFB9 PE=1 SV=3
Length = 179
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 11 AVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPV--IP 68
A L+RARF++HK+E D+ K LL E E+E + HP P FP SPGG +YER +P
Sbjct: 41 ACLMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVP 100
Query: 69 DWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQ 104
+W LD WHP E+A YP+YF +RE+ KK WE++
Sbjct: 101 EWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWERE 136
>sp|Q0MQF0|NDUB9_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pan
troglodytes GN=NDUFB9 PE=2 SV=3
Length = 179
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 11 AVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPV--IP 68
A L+RARF++HK+E D+ K LL E E+E + HP P FP SPGG +YER +P
Sbjct: 41 ACLMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVP 100
Query: 69 DWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQ 104
+W LD WHP E+A YP+YF +RE+ KK WE++
Sbjct: 101 EWCLDDWHPSEKAMYPDYFAKREKWKKLRRESWERE 136
>sp|Q945M1|NDUB9_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
OS=Arabidopsis thaliana GN=CIB22 PE=2 SV=1
Length = 117
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 14 LRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIP 68
LR +F+ ++D D+ +I L+A GE E HP P P +PGG + R P P
Sbjct: 48 LREKFNVNQDVEDVDRIDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPP 102
>sp|Q84HF4|KYNB_PSEFL Kynurenine formamidase OS=Pseudomonas fluorescens GN=kynB PE=3
SV=1
Length = 218
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 39 KELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLE 79
++LFD + P T PG Y++EPV WVLD+ P+
Sbjct: 4 RKLFDISPPITTAIATWPGDTDYQQEPV---WVLDHQCPVN 41
>sp|Q3K2X3|Y492_STRA1 UPF0374 protein SAK_0492 OS=Streptococcus agalactiae serotype Ia
(strain ATCC 27591 / A909 / CDC SS700) GN=SAK_0492 PE=3
SV=1
Length = 177
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 33 LLAEGEKELFDT----THPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFK 88
+ A+GEK L D H + + +PT + E ++ +W+ + P + ++K
Sbjct: 110 VFADGEKRLLDVDEYEQHKAQMNYPTDIDYILKENVKILVEWINENKGPFSSSYINIWYK 169
Query: 89 RREERKK 95
R E KK
Sbjct: 170 RYLELKK 176
>sp|Q8E6W2|Y446_STRA3 UPF0374 protein gbs0446 OS=Streptococcus agalactiae serotype III
(strain NEM316) GN=gbs0446 PE=3 SV=1
Length = 177
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 33 LLAEGEKELFDT----THPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFK 88
+ A+GEK L D H + + +PT + E ++ +W+ + P + ++K
Sbjct: 110 VFADGEKRLLDVDEYEQHKAQMNYPTDIDYILKENVKILVEWINENKGPFSSSYINIWYK 169
Query: 89 RREERKK 95
R E KK
Sbjct: 170 RYLELKK 176
>sp|Q8E1E5|Y411_STRA5 UPF0374 protein SAG0411 OS=Streptococcus agalactiae serotype V
(strain ATCC BAA-611 / 2603 V/R) GN=SAG0411 PE=3 SV=1
Length = 177
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 33 LLAEGEKELFDT----THPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFK 88
+ A+GEK L D H + + +PT + E ++ +W+ + P + ++K
Sbjct: 110 VFADGEKRLLDVDEYEQHKAQMNYPTDIDYILKENVKILVEWINENKGPFSSSYINIWYK 169
Query: 89 RREERKK 95
R E KK
Sbjct: 170 RYLELKK 176
>sp|B6JGU6|TIG_OLICO Trigger factor OS=Oligotropha carboxidovorans (strain ATCC 49405 /
DSM 1227 / OM5) GN=tig PE=3 SV=1
Length = 452
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 54 TSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFKRREERKKE 96
++PG VA R P+ D V+D+ LE A+ E REE KE
Sbjct: 405 SNPGAVAQLRAPIFEDKVVDFI--LELAEVSEKKVSREELFKE 445
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,298,577
Number of Sequences: 539616
Number of extensions: 2138152
Number of successful extensions: 4744
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4729
Number of HSP's gapped (non-prelim): 18
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)