Query psy8045
Match_columns 115
No_of_seqs 111 out of 153
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 17:00:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3466|consensus 100.0 4.3E-51 9.3E-56 306.4 9.1 110 2-112 32-141 (157)
2 PF05347 Complex1_LYR: Complex 98.0 1.2E-05 2.6E-10 50.1 4.4 33 10-42 26-58 (59)
3 PF13232 Complex1_LYR_1: Compl 97.5 0.00024 5.3E-09 44.9 4.9 34 10-43 26-59 (61)
4 KOG3801|consensus 96.7 0.0028 6.2E-08 45.1 4.5 35 9-43 31-65 (94)
5 KOG3426|consensus 95.6 0.012 2.6E-07 43.6 3.1 32 12-43 56-87 (124)
6 KOG4620|consensus 75.1 4.9 0.00011 27.9 3.5 36 13-48 36-73 (80)
7 PF02777 Sod_Fe_C: Iron/mangan 40.9 15 0.00033 25.2 1.2 31 66-103 65-95 (106)
8 COG0191 Fba Fructose/tagatose 39.9 15 0.00032 30.8 1.1 35 23-63 24-58 (286)
9 PF07484 Collar: Phage Tail Co 38.2 25 0.00054 22.3 1.7 28 61-88 6-33 (57)
10 PF01323 DSBA: DSBA-like thior 32.6 79 0.0017 22.5 3.8 28 9-36 105-132 (193)
11 PTZ00078 Superoxide dismutase 31.6 36 0.00078 26.3 2.0 46 51-103 131-176 (193)
12 KOG0876|consensus 29.5 34 0.00073 28.0 1.6 31 66-103 185-215 (234)
13 COG2924 Uncharacterized protei 25.5 1.6E+02 0.0035 20.9 4.2 33 23-55 56-90 (90)
14 COG2732 Barstar, RNAse (barnas 25.4 93 0.002 22.2 3.0 26 12-46 62-87 (91)
15 PF14328 DUF4385: Domain of un 25.3 3.1E+02 0.0067 21.1 6.0 71 6-88 49-122 (145)
16 PF12652 CotJB: CotJB protein; 22.9 1.5E+02 0.0033 20.0 3.7 37 72-110 22-58 (78)
17 CHL00086 apcA allophycocyanin 22.4 1.1E+02 0.0024 23.2 3.2 28 30-62 47-74 (161)
18 PF00631 G-gamma: GGL domain; 22.2 1.3E+02 0.0028 19.2 3.1 49 8-63 8-57 (68)
19 PLN02184 superoxide dismutase 21.8 48 0.001 26.1 1.1 30 67-103 163-192 (212)
20 PRK10925 superoxide dismutase; 21.4 41 0.00089 26.3 0.7 30 67-103 162-191 (206)
21 PLN03090 auxin-responsive fami 20.7 82 0.0018 22.7 2.0 27 29-56 67-93 (104)
No 1
>KOG3466|consensus
Probab=100.00 E-value=4.3e-51 Score=306.42 Aligned_cols=110 Identities=50% Similarity=0.901 Sum_probs=105.4
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCcccccCCCCcccccccCCchhhh
Q psy8045 2 YRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERA 81 (115)
Q Consensus 2 ~~rd~~R~~A~~lRarFe~Nk~v~Dp~~~~~Ll~~gE~el~~~~HPdPyi~P~~PGGtkyeRN~ppP~~vlD~Whp~eka 81 (115)
++|+++|++|+.||||||+|++ +|+.++.+||++||+||++++||+|||||+|||||+|+||..||+|+||+|||+|||
T Consensus 32 ~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~rHpqP~ifp~spGGssy~R~~~~Pdw~lD~Whpaeka 110 (157)
T KOG3466|consen 32 VHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEWRHPQPYIFPDSPGGSSYEREPCPPDWCLDDWHPAEKA 110 (157)
T ss_pred hcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCccccCCCChHHhhcccChhhhH
Confidence 5899999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy8045 82 QYPEYFKRREERKKEFLVWWEKQYGKPSSEG 112 (115)
Q Consensus 82 ~yp~yF~~Re~~k~e~~~~w~k~~~~~~~~~ 112 (115)
|||+||++|||||||+..+|+++..+.++++
T Consensus 111 ~yp~YfakreqrKKe~~t~W~r~~Kq~~ee~ 141 (157)
T KOG3466|consen 111 QYPDYFAKREQRKKERRTSWEREVKQLQEET 141 (157)
T ss_pred hhhHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999997666666655
No 2
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=98.00 E-value=1.2e-05 Score=50.06 Aligned_cols=33 Identities=39% Similarity=0.552 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhh
Q psy8045 10 QAVLLRARFDKHKDENDLVKIRALLAEGEKELF 42 (115)
Q Consensus 10 ~A~~lRarFe~Nk~v~Dp~~~~~Ll~~gE~el~ 42 (115)
-...||+.|++|++++||..|..+|..|+..|.
T Consensus 26 ~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~ 58 (59)
T PF05347_consen 26 IRAEIRQEFRKNRNETDPEKIEELLKKGEEELE 58 (59)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999885
No 3
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=97.51 E-value=0.00024 Score=44.92 Aligned_cols=34 Identities=41% Similarity=0.461 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhc
Q psy8045 10 QAVLLRARFDKHKDENDLVKIRALLAEGEKELFD 43 (115)
Q Consensus 10 ~A~~lRarFe~Nk~v~Dp~~~~~Ll~~gE~el~~ 43 (115)
-...||.+|+.|++++||..++.+|+.|+..|..
T Consensus 26 ~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~ 59 (61)
T PF13232_consen 26 FRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELEL 59 (61)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999999864
No 4
>KOG3801|consensus
Probab=96.74 E-value=0.0028 Score=45.09 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhc
Q psy8045 9 IQAVLLRARFDKHKDENDLVKIRALLAEGEKELFD 43 (115)
Q Consensus 9 ~~A~~lRarFe~Nk~v~Dp~~~~~Ll~~gE~el~~ 43 (115)
|-+-.+|.-|-+||+++||.+++.|+++|++.|.-
T Consensus 31 Y~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~Lev 65 (94)
T KOG3801|consen 31 YFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEV 65 (94)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999863
No 5
>KOG3426|consensus
Probab=95.64 E-value=0.012 Score=43.62 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhc
Q psy8045 12 VLLRARFDKHKDENDLVKIRALLAEGEKELFD 43 (115)
Q Consensus 12 ~~lRarFe~Nk~v~Dp~~~~~Ll~~gE~el~~ 43 (115)
..||++|-+|.||+||+.+..|+-+|-.+|.+
T Consensus 56 ~~ir~qf~kn~hvTD~rViDlLV~kg~~elke 87 (124)
T KOG3426|consen 56 DKIREQFRKNAHVTDPRVIDLLVIKGMEELKE 87 (124)
T ss_pred HHHHHHHHhcCCcCCchhhhHHHHhhHHHHHH
Confidence 46999999999999999999999999998865
No 6
>KOG4620|consensus
Probab=75.09 E-value=4.9 Score=27.88 Aligned_cols=36 Identities=31% Similarity=0.519 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCCC--CHHHHHHHHHHHHHHhhcCCCCC
Q psy8045 13 LLRARFDKHKDEN--DLVKIRALLAEGEKELFDTTHPS 48 (115)
Q Consensus 13 ~lRarFe~Nk~v~--Dp~~~~~Ll~~gE~el~~~~HPd 48 (115)
-+++.|-+|+++. |--.|.-||.-|-+++....||.
T Consensus 36 fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~pe 73 (80)
T KOG4620|consen 36 FVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSSPE 73 (80)
T ss_pred HHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcCcc
Confidence 4899999999987 77889999999999999999985
No 7
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=40.94 E-value=15 Score=25.23 Aligned_cols=31 Identities=26% Similarity=0.592 Sum_probs=23.1
Q ss_pred CCcccccccCCchhhhhCcHHHHHHHHHHHHHHHHHHH
Q psy8045 66 VIPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEK 103 (115)
Q Consensus 66 ppP~~vlD~Whp~eka~yp~yF~~Re~~k~e~~~~w~k 103 (115)
-.|.-+||.| |-|=|-||-+ .|..|++.|-+
T Consensus 65 ~~Pll~iD~w---eHaY~~dy~~----~r~~Yv~~~~~ 95 (106)
T PF02777_consen 65 LIPLLCIDVW---EHAYYLDYGN----KRADYVEAFWN 95 (106)
T ss_dssp EEEEEEEE-S---GGGTHHHHTT----HHHHHHHHHGG
T ss_pred hccchhhhhh---HHHHHHHHhc----cHHHHHHHHHH
Confidence 4688899998 5788999865 46778888753
No 8
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=39.92 E-value=15 Score=30.81 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCccccc
Q psy8045 23 DENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYER 63 (115)
Q Consensus 23 ~v~Dp~~~~~Ll~~gE~el~~~~HPdPyi~P~~PGGtkyeR 63 (115)
|++|...++.+|+.+++.=. |.|.-.|+||.+|.=
T Consensus 24 N~~nlE~~~AileaA~e~~s------PvIiq~S~g~~~y~g 58 (286)
T COG0191 24 NINNLETLQAILEAAEEEKS------PVIIQFSEGAAKYAG 58 (286)
T ss_pred eecCHHHHHHHHHHHHHhCC------CEEEEecccHHHHhc
Confidence 78999999999999998765 999999999999864
No 9
>PF07484 Collar: Phage Tail Collar Domain; InterPro: IPR011083 This entry is represented by a domain found in Bacteriophage T4, Gp12. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This region is occasionally found in conjunction with IPR005003 from INTERPRO. Most of the proteins appear to be phage tail proteins; however some appear to be involved in other processes. For instance the RhiB protein (Q03314 from SWISSPROT) from Rhizobium leguminosarum may be involved in plant-microbe interactions []. A related protein, microcystin related protein (MrpB, Q9L3N1 from SWISSPROT) is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate (P10930 from SWISSPROT) suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop [] and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologues but the intervening sequence is not. Much of the function of P10930 from SWISSPROT appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the collar and may bind SO4. The long unconserved region maybe due to domain swapping in and out of a loop or due to rapid evolution.; PDB: 1OCY_A 2XGF_C 1H6W_A.
Probab=38.18 E-value=25 Score=22.34 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=18.0
Q ss_pred cccCCCCcccccccCCchhhhhCcHHHH
Q psy8045 61 YEREPVIPDWVLDYWHPLERAQYPEYFK 88 (115)
Q Consensus 61 yeRN~ppP~~vlD~Whp~eka~yp~yF~ 88 (115)
|.-+..|..|++=.=-.+.+++||+.|+
T Consensus 6 ~~~~~~P~gwl~cdG~~~~~~~Yp~L~~ 33 (57)
T PF07484_consen 6 FAGNTAPSGWLLCDGQSLSIAQYPALFA 33 (57)
T ss_dssp ESSSS-STTEEESBS-B--TTT-HHHHH
T ss_pred ecCCCCCchhhhcCCCcCChhHhHHHHH
Confidence 4455667888877777889999999997
No 10
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=32.58 E-value=79 Score=22.50 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q psy8045 9 IQAVLLRARFDKHKDENDLVKIRALLAE 36 (115)
Q Consensus 9 ~~A~~lRarFe~Nk~v~Dp~~~~~Ll~~ 36 (115)
......++-|..+++++|+..+..++++
T Consensus 105 ~~~al~~a~~~~~~~i~~~~vl~~~~~~ 132 (193)
T PF01323_consen 105 FADALFRAYFVEGRDISDPDVLAEIAEE 132 (193)
T ss_dssp HHHHHHHHHHTSST-TSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 3445578899999999999877776653
No 11
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=31.56 E-value=36 Score=26.29 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=29.7
Q ss_pred cCCCCCCCcccccCCCCcccccccCCchhhhhCcHHHHHHHHHHHHHHHHHHH
Q psy8045 51 KFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEK 103 (115)
Q Consensus 51 i~P~~PGGtkyeRN~ppP~~vlD~Whp~eka~yp~yF~~Re~~k~e~~~~w~k 103 (115)
|..+.=.|+-+...--.|.-+||.| |-|-|.||=++ |..|++.|-+
T Consensus 131 i~~t~n~~~p~~~~~~~PlL~lDvW---EHAYyldY~n~----r~~Yi~~~w~ 176 (193)
T PTZ00078 131 IVQTHDAGNPIKDNTGKPLLTCDIW---EHAYYIDYRND----RASYVNSWWN 176 (193)
T ss_pred EEeccCCCCCccCCCCceEEEeccc---hhhhHHHHccC----HHHHHHHHHH
Confidence 3334444444433223689999998 67889998544 5778888755
No 12
>KOG0876|consensus
Probab=29.51 E-value=34 Score=28.02 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=25.6
Q ss_pred CCcccccccCCchhhhhCcHHHHHHHHHHHHHHHHHHH
Q psy8045 66 VIPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEK 103 (115)
Q Consensus 66 ppP~~vlD~Whp~eka~yp~yF~~Re~~k~e~~~~w~k 103 (115)
..|.-.+|.| |.|=|.||= -.+.+|++.|=+
T Consensus 185 ~vPLl~IDvW---eHAYyldY~----n~R~~Yi~~~wd 215 (234)
T KOG0876|consen 185 LVPLLGIDVW---EHAYYLDYG----NVRAEYIKAIWD 215 (234)
T ss_pred ccceEEEecc---hhHhHHHhc----cchHHHHHHHHH
Confidence 7899999998 789999985 556789988865
No 13
>COG2924 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.49 E-value=1.6e+02 Score=20.88 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCC--CCCCCcCCCC
Q psy8045 23 DENDLVKIRALLAEGEKELFDTT--HPSPIKFPTS 55 (115)
Q Consensus 23 ~v~Dp~~~~~Ll~~gE~el~~~~--HPdPyi~P~~ 55 (115)
|.-|++.-+.|.++-+..|++-. |++=|++|++
T Consensus 56 nm~n~e~Rk~Leqem~~flf~~~~~~~~GYvpp~~ 90 (90)
T COG2924 56 NMMNAEHRKLLEQEMVNFLFEGKAVHIEGYVPPDK 90 (90)
T ss_pred CcCCHHHHHHHHHHHHHHhhcCccccccccCCCCC
Confidence 67788888888888999999876 8999999874
No 14
>COG2732 Barstar, RNAse (barnase) inhibitor [Transcription]
Probab=25.38 E-value=93 Score=22.15 Aligned_cols=26 Identities=38% Similarity=0.431 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhcCCC
Q psy8045 12 VLLRARFDKHKDENDLVKIRALLAEGEKELFDTTH 46 (115)
Q Consensus 12 ~~lRarFe~Nk~v~Dp~~~~~Ll~~gE~el~~~~H 46 (115)
..||.+|++ +..+|+++|++|...-|
T Consensus 62 ~~l~~~f~~---------iv~vl~eaeEelegkf~ 87 (91)
T COG2732 62 NQLRRRFGA---------IVLVLEEAEEELEGKFR 87 (91)
T ss_pred hHHHHHHHH---------HHHHHHHHHHHHhccee
Confidence 457777765 77899999999986543
No 15
>PF14328 DUF4385: Domain of unknown function (DUF4385)
Probab=25.31 E-value=3.1e+02 Score=21.06 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCcccccCCCCcccccccCCchhhhh
Q psy8045 6 SIEIQAVLLRARFDKHKDEND---LVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQ 82 (115)
Q Consensus 6 ~~R~~A~~lRarFe~Nk~v~D---p~~~~~Ll~~gE~el~~~~HPdPyi~P~~PGGtkyeRN~ppP~~vlD~Whp~eka~ 82 (115)
+-+.-|..|-+.|...+.-.| ++-+++.|+.|--.-- +..+.+||-||.-+-..+.-..| .|||.
T Consensus 49 iA~~Ss~kIy~~Fl~Y~~~~DFvGmDMaRKflQMG~TRar--------RYANhkgGrKY~~~~~~~~~~~d----~~Kae 116 (145)
T PF14328_consen 49 IARESSEKIYEMFLDYLEQDDFVGMDMARKFLQMGYTRAR--------RYANHKGGRKYDGREELPPQEED----PEKAE 116 (145)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHhchhHHH--------HhhcCCCccccccccccCCCCCC----HHHHH
Confidence 345667888999988776666 5788899998866544 34568999999865544332233 66665
Q ss_pred CcHHHH
Q psy8045 83 YPEYFK 88 (115)
Q Consensus 83 yp~yF~ 88 (115)
=-..|.
T Consensus 117 aA~IFk 122 (145)
T PF14328_consen 117 AAAIFK 122 (145)
T ss_pred HHHHHH
Confidence 544443
No 16
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=22.95 E-value=1.5e+02 Score=20.03 Aligned_cols=37 Identities=30% Similarity=0.583 Sum_probs=25.2
Q ss_pred cccCCchhhhhCcHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy8045 72 LDYWHPLERAQYPEYFKRREERKKEFLVWWEKQYGKPSS 110 (115)
Q Consensus 72 lD~Whp~eka~yp~yF~~Re~~k~e~~~~w~k~~~~~~~ 110 (115)
||. ||-.+.- =+||+.--++.++.++.++++||.+.-
T Consensus 22 LDT-HP~d~~A-l~~y~~~~~~~~~l~~~Ye~~yGPLt~ 58 (78)
T PF12652_consen 22 LDT-HPDDQEA-LEYYNEYSKQRKQLKKEYEKRYGPLTN 58 (78)
T ss_pred hcC-CCCcHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 455 6665432 356677677777777888999998754
No 17
>CHL00086 apcA allophycocyanin alpha subunit
Probab=22.43 E-value=1.1e+02 Score=23.20 Aligned_cols=28 Identities=36% Similarity=0.722 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcCCCCCCCcccc
Q psy8045 30 IRALLAEGEKELFDTTHPSPIKFPTSPGGVAYE 62 (115)
Q Consensus 30 ~~~Ll~~gE~el~~~~HPdPyi~P~~PGGtkye 62 (115)
+..|++++.+.++. ++|+ -..|||..|.
T Consensus 47 a~~IV~~A~~~l~~-~~P~----l~~~gG~~y~ 74 (161)
T CHL00086 47 RERIVKQGGQQLFQ-KRPD----IVSPGGNAYG 74 (161)
T ss_pred HHHHHHHHHHHHHH-HCcC----CcCCCCCCcc
Confidence 46788888888886 4554 3589999883
No 18
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=22.19 E-value=1.3e+02 Score=19.15 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcCCC-CCCCccccc
Q psy8045 8 EIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPT-SPGGVAYER 63 (115)
Q Consensus 8 R~~A~~lRarFe~Nk~v~Dp~~~~~Ll~~gE~el~~~~HPdPyi~P~-~PGGtkyeR 63 (115)
+.+...||.+-+.+|- +=...++.|++=.| ..+||++++. .|..++...
T Consensus 8 ~~ei~~L~~el~~~r~-~vS~a~~~li~y~~------~~~DPll~~~~~p~~~~~NP 57 (68)
T PF00631_consen 8 KREIEQLRQELERERI-KVSKACKELIEYCE------STPDPLLPGPWGPPSSSSNP 57 (68)
T ss_dssp HHHHHHHHHHHTS-----HHHHHHHHHHHHH------GTC-HHHHT--SS--GGGST
T ss_pred HHHHHHHHHHHcccce-eHHHHHHHHHHHhc------CCCCceeCCCCCCCCccCCC
Confidence 4556788888777444 66677777777666 7899999877 454444443
No 19
>PLN02184 superoxide dismutase [Fe]
Probab=21.76 E-value=48 Score=26.12 Aligned_cols=30 Identities=23% Similarity=0.609 Sum_probs=23.3
Q ss_pred CcccccccCCchhhhhCcHHHHHHHHHHHHHHHHHHH
Q psy8045 67 IPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEK 103 (115)
Q Consensus 67 pP~~vlD~Whp~eka~yp~yF~~Re~~k~e~~~~w~k 103 (115)
.|.-+||.| |-|-|-||=++ +.+|++.|-+
T Consensus 163 ~PlL~iDvW---EHAYyldY~n~----r~~Yl~~~w~ 192 (212)
T PLN02184 163 FPLLTIDVW---EHAYYLDFQNR----RPDYIKTFMT 192 (212)
T ss_pred eeEEEEecc---hhhhHHHhccC----HHHHHHHHHH
Confidence 588899998 67889998655 4778877753
No 20
>PRK10925 superoxide dismutase; Provisional
Probab=21.41 E-value=41 Score=26.27 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=23.6
Q ss_pred CcccccccCCchhhhhCcHHHHHHHHHHHHHHHHHHH
Q psy8045 67 IPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEK 103 (115)
Q Consensus 67 pP~~vlD~Whp~eka~yp~yF~~Re~~k~e~~~~w~k 103 (115)
.|.-+||.| |-|=|-||= .++.+|++.|-+
T Consensus 162 ~PlL~iDvW---EHAYyldY~----n~R~~Yv~~~w~ 191 (206)
T PRK10925 162 FPILGLDVW---EHAYYLKFQ----NRRPDYIKEFWN 191 (206)
T ss_pred ceeEEEech---HHHhHHHHc----cCHHHHHHHHHh
Confidence 489999998 678888884 456788888754
No 21
>PLN03090 auxin-responsive family protein; Provisional
Probab=20.73 E-value=82 Score=22.71 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcCCCCC
Q psy8045 29 KIRALLAEGEKELFDTTHPSPIKFPTSP 56 (115)
Q Consensus 29 ~~~~Ll~~gE~el~~~~HPdPyi~P~~P 56 (115)
..+.||+.+|+|+ -+.|.-|.+.|++.
T Consensus 67 ~F~~LL~~aeeEf-Gf~~~G~L~IPC~~ 93 (104)
T PLN03090 67 EFQSLLQQAEEEF-GFDHDMGLTIPCEE 93 (104)
T ss_pred HHHHHHHHHHHHh-CCCCCCcEEEeCCH
Confidence 4578999999998 56777788777753
Done!