Query psy8045
Match_columns 115
No_of_seqs 111 out of 153
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 17:01:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8045.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8045hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dw4a1 a.4.1.18 (A:172-273) L 46.4 3.5 0.00026 26.4 1.3 18 73-90 15-32 (102)
2 d2fq3a1 a.4.1.18 (A:311-395) T 42.3 2.1 0.00015 26.7 -0.4 17 73-89 7-23 (85)
3 g1h6w.2 d.231.1.1 (A:328-396,B 29.1 14 0.001 22.7 2.0 25 64-88 25-50 (79)
4 d2p4ka2 d.44.1.1 (A:84-198) Mn 27.5 9.3 0.00068 24.5 1.0 30 67-103 70-99 (115)
5 d1vlha_ c.26.1.3 (A:) Phosphop 26.1 32 0.0024 20.6 3.5 26 10-35 126-153 (157)
6 d2nyba2 d.44.1.1 (A:83-192) Fe 24.4 9.1 0.00067 24.4 0.5 30 67-103 68-97 (110)
7 d1ix9a2 d.44.1.1 (A:91-205) Mn 24.3 9.2 0.00067 24.5 0.5 30 67-103 71-100 (115)
8 d1jr9a2 d.44.1.1 (A:92-202) Mn 23.5 11 0.00082 24.0 0.8 30 67-103 67-96 (111)
9 d1kkca2 d.44.1.1 (A:98-213) Mn 22.5 13 0.00096 24.0 1.0 30 67-103 71-100 (116)
10 d1r4wa_ c.47.1.13 (A:) Mitocho 22.2 68 0.0049 20.2 4.7 28 9-36 116-143 (221)
11 d3dwya1 a.29.2.1 (A:1084-1197) 20.9 51 0.0037 20.2 3.7 16 27-42 4-19 (114)
12 d1ma1a2 d.44.1.1 (A:92-204) Fe 20.8 20 0.0015 22.8 1.7 30 67-103 69-98 (113)
13 d1ocya_ d.231.1.1 (A:) Recepto 20.4 23 0.0017 23.0 1.9 28 61-88 20-48 (198)
No 1
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.43 E-value=3.5 Score=26.43 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=14.8
Q ss_pred ccCCchhhhhCcHHHHHH
Q psy8045 73 DYWHPLERAQYPEYFKRR 90 (115)
Q Consensus 73 D~Whp~eka~yp~yF~~R 90 (115)
|-=||.|+..+||+|...
T Consensus 15 d~l~~~E~~~fpe~~~~~ 32 (102)
T d2dw4a1 15 DRMTSQEAACFPDIISGP 32 (102)
T ss_dssp TSCCHHHHHHCHHHHTSC
T ss_pred CcCCHHHHHHChHhhcCC
Confidence 444999999999999754
No 2
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.26 E-value=2.1 Score=26.74 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=14.2
Q ss_pred ccCCchhhhhCcHHHHH
Q psy8045 73 DYWHPLERAQYPEYFKR 89 (115)
Q Consensus 73 D~Whp~eka~yp~yF~~ 89 (115)
|.=||+|++..|++|.-
T Consensus 7 ~~i~~iE~~~lPeff~~ 23 (85)
T d2fq3a1 7 EKIHSIEVQSLPEFFTN 23 (85)
T ss_dssp TCCCHHHHHHCGGGCCS
T ss_pred CcCCHHHHHHCHHHhcC
Confidence 44599999999999854
No 3
>g1h6w.2 d.231.1.1 (A:328-396,B:518-527) Receptor-binding domain of short tail fibre protein gp12 {Bacteriophage T4 [TaxId: 10665]}
Probab=29.09 E-value=14 Score=22.69 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=20.2
Q ss_pred CCCCc-ccccccCCchhhhhCcHHHH
Q psy8045 64 EPVIP-DWVLDYWHPLERAQYPEYFK 88 (115)
Q Consensus 64 N~ppP-~~vlD~Whp~eka~yp~yF~ 88 (115)
+..|| -|++=.=..+.+++||+.|+
T Consensus 25 ~~~pp~GWl~CdG~~l~~~~Yp~Lf~ 50 (79)
T g1h6w.2 25 DSLPSDAWRFCHGGTVSASDCPLYAS 50 (79)
T ss_dssp SSCSCTTEEESBSCBCCTTTCHHHHH
T ss_pred CcCCCcCcEeeCCeeCCHhHCHHHHH
Confidence 44455 59888778899999999997
No 4
>d2p4ka2 d.44.1.1 (A:84-198) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.54 E-value=9.3 Score=24.48 Aligned_cols=30 Identities=33% Similarity=0.500 Sum_probs=22.6
Q ss_pred CcccccccCCchhhhhCcHHHHHHHHHHHHHHHHHHH
Q psy8045 67 IPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEK 103 (115)
Q Consensus 67 pP~~vlD~Whp~eka~yp~yF~~Re~~k~e~~~~w~k 103 (115)
.|.-+||.| |=|=|-||=++| .+|++.|-+
T Consensus 70 ~PlL~lDvW---EHAYylDy~n~r----~~Yi~~~~~ 99 (115)
T d2p4ka2 70 IPLLGIDVW---EHAYYLQYKNVR----PDYLKAIWN 99 (115)
T ss_dssp EEEEEEECS---GGGTHHHHTTCH----HHHHHHHGG
T ss_pred eeEEEEech---hhHHHHhhhccH----HHHHHHHHH
Confidence 578899998 668888887654 558888754
No 5
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]}
Probab=26.10 E-value=32 Score=20.65 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCCCCCH--HHHHHHHH
Q psy8045 10 QAVLLRARFDKHKDENDL--VKIRALLA 35 (115)
Q Consensus 10 ~A~~lRarFe~Nk~v~Dp--~~~~~Ll~ 35 (115)
-++.||++...|++++.. ..+.+.|+
T Consensus 126 SST~IR~~i~~g~~i~~lvP~~V~~yI~ 153 (157)
T d1vlha_ 126 SSSLVKEVALYGGDVTEWVPPEVARALN 153 (157)
T ss_dssp CHHHHHHHHHTTCCCTTTSCHHHHHHHH
T ss_pred cHHHHHHHHHcCCChhHhcCHHHHHHHH
Confidence 378999999999998864 44444553
No 6
>d2nyba2 d.44.1.1 (A:83-192) Fe superoxide dismutase (FeSOD) {Escherichia coli [TaxId: 562]}
Probab=24.44 E-value=9.1 Score=24.39 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=22.9
Q ss_pred CcccccccCCchhhhhCcHHHHHHHHHHHHHHHHHHH
Q psy8045 67 IPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEK 103 (115)
Q Consensus 67 pP~~vlD~Whp~eka~yp~yF~~Re~~k~e~~~~w~k 103 (115)
.|.-+||.| |-|=|-||= ..|.+|++.|-+
T Consensus 68 ~PlL~lDvW---EHAYylDy~----n~r~~Yi~~~~~ 97 (110)
T d2nyba2 68 TPLLTVDVW---EHAYYIDYR----NARPGYLEHFWA 97 (110)
T ss_dssp EEEEEEECS---GGGTHHHHT----TCHHHHHHHHHT
T ss_pred eeeEEeehh---hhhhHHHHC----cCHHHHHHHHHH
Confidence 588899998 567788884 456788888754
No 7
>d1ix9a2 d.44.1.1 (A:91-205) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]}
Probab=24.29 E-value=9.2 Score=24.51 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=22.6
Q ss_pred CcccccccCCchhhhhCcHHHHHHHHHHHHHHHHHHH
Q psy8045 67 IPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEK 103 (115)
Q Consensus 67 pP~~vlD~Whp~eka~yp~yF~~Re~~k~e~~~~w~k 103 (115)
.|.-+||.| |=|=|-||= ..|..|++.|-+
T Consensus 71 ~PlL~lDvW---EHAYyldy~----n~r~~Yi~~~~~ 100 (115)
T d1ix9a2 71 FPIMGLDVW---EHAYFLKFQ----NRRPDYIKEFWN 100 (115)
T ss_dssp EEEEEEECS---GGGTHHHHT----TCHHHHHHHHHH
T ss_pred cceEEeehh---hHHhHHHHh----ccHHHHHHHHHH
Confidence 489999998 567788883 345669888765
No 8
>d1jr9a2 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD) {Bacillus halodenitrificans [TaxId: 1482]}
Probab=23.50 E-value=11 Score=24.01 Aligned_cols=30 Identities=27% Similarity=0.534 Sum_probs=22.6
Q ss_pred CcccccccCCchhhhhCcHHHHHHHHHHHHHHHHHHH
Q psy8045 67 IPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEK 103 (115)
Q Consensus 67 pP~~vlD~Whp~eka~yp~yF~~Re~~k~e~~~~w~k 103 (115)
.|.-+||.| |-|=|.||=++ |..|++.|-+
T Consensus 67 ~PlL~iDvW---EHAYylDy~n~----r~~Yi~~~~~ 96 (111)
T d1jr9a2 67 KPILGLDVW---EHAYYLKYQNK----RPDYISAFWN 96 (111)
T ss_dssp CCSCEEECS---GGGTTTTTTTC----HHHHHHHHHH
T ss_pred eeEEEEech---hhhhHHhhhcc----HHHHHHHHHH
Confidence 488899998 66889999554 4458887765
No 9
>d1kkca2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]}
Probab=22.54 E-value=13 Score=23.97 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=22.5
Q ss_pred CcccccccCCchhhhhCcHHHHHHHHHHHHHHHHHHH
Q psy8045 67 IPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEK 103 (115)
Q Consensus 67 pP~~vlD~Whp~eka~yp~yF~~Re~~k~e~~~~w~k 103 (115)
.|.-+||.| |-|=|.||=++ |..|++.|-+
T Consensus 71 ~PlL~lDvW---EHAYylDY~n~----r~~Yi~~~~~ 100 (116)
T d1kkca2 71 APVFGVDMW---EHAYYLQYLND----KASYAKGIWN 100 (116)
T ss_dssp EEEEEEECS---GGGTHHHHTTC----HHHHHHHHGG
T ss_pred cceEEeecc---hhccHhhhhcc----HHHHHHHHHH
Confidence 488899998 66889999654 4458888754
No 10
>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.16 E-value=68 Score=20.19 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q psy8045 9 IQAVLLRARFDKHKDENDLVKIRALLAE 36 (115)
Q Consensus 9 ~~A~~lRarFe~Nk~v~Dp~~~~~Ll~~ 36 (115)
+--...++-|..+.+++|+..+..++.+
T Consensus 116 ~~~~l~~a~~~~g~di~d~~~l~~~a~~ 143 (221)
T d1r4wa_ 116 VSRELWMRIWSRDEDITESQNILSAAEK 143 (221)
T ss_dssp HHHHHHHHHHTSCCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcccchHHHHHHHHH
Confidence 3345678899999999999877666554
No 11
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.91 E-value=51 Score=20.19 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhh
Q psy8045 27 LVKIRALLAEGEKELF 42 (115)
Q Consensus 27 p~~~~~Ll~~gE~el~ 42 (115)
|.++++.|...=..|.
T Consensus 4 p~el~~~l~~~l~~l~ 19 (114)
T d3dwya1 4 PEELRQALMPTLEALY 19 (114)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666655544554
No 12
>d1ma1a2 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.80 E-value=20 Score=22.78 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=21.6
Q ss_pred CcccccccCCchhhhhCcHHHHHHHHHHHHHHHHHHH
Q psy8045 67 IPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEK 103 (115)
Q Consensus 67 pP~~vlD~Whp~eka~yp~yF~~Re~~k~e~~~~w~k 103 (115)
.|.-+||.| |-|=|-||=+ .|.+|++.|-+
T Consensus 69 ~plL~lDvW---EHAYyldY~n----~r~~Yi~~~~~ 98 (113)
T d1ma1a2 69 RILLVLDVW---EHAYYIDYRN----VRPDYVEAFWN 98 (113)
T ss_dssp CCSEEEECS---GGGTHHHHTT----CHHHHHHHHTT
T ss_pred eeEEEEecc---hhhhHHHHCc----cHHHHHHHHHH
Confidence 478899998 5577777754 45679888754
No 13
>d1ocya_ d.231.1.1 (A:) Receptor-binding domain of short tail fibre protein gp12 {Bacteriophage T4 [TaxId: 10665]}
Probab=20.37 E-value=23 Score=23.02 Aligned_cols=28 Identities=11% Similarity=0.272 Sum_probs=21.7
Q ss_pred cccCCCCc-ccccccCCchhhhhCcHHHH
Q psy8045 61 YEREPVIP-DWVLDYWHPLERAQYPEYFK 88 (115)
Q Consensus 61 yeRN~ppP-~~vlD~Whp~eka~yp~yF~ 88 (115)
|..+..|| -|+|=.=..+.+++||+.|+
T Consensus 20 ~~g~~~pp~Gwl~CdG~~~~~~~yp~L~~ 48 (198)
T d1ocya_ 20 WAADSLPSDAWRFCHGGTVSASDCPLYAS 48 (198)
T ss_dssp ESSSSCSSTTEEESBSCBCCTTTCHHHHH
T ss_pred eeCCCCCCcccEecCCEecChhhCHHHHH
Confidence 55556665 69887667788999999987
Done!