RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8045
(115 letters)
>gnl|CDD|203236 pfam05347, Complex1_LYR, Complex 1 protein (LYR family).
Proteins in this family have been identified as a
component of the higher eukaryotic NADH complex. In
Saccharomyces cerevisiae, the Isd11 protein has been
shown to play a role in Fe/S cluster biogenesis in
mitochondria. We have named this family LYR after a
highly conserved tripeptide motif close to the
N-terminus of these proteins.
Length = 59
Score = 36.8 bits (86), Expect = 1e-04
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 14 LRARFDKHKDENDLVKIRALLAEGEKEL 41
+R F K+K+ D KI ALL EG+K+L
Sbjct: 30 IRDEFRKNKNLTDPEKIEALLKEGKKQL 57
>gnl|CDD|221996 pfam13232, Complex1_LYR_1, Complex1_LYR-like. This is a family
of proteins carrying the LYR motif of family
Complex1_LYR, pfam05347, likely to be involved in Fe-S
cluster biogenesis in mitochondria.
Length = 61
Score = 36.0 bits (84), Expect = 3e-04
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 13 LLRARFDKHKDENDLVKIRALLAEGEKEL 41
+R F K+KD D KI LL EG+K+L
Sbjct: 29 RIRDEFRKNKDLTDPEKIEKLLKEGKKQL 57
>gnl|CDD|185623 PTZ00444, PTZ00444, hypothetical protein; Provisional.
Length = 184
Score = 30.2 bits (68), Expect = 0.16
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 22/90 (24%)
Query: 20 KHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYERE---PVIPDWV----- 71
D+ + K+ + + E E H S G +YER+ P W
Sbjct: 64 HRIDKEVIKKLDKDIIKEENEDKKKHH--------SCGEPSYERDYSYPCPEGWTKNSNG 115
Query: 72 ----LDYWHPLERAQYPEYFKRREERKKEF 97
+DY P E QY ++F EE K+EF
Sbjct: 116 QCWGMDYKGPCEALQYFKWFS--EEEKREF 143
>gnl|CDD|220965 pfam11069, DUF2870, Protein of unknown function (DUF2870). This
is a eukaryotic family of proteins with unknown
function.
Length = 98
Score = 27.8 bits (62), Expect = 0.74
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 54 TSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFKRREERKK 95
G A REPVI + +RA ++R+EE KK
Sbjct: 34 QKKGSGAPPREPVIDE-------EAQRAMMAYMYRRQEELKK 68
>gnl|CDD|234128 TIGR03159, cas_Csc1, CRISPR type I-D/CYANO-associated protein
Csc1. CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) is a widespread family of
prokaryotic direct repeats with spacers of unique
sequence between consecutive repeats. This protein
family is a CRISPR-associated (Cas) family strictly
associated with the Cyano subtype of CRISPR/Cas locus,
found in several species of Cyanobacteria and several
archaeal species. This family is designated Csc1 for
CRISPR/Cas Subtype Cyano protein 1, as it is often the
first gene upstream of the core cas genes,
cas3-cas4-cas1-cas2 [Mobile and extrachromosomal
element functions, Other].
Length = 223
Score = 26.7 bits (59), Expect = 2.4
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 44 TTHPSPIKFPTSPGGVAYEREPVIPDWVLDY 74
T H SP+ F + G YE EP I + LDY
Sbjct: 2 TLH-SPVFFASRESGRLYETEPYIGNTALDY 31
>gnl|CDD|187842 cd09711, Csc1_I-D, CRISPR/Cas system-associated protein Csc1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
RAMP superfamily protein; predicted Cas5 ortholog; also
known as CasA/Cse1 family.
Length = 210
Score = 26.7 bits (59), Expect = 2.6
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 44 TTHPSPIKFPTSPGGVAYEREPVIPDWVLDY 74
T H SP+ F + G YE EP I + LDY
Sbjct: 2 TLH-SPVFFASRESGRLYETEPYIGNTALDY 31
>gnl|CDD|233536 TIGR01695, mviN, integral membrane protein MviN. This model
represents MviN, a family of integral membrane proteins
predicted to have ten or more transmembrane regions.
Although frequently listed as a virulence protein, it is
not restricted to pathogens and it is an essential
protein in Sinorhizobium meliloti. In a number of
species its gene is adjacent to that of the
uridylyltransferase GlnD , the signal-transducing enzyme
that performs the key modification to the nitrogen
regulatory protein PII [Unknown function, General].
Length = 502
Score = 26.9 bits (60), Expect = 2.6
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 5 YSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPS 48
+ I + VLL + +H E + ++R LL +G + T PS
Sbjct: 275 FGISLSTVLL-PKLSRHASEGNWNELRDLLNQGIRLSLLLTIPS 317
>gnl|CDD|221290 pfam11885, DUF3405, Protein of unknown function (DUF3405). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 636 to 810
amino acids in length.
Length = 483
Score = 26.6 bits (59), Expect = 3.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 11 AVLLRARFDKHKDENDLVKIRALLAE 36
AV++RA END++ +R+L++E
Sbjct: 94 AVVIRAWHGYKWTENDILNLRSLISE 119
>gnl|CDD|149458 pfam08404, Baculo_p74_N, Baculoviridae P74 N-terminal. This domain
is found at the N-terminus of P74 occlusion-derived
virus (ODV) envelope proteins which are required for
oral infectivity. The envelope proteins are found in
baculoviruses which are insect pathogens. The C-terminus
of P74 is anchored to the membrane whereas the
N-terminus is exposed to the virion surface. Furthermore
P74 is unusual for a virus envelope protein as it lacks
an N-terminal localisation signal sequence. Also see
pfam04583.
Length = 301
Score = 25.7 bits (57), Expect = 5.9
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 9/34 (26%)
Query: 42 FDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYW 75
FD T PSPI P P V + VL+ W
Sbjct: 236 FDYTRPSPIL-PPPP--------VVDSEAVLEEW 260
>gnl|CDD|221644 pfam12574, 120_Rick_ant, 120 KDa Rickettsia surface antigen. This
domain family is found in bacteria, and is approximately
40 amino acids in length. This family is a Rickettsia
surface antigen of 120 KDa which may be used as an
antigen for immune response against the bacterial
species.
Length = 253
Score = 25.6 bits (56), Expect = 6.7
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 37 GEKELFDTTHPSPIKF-PTSPGGVAY 61
G+ +L + + P P+KF P VAY
Sbjct: 180 GKPKLKEISSPQPLKFAGDGPDAVAY 205
>gnl|CDD|222919 PHA02688, PHA02688, ORF059 IMV protein VP55; Provisional.
Length = 323
Score = 25.4 bits (56), Expect = 9.1
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 47 PSPIKFPTSPGGVAYEREPVIPDWVLDY--WHPLERAQYPEYF 87
+ P S ++ ++ D Y W +E Y YF
Sbjct: 39 VKDAEVPPSAKNLSPPKDDPDGDHSYKYIQWTKVESENYKHYF 81
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.447
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,373,922
Number of extensions: 571179
Number of successful extensions: 590
Number of sequences better than 10.0: 1
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 29
Length of query: 115
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 36
Effective length of database: 7,433,636
Effective search space: 267610896
Effective search space used: 267610896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)