RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8045
         (115 letters)



>d1yvua1 b.34.14.1 (A:4-314) Argonaute homologue Aq_1447 {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 311

 Score = 27.0 bits (59), Expect = 0.63
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 76  HPLERAQYPEYFKRREERKKEFLVWWEKQYGKPSS 110
           H   +  + E  K RE R+K FLV  EK Y  P++
Sbjct: 216 HKSSKKAWEELLKNRELREKAFLVVLEKGYTYPAT 250


>d1j7xa_ c.14.1.2 (A:) Interphotoreceptor retinoid-binding protein
           IRBP {African clawed frog (Xenopus laevis) [TaxId:
           8355]}
          Length = 302

 Score = 25.0 bits (54), Expect = 2.4
 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 6/45 (13%)

Query: 50  IKFPTS----PGGVAYEREPVIPDWVLDYWHPLERAQYPEYFKRR 90
           +  P        G  +    V+PD ++     L++A+  E     
Sbjct: 256 VTVPIINFIDSNGDYWLGGGVVPDAIVLADEALDKAK--EIIAFH 298


>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 204

 Score = 24.8 bits (54), Expect = 2.8
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 6/41 (14%)

Query: 57 GGVAYEREPVIPDWVLDYWHPLERAQYPEYFKRREERKKEF 97
           G+  E E V   W+LD+            F  R+ R ++F
Sbjct: 3  AGLVAEAEAVAAGWMLDFLC----LSLCRAF--RDGRSEDF 37


>d1usra_ b.68.1.1 (A:) Paramyxovirus hemagglutinin-neuraminidase
          head domain {Newcastle disease virus [TaxId: 11176]}
          Length = 448

 Score = 23.6 bits (51), Expect = 8.1
 Identities = 5/13 (38%), Positives = 7/13 (53%)

Query: 46 HPSPIKFPTSPGG 58
          H + I  PT+  G
Sbjct: 36 HLNFIPAPTTGSG 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 507,286
Number of extensions: 23717
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 22
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)