BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8046
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FK3|A Chain A, Structure Of The Yeats Domain, Yaf9
pdb|3FK3|B Chain B, Structure Of The Yeats Domain, Yaf9
pdb|3FK3|C Chain C, Structure Of The Yeats Domain, Yaf9
Length = 164
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 14/130 (10%)
Query: 15 HTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYPVNVRILTKPPFEISETGWGEFELVIKI 74
HTH W ++++ ED++ +IKKV FKLH++YP VR + PPFE++ETGWGEF++ IK+
Sbjct: 34 HTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKV 93
Query: 75 YF-HDPNERPVTLYHMLKLFKTKDAACDATNSLLYNE-------------FYEEIIFNEP 120
YF + NE+ + YH L+L + ++ N N +++EI+FNEP
Sbjct: 94 YFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEP 153
Query: 121 TLTMYKTLSS 130
+K L S
Sbjct: 154 NEEFFKILXS 163
>pdb|3RLS|A Chain A, Crystal Structure Of Yeast Af-9 Homolog Protein Yaf9
pdb|3RLS|B Chain B, Crystal Structure Of Yeast Af-9 Homolog Protein Yaf9
Length = 175
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 14/130 (10%)
Query: 15 HTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYPVNVRILTKPPFEISETGWGEFELVIKI 74
HTH W ++++ ED++ +IKKV FKLH++YP VR + PPFE++ETGWGEF++ IK+
Sbjct: 31 HTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKV 90
Query: 75 YF-HDPNERPVTLYHMLKLFKTKDAACDATNSLLYNE-------------FYEEIIFNEP 120
YF + NE+ + YH L+L + ++ N N +++EI+FNEP
Sbjct: 91 YFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEP 150
Query: 121 TLTMYKTLSS 130
+K L S
Sbjct: 151 NEEFFKILMS 160
>pdb|3QRL|A Chain A, Crystal Structure Of The Taf14 Yeats Domain
Length = 140
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 28 KEDLAKYIKKVSFKLHESYPVNVRILTKPPFEISETGWGEFELVIKIYF 76
KE A KV + LH ++ R T PPF I E GWG F L I ++
Sbjct: 47 KEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGGFPLDISVFL 95
>pdb|2L7E|A Chain A, The Structure Of A Domain From Yeast
Length = 131
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 28 KEDLAKYIKKVSFKLHESYPVNVRILTKPPFEISETGWGEFELVIKIYF 76
KE A KV + LH ++ R T PPF I E GWG F L I ++
Sbjct: 44 KEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGGFPLDISVFL 92
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 133 PHTPASASLIAAHSVNFESAKASTLRGIIEAKKRLEREIGVYKDKISTKLF 183
P P S A+ V E LRG++ +L R+ + D+I +LF
Sbjct: 245 PRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLF 295
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 133 PHTPASASLIAAHSVNFESAKASTLRGIIEAKKRLEREIGVYKDKISTKLF 183
P P S A+ V E LRG++ +L R+ + D+I +LF
Sbjct: 245 PRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLF 295
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 133 PHTPASASLIAAHSVNFESAKASTLRGIIEAKKRLEREIGVYKDKISTKLF 183
P P S A+ V E LRG++ +L R+ + D+I +LF
Sbjct: 245 PRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLF 295
>pdb|4FTS|A Chain A, Crystal Structure Of The N363t Mutant Of The Flock House
Virus Capsid
pdb|4FTS|B Chain B, Crystal Structure Of The N363t Mutant Of The Flock House
Virus Capsid
pdb|4FTS|C Chain C, Crystal Structure Of The N363t Mutant Of The Flock House
Virus Capsid
Length = 407
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 104 NSLLYNEFYEEIIFNEPTLTMYKTLSSTVPHTPASASLIAAHSVNFESAKASTLRGIIEA 163
N++LY ++ +E L Y+T++ ++P ++IAA + + S ++ + A
Sbjct: 326 NAMLYQFGHDSPPLDEVALQEYRTVARSLP-----VAVIAAQTASMWERVKSIIKSSLAA 380
Query: 164 KKRLEREIGVYKDKIS 179
+ IGV IS
Sbjct: 381 ASNIPGPIGVAASGIS 396
>pdb|4FTE|A Chain A, Crystal Structure Of The D75n Mutant Capsid Of Flock House
Virus
pdb|4FTE|B Chain B, Crystal Structure Of The D75n Mutant Capsid Of Flock House
Virus
pdb|4FTE|C Chain C, Crystal Structure Of The D75n Mutant Capsid Of Flock House
Virus
Length = 407
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 104 NSLLYNEFYEEIIFNEPTLTMYKTLSSTVPHTPASASLIAAHSVNFESAKASTLRGIIEA 163
N++LY ++ +E L Y+T++ ++P ++IAA + + S ++ + A
Sbjct: 326 NAMLYQFGHDSPPLDEVALQEYRTVARSLP-----VAVIAAQNASMWERVKSIIKSSLAA 380
Query: 164 KKRLEREIGVYKDKIS 179
+ IGV IS
Sbjct: 381 ASNIPGPIGVAASGIS 396
>pdb|3N3Y|A Chain A, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
pdb|3N3Y|B Chain B, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
pdb|3N3Y|C Chain C, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
pdb|3N3Y|D Chain D, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
Length = 216
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 28 KEDLAKYIKKVSFKLHESYPVNVRIL 53
K DLAKY S+K H +Y +N R L
Sbjct: 150 KNDLAKYAMPESYKTHLAYSINARSL 175
>pdb|3AH5|A Chain A, Crystal Structure Of Flavin Dependent Thymidylate Synthase
Thyx From Helicobacter Pylori Complexed With Fad And
Dump
pdb|3AH5|B Chain B, Crystal Structure Of Flavin Dependent Thymidylate Synthase
Thyx From Helicobacter Pylori Complexed With Fad And
Dump
pdb|3AH5|C Chain C, Crystal Structure Of Flavin Dependent Thymidylate Synthase
Thyx From Helicobacter Pylori Complexed With Fad And
Dump
pdb|3AH5|D Chain D, Crystal Structure Of Flavin Dependent Thymidylate Synthase
Thyx From Helicobacter Pylori Complexed With Fad And
Dump
pdb|3AH5|E Chain E, Crystal Structure Of Flavin Dependent Thymidylate Synthase
Thyx From Helicobacter Pylori Complexed With Fad And
Dump
pdb|3AH5|F Chain F, Crystal Structure Of Flavin Dependent Thymidylate Synthase
Thyx From Helicobacter Pylori Complexed With Fad And
Dump
Length = 216
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 28 KEDLAKYIKKVSFKLHESYPVNVRIL 53
K DLAKY S+K H +Y +N R L
Sbjct: 142 KNDLAKYAMPESYKTHLAYSINARSL 167
>pdb|1SEQ|L Chain L, Fab Mnac13
Length = 213
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 26/129 (20%)
Query: 100 CDATNSLLYNEFYEEIIFNEPTLTMYKT--LSSTVPHTPASASLIAAHSVNFESAKAS-- 155
C A++S+ Y +Y++ P L +Y T L+S VP + + +S+ S +AS
Sbjct: 23 CSASSSVSYMHWYQQKSGTSPVLLIYTTSNLASGVPSRFSGSGSGTFYSLTISSVEASDA 82
Query: 156 -------------TLRGIIEAK-KRLEREIGVYKDKISTKLFTHCDSYVLCPKNNF---- 197
T G + + KR + V S++ T + V+C NNF
Sbjct: 83 ADYYCHQWSSYPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKS 142
Query: 198 ----WQIDN 202
W+ID
Sbjct: 143 INSKWKIDG 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,549,128
Number of Sequences: 62578
Number of extensions: 258229
Number of successful extensions: 711
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 15
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)