Query psy8046
Match_columns 214
No_of_seqs 192 out of 406
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 17:02:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rls_A YAF9, protein AF-9 homo 100.0 3.5E-49 1.2E-53 331.4 15.4 137 2-138 15-168 (175)
2 3qrl_A Transcription initiatio 100.0 2.2E-37 7.5E-42 251.8 12.2 110 11-133 27-139 (140)
3 2l5g_B Putative uncharacterize 76.9 3.9 0.00013 26.7 4.3 30 156-185 10-39 (42)
4 2lyx_A Uncharacterized protein 44.7 55 0.0019 24.1 5.9 21 66-86 60-80 (87)
5 1use_A VAsp, vasodilator-stimu 32.5 90 0.0031 20.4 4.8 29 156-184 8-37 (45)
6 2lw1_A ABC transporter ATP-bin 31.9 66 0.0023 22.9 4.6 33 148-180 15-47 (89)
7 1i7k_A Ubiquitin-conjugating e 27.7 75 0.0026 25.6 4.7 34 14-47 57-90 (179)
8 3h8k_A Ubiquitin-conjugating e 27.3 1.3E+02 0.0045 23.3 6.0 36 12-47 29-64 (164)
9 2onu_A Ubiquitin-conjugating e 27.1 1.5E+02 0.0051 22.9 6.2 35 13-47 25-59 (152)
10 2gjd_A Ubiquitin-conjugating e 26.5 1.4E+02 0.0047 23.2 5.9 34 14-47 36-69 (157)
11 2aak_A UBC1, ubiquitin conjuga 26.1 1.6E+02 0.0055 22.6 6.2 35 13-47 30-64 (152)
12 4ghu_A TNF receptor-associated 25.9 1.3E+02 0.0046 24.1 5.9 44 157-206 9-52 (198)
13 1zdn_A Ubiquitin-conjugating e 23.4 1.6E+02 0.0055 22.8 5.8 34 14-47 40-73 (158)
14 2yy0_A C-MYC-binding protein; 23.3 1.1E+02 0.0038 20.2 4.1 31 148-179 20-50 (53)
15 2jo8_A Serine/threonine-protei 23.2 94 0.0032 20.8 3.7 31 157-187 16-46 (51)
16 1zym_A Enzyme I; phosphotransf 22.8 1E+02 0.0035 26.2 4.8 27 155-181 38-64 (258)
17 2grr_A Ubiquitin-conjugating e 22.4 1.9E+02 0.0064 22.5 6.0 35 13-47 38-72 (161)
18 1jat_A Ubiquitin-conjugating e 22.2 2.1E+02 0.0073 22.0 6.3 34 14-47 32-65 (155)
19 1fxt_A Ubiquitin-conjugating e 22.2 2.1E+02 0.0071 21.8 6.2 35 13-47 28-62 (149)
20 2wuj_A Septum site-determining 22.1 99 0.0034 20.5 3.7 36 147-182 18-54 (57)
21 2fxo_A Myosin heavy chain, car 21.4 1.5E+02 0.0051 22.5 5.1 30 154-183 96-125 (129)
22 1bgc_A Granulocyte colony-stim 21.4 77 0.0026 26.2 3.6 35 155-196 12-46 (174)
23 3rz3_A Ubiquitin-conjugating e 21.3 1.8E+02 0.0063 23.1 5.9 35 13-47 34-68 (183)
24 2h2y_A Ubiquitin-conjugating e 21.3 2E+02 0.0069 21.7 5.9 34 14-47 47-80 (136)
25 1ayz_A UBC2, ubiquitin-conjuga 20.8 2.2E+02 0.0077 22.4 6.2 34 14-47 31-64 (169)
26 2fo3_A Ubiquitin-conjugating e 20.6 2.2E+02 0.0075 21.1 5.9 34 14-47 33-66 (125)
27 4gpr_A Ubiquitin-conjugating e 20.4 2E+02 0.0069 22.0 5.8 34 14-47 31-64 (151)
28 3v26_X ORF3, ORF95, probable s 20.3 99 0.0034 22.4 3.7 23 158-180 72-94 (101)
29 1alu_A Interleukin-6; cytokine 20.2 65 0.0022 26.7 2.9 30 158-194 25-54 (186)
No 1
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=100.00 E-value=3.5e-49 Score=331.39 Aligned_cols=137 Identities=37% Similarity=0.760 Sum_probs=120.0
Q ss_pred CCccccccC---CCCCCeeeEEEEEecCCCcCcccceeeEEEEeCCCCCCceeeeecCCcEEEEeeEeeEEEEEEEEEeC
Q psy8046 2 EPLQMGKKR---ESDGHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYPVNVRILTKPPFEISETGWGEFELVIKIYFHD 78 (214)
Q Consensus 2 ~~~~lgkK~---~~~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~GWGEF~I~I~I~F~d 78 (214)
.|++||+++ .++++||+|+|||||.+++|+++||+||+|+|||||+||+|++++|||+|+|+|||||+|.|+|||++
T Consensus 15 ~a~~l~~~~~~~~~~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~GWGeF~i~I~i~F~~ 94 (175)
T 3rls_A 15 TAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVE 94 (175)
T ss_dssp EEEECCSCCCTTCCTTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSSCEEEECSSSEEEEEEESSCCEEEEEEEECG
T ss_pred eeEECCccccCCCCCCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCCCcEEEeCCCCEEEEeEEeeEEEEEEEEEeC
Confidence 478999764 35789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCcEEEEEeecccCCCccc-------------ccCCCCceeEEEEEEEEecCCCHHHHHHHhcCCCCCCCc
Q psy8046 79 -PNERPVTLYHMLKLFKTKDAA-------------CDATNSLLYNEFYEEIIFNEPTLTMYKTLSSTVPHTPAS 138 (214)
Q Consensus 79 -~~ekpv~i~H~L~L~~~~~~~-------------~~~~~~~v~se~ydeIvF~nPte~f~~~L~~~~~~~~~~ 138 (214)
++++|++|+|+|+|++.+... +..++++|+||+||||||+||++.||++|+++++..+|+
T Consensus 95 ~~~ek~i~i~H~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~se~ydEivF~ePte~f~~~L~~~p~~~lp~ 168 (175)
T 3rls_A 95 EANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLPS 168 (175)
T ss_dssp GGCCCCEEEEEECCCCC-----------------------CCEEEEEEEEEEESSCCHHHHHHHHHSTTCCSCS
T ss_pred CCCCccEEEEEEEEecCCCCccccccccccccccccccCCCceEEEEeccEEEeCCCHHHHHHHHhCCCccCCC
Confidence 678999999999999876321 112478999999999999999999999999999987775
No 2
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=100.00 E-value=2.2e-37 Score=251.79 Aligned_cols=110 Identities=21% Similarity=0.397 Sum_probs=99.3
Q ss_pred CCCCCeeeEE--EEEecCCCcCcc-cceeeEEEEeCCCCCCceeeeecCCcEEEEeeEeeEEEEEEEEEeCCCCCcEEEE
Q psy8046 11 ESDGHTHEWK--VYIKPYYKEDLA-KYIKKVSFKLHESYPVNVRILTKPPFEISETGWGEFELVIKIYFHDPNERPVTLY 87 (214)
Q Consensus 11 ~~~~~tH~Wt--VyVr~~~~edls-~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~GWGEF~I~I~I~F~d~~ekpv~i~ 87 (214)
.++.++|+|+ |||||.+++|++ +||+||+|+|||||+||+|++++|||+|+|+|||||+|.|+|||++.+ ++++|.
T Consensus 27 ~eg~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~np~r~v~~pPF~v~e~GWGeF~i~I~i~f~~~~-~~~~i~ 105 (140)
T 3qrl_A 27 VENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGGFPLDISVFLLEKA-GERKIP 105 (140)
T ss_dssp BTTBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSSCEEEECSTTCCEEEEESSCCCEEEEEEEGGGT-EEEEEE
T ss_pred CCCCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCCCeEEEcCCCcEEEEEEeeeEEEEEEEEEecCC-CcEEEE
Confidence 3445679999 999999988885 899999999999999999999999999999999999999999999854 578999
Q ss_pred EeecccCCCcccccCCCCceeEEEEEEEEecCCCHHHHHHHhcCCC
Q psy8046 88 HMLKLFKTKDAACDATNSLLYNEFYEEIIFNEPTLTMYKTLSSTVP 133 (214)
Q Consensus 88 H~L~L~~~~~~~~~~~~~~v~se~ydeIvF~nPte~f~~~L~~~~~ 133 (214)
|+|+|+++.+ +.+++|+|+||++.|+++|+.+||
T Consensus 106 H~L~f~~~~y------------~~~h~i~f~np~~~l~~~L~~~Gp 139 (140)
T 3qrl_A 106 HDLNFLQESY------------EVEHVIQIPLNKPLLTEELAKSGS 139 (140)
T ss_dssp ECCCSSSSEE------------EEEEEEEEESCSHHHHHHHTTTSC
T ss_pred EEEEeCCCCC------------cceEEEEECCCCHHHHHHHHHhCC
Confidence 9999998764 247799999999999999988876
No 3
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=76.93 E-value=3.9 Score=26.67 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8046 156 TLRGIIEAKKRLEREIGVYKDKISTKLFTH 185 (214)
Q Consensus 156 el~~i~~a~~~v~~eI~~lk~~l~~~~~~~ 185 (214)
-++|+++-..++.+.|.+|+.++++.+..+
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478888888899999999999998877654
No 4
>2lyx_A Uncharacterized protein YQZG; PF13028, DUF3889, structural genomics, unknown function; NMR {Bacillus subtilis subsp}
Probab=44.66 E-value=55 Score=24.13 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=17.2
Q ss_pred eeEEEEEEEEEeCCCCCcEEE
Q psy8046 66 GEFELVIKIYFHDPNERPVTL 86 (214)
Q Consensus 66 GEF~I~I~I~F~d~~ekpv~i 86 (214)
-+|.+.+.|+|.+.+++-++|
T Consensus 60 kefgV~V~I~f~p~T~kv~sI 80 (87)
T 2lyx_A 60 KEFGVFVTISFDPYSQKVNKI 80 (87)
T ss_dssp EEEEEEEEEEECTTTCCEEEE
T ss_pred EEEEEEEEEEEECCCCeEEEE
Confidence 589999999999987775554
No 5
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=32.55 E-value=90 Score=20.44 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=18.1
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhhhh
Q psy8046 156 TLRGIIE-AKKRLEREIGVYKDKISTKLFT 184 (214)
Q Consensus 156 el~~i~~-a~~~v~~eI~~lk~~l~~~~~~ 184 (214)
+++++.. --..|+.||+++|+.+...++.
T Consensus 8 dle~~KqEIL~E~RkElqK~K~EIIeAi~~ 37 (45)
T 1use_A 8 DLQRVKQELLEEVKKELQKVKEEIIEAFVQ 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444 3345777888888777776654
No 6
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.94 E-value=66 Score=22.93 Aligned_cols=33 Identities=9% Similarity=0.189 Sum_probs=26.9
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8046 148 NFESAKASTLRGIIEAKKRLEREIGVYKDKIST 180 (214)
Q Consensus 148 ~~~~~e~~el~~i~~a~~~v~~eI~~lk~~l~~ 180 (214)
..+-+++++++.|.....++.++|+.|..+|..
T Consensus 15 KLSykeqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 15 KLSYKLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344557899999999999999999988888754
No 7
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=27.68 E-value=75 Score=25.61 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=22.8
Q ss_pred CCeeeEEEEEecCCCcCcccceeeEEEEeCCCCC
Q psy8046 14 GHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYP 47 (214)
Q Consensus 14 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 47 (214)
+....|.+-+.|+.+..-..=+=++.+.+.+.|+
T Consensus 57 ~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP 90 (179)
T 1i7k_A 57 DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYP 90 (179)
T ss_dssp TEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTT
T ss_pred CcccccEEEEECCCCCCcCCCEEEEEEECCCcCC
Confidence 4788999999987654433334556666677775
No 8
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=27.31 E-value=1.3e+02 Score=23.33 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=25.9
Q ss_pred CCCCeeeEEEEEecCCCcCcccceeeEEEEeCCCCC
Q psy8046 12 SDGHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYP 47 (214)
Q Consensus 12 ~~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 47 (214)
+++....|.+-|.|+.+..-..=+=++.+.+.+.|+
T Consensus 29 ~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP 64 (164)
T 3h8k_A 29 NEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 64 (164)
T ss_dssp STTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCC
Confidence 334688999999987665544455667777788876
No 9
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=27.10 E-value=1.5e+02 Score=22.95 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=22.9
Q ss_pred CCCeeeEEEEEecCCCcCcccceeeEEEEeCCCCC
Q psy8046 13 DGHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYP 47 (214)
Q Consensus 13 ~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 47 (214)
++....|.+-+.|+.+..-..=+=++.+.+.+.|+
T Consensus 25 ~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 59 (152)
T 2onu_A 25 NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYP 59 (152)
T ss_dssp TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred cCccceEEEEEECCCCCcccceEEEEEEcCcccCC
Confidence 35788999999987654433334455666666665
No 10
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=26.47 E-value=1.4e+02 Score=23.19 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCeeeEEEEEecCCCcCcccceeeEEEEeCCCCC
Q psy8046 14 GHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYP 47 (214)
Q Consensus 14 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 47 (214)
+....|.+-|.|+.+..-..=+=++...+.++|+
T Consensus 36 ~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP 69 (157)
T 2gjd_A 36 MDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYP 69 (157)
T ss_dssp EEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTT
T ss_pred CcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCC
Confidence 4788999999987654333334456666677775
No 11
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=26.08 E-value=1.6e+02 Score=22.56 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=22.4
Q ss_pred CCCeeeEEEEEecCCCcCcccceeeEEEEeCCCCC
Q psy8046 13 DGHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYP 47 (214)
Q Consensus 13 ~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 47 (214)
++....|.+-+.|+.+..-..=+=++.+.+.++|+
T Consensus 30 ~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 64 (152)
T 2aak_A 30 DNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYP 64 (152)
T ss_dssp TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCC
Confidence 34688899999887544333334456666667765
No 12
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=25.88 E-value=1.3e+02 Score=24.13 Aligned_cols=44 Identities=9% Similarity=0.087 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeecCCcceeeccchhc
Q psy8046 157 LRGIIEAKKRLEREIGVYKDKISTKLFTHCDSYVLCPKNNFWQIDNLKNH 206 (214)
Q Consensus 157 l~~i~~a~~~v~~eI~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (214)
++++..--..-..+|++|++++...+...++.+ -.|.|+|....
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~------~~w~I~nfS~~ 52 (198)
T 4ghu_A 9 LSRHDQMLSVHDIRLADMDLRFQVLETASYNGV------LIWKIRDYKRR 52 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSE------EEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccE------EEEEECCHHHH
Confidence 344444334445689999999988876544433 36999987544
No 13
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=23.38 E-value=1.6e+02 Score=22.79 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=21.4
Q ss_pred CCeeeEEEEEecCCCcCcccceeeEEEEeCCCCC
Q psy8046 14 GHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYP 47 (214)
Q Consensus 14 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 47 (214)
+....|.+-+.|+.+..-..=+=++.+.+.++|+
T Consensus 40 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 73 (158)
T 1zdn_A 40 EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFP 73 (158)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CChhheeEEEECCCCCCccCcEEEEEEEcCCCCC
Confidence 4678899999987653333334455556666665
No 14
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.27 E-value=1.1e+02 Score=20.22 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=20.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8046 148 NFESAKASTLRGIIEAKKRLEREIGVYKDKIS 179 (214)
Q Consensus 148 ~~~~~e~~el~~i~~a~~~v~~eI~~lk~~l~ 179 (214)
|++.+ +.|...|.+-...+.+++++|+.+|.
T Consensus 20 d~eaL-k~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELL-RLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44433 34666676777777777888777775
No 15
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=23.23 E-value=94 Score=20.81 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy8046 157 LRGIIEAKKRLEREIGVYKDKISTKLFTHCD 187 (214)
Q Consensus 157 l~~i~~a~~~v~~eI~~lk~~l~~~~~~~~~ 187 (214)
..++...-.....||.+++.+...|++...|
T Consensus 16 ~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIld 46 (51)
T 2jo8_A 16 QKRLLALDPMMEQEIEEIRQKYQSKRQPILD 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHhHhhHHH
Confidence 3456667778899999999999999876554
No 16
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=22.81 E-value=1e+02 Score=26.24 Aligned_cols=27 Identities=7% Similarity=0.227 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8046 155 STLRGIIEAKKRLEREIGVYKDKISTK 181 (214)
Q Consensus 155 ~el~~i~~a~~~v~~eI~~lk~~l~~~ 181 (214)
.|+.|+..|..++++++..++++...+
T Consensus 38 ~E~~rl~~Al~~~~~eL~~l~~~~~~~ 64 (258)
T 1zym_A 38 QEVERFLSGRAKASAQLETIKTKAGET 64 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999998887543
No 17
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=22.35 E-value=1.9e+02 Score=22.48 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=22.7
Q ss_pred CCCeeeEEEEEecCCCcCcccceeeEEEEeCCCCC
Q psy8046 13 DGHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYP 47 (214)
Q Consensus 13 ~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 47 (214)
++....|.+-+.|+.+..-..=+=++...+.++|+
T Consensus 38 ~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 72 (161)
T 2grr_A 38 TMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYP 72 (161)
T ss_dssp CEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CCCccEEEEEEECCCCCCccCCEEEEEEEcCcccC
Confidence 35788999999987543333333456666677775
No 18
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=22.24 E-value=2.1e+02 Score=21.97 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=22.0
Q ss_pred CCeeeEEEEEecCCCcCcccceeeEEEEeCCCCC
Q psy8046 14 GHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYP 47 (214)
Q Consensus 14 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 47 (214)
+....|.+-+.|+.+..-..=+=++.+.+.+.|+
T Consensus 32 ~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP 65 (155)
T 1jat_A 32 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYP 65 (155)
T ss_dssp TEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTT
T ss_pred CchhEEEEEEECCCCCCccCcEEEEEEEcCCCCC
Confidence 4688999999987654333334455566666665
No 19
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=22.22 E-value=2.1e+02 Score=21.83 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=21.9
Q ss_pred CCCeeeEEEEEecCCCcCcccceeeEEEEeCCCCC
Q psy8046 13 DGHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYP 47 (214)
Q Consensus 13 ~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 47 (214)
++....|.+-+.|+.+..-..=+=++.+.+.+.|+
T Consensus 28 ~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP 62 (149)
T 1fxt_A 28 ESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62 (149)
T ss_dssp SSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTT
T ss_pred CCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCC
Confidence 33688999999987544333334455566666665
No 20
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.13 E-value=99 Score=20.49 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=25.5
Q ss_pred CChhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8046 147 VNFESAKAS-TLRGIIEAKKRLEREIGVYKDKISTKL 182 (214)
Q Consensus 147 ~~~~~~e~~-el~~i~~a~~~v~~eI~~lk~~l~~~~ 182 (214)
..|+..|-+ -|+.+...-..+.+++++|++++....
T Consensus 18 rGY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 18 RGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp TEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356544443 578888888889999999998887644
No 21
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=21.42 E-value=1.5e+02 Score=22.50 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8046 154 ASTLRGIIEAKKRLEREIGVYKDKISTKLF 183 (214)
Q Consensus 154 ~~el~~i~~a~~~v~~eI~~lk~~l~~~~~ 183 (214)
.+....|.++++++..++.+|+++|.....
T Consensus 96 ee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 96 EEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888899999999988877653
No 22
>1bgc_A Granulocyte colony-stimulating factor; cytokine; 1.70A {Bos taurus} SCOP: a.26.1.1 PDB: 1rhg_A 2d9q_A* 1cd9_A* 1pgr_A 1bge_A 1bgd_A 1gnc_A
Probab=21.37 E-value=77 Score=26.16 Aligned_cols=35 Identities=17% Similarity=0.419 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeecCCc
Q psy8046 155 STLRGIIEAKKRLEREIGVYKDKISTKLFTHCDSYVLCPKNN 196 (214)
Q Consensus 155 ~el~~i~~a~~~v~~eI~~lk~~l~~~~~~~~~~~~~~~~~~ 196 (214)
.-|-+..+-.++|..+|.+|++++ |+-|-+|-+.+
T Consensus 12 ~fl~k~~e~ir~I~~~~~~L~kel-------C~~~~~C~~s~ 46 (174)
T 1bgc_A 12 SFLLKCLEQVRKIQADGAELQERL-------CAAHKLCHPEE 46 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------ccccCCccchH
Confidence 467777777789999999999888 99999997643
No 23
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=21.34 E-value=1.8e+02 Score=23.11 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=24.8
Q ss_pred CCCeeeEEEEEecCCCcCcccceeeEEEEeCCCCC
Q psy8046 13 DGHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYP 47 (214)
Q Consensus 13 ~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 47 (214)
++....|.+-+.|+.+..-..=+=++...+-+.|+
T Consensus 34 ~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP 68 (183)
T 3rz3_A 34 EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYP 68 (183)
T ss_dssp TCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred ccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCC
Confidence 45788999999987655444445567777778876
No 24
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=21.25 E-value=2e+02 Score=21.73 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=20.7
Q ss_pred CCeeeEEEEEecCCCcCcccceeeEEEEeCCCCC
Q psy8046 14 GHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYP 47 (214)
Q Consensus 14 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 47 (214)
+....|.+-+.|+.+..-..=+=++.+.+.+.|+
T Consensus 47 ~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP 80 (136)
T 2h2y_A 47 SNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80 (136)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred ccccccEEEEECCCCCceeCCEEEEEEEeCCCCC
Confidence 4678899988887543333334445555566664
No 25
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=20.80 E-value=2.2e+02 Score=22.39 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=21.1
Q ss_pred CCeeeEEEEEecCCCcCcccceeeEEEEeCCCCC
Q psy8046 14 GHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYP 47 (214)
Q Consensus 14 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 47 (214)
+....|.+-+.|+.+..-..=+=++.+.+-+.|+
T Consensus 31 ~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP 64 (169)
T 1ayz_A 31 DNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYP 64 (169)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CccccceEEEECCCCCCcCCCEEEEEEECcccCC
Confidence 4688899988887543333334445555666665
No 26
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=20.63 E-value=2.2e+02 Score=21.11 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=20.3
Q ss_pred CCeeeEEEEEecCCCcCcccceeeEEEEeCCCCC
Q psy8046 14 GHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYP 47 (214)
Q Consensus 14 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 47 (214)
+....|.+-+.|+.+..-..=+=++.+.+-+.|+
T Consensus 33 ~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP 66 (125)
T 2fo3_A 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66 (125)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred chhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCC
Confidence 4678899988887543332233445555556654
No 27
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=20.43 E-value=2e+02 Score=21.99 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=24.3
Q ss_pred CCeeeEEEEEecCCCcCcccceeeEEEEeCCCCC
Q psy8046 14 GHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYP 47 (214)
Q Consensus 14 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 47 (214)
+....|.+-+.|+.+..-..=+=++.+.+-++|+
T Consensus 31 ~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 64 (151)
T 4gpr_A 31 DDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64 (151)
T ss_dssp SCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTT
T ss_pred CCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCC
Confidence 4678899999987655544445566777777775
No 28
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=20.31 E-value=99 Score=22.45 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8046 158 RGIIEAKKRLEREIGVYKDKIST 180 (214)
Q Consensus 158 ~~i~~a~~~v~~eI~~lk~~l~~ 180 (214)
..|+.|-.++..+|.++|++|++
T Consensus 72 aAID~a~dkLerQLrK~K~k~~~ 94 (101)
T 3v26_X 72 AAIDGLIDKLARQLTKHKDKLKQ 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 35778888899999999988875
No 29
>1alu_A Interleukin-6; cytokine, receptor, signaling, glycoprotein; HET: TLA; 1.90A {Homo sapiens} SCOP: a.26.1.1 PDB: 1il6_A 2il6_A 1p9m_B
Probab=20.15 E-value=65 Score=26.73 Aligned_cols=30 Identities=13% Similarity=0.337 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeecC
Q psy8046 158 RGIIEAKKRLEREIGVYKDKISTKLFTHCDSYVLCPK 194 (214)
Q Consensus 158 ~~i~~a~~~v~~eI~~lk~~l~~~~~~~~~~~~~~~~ 194 (214)
+++.+..++|...|+.+++++ |+.|-.|-.
T Consensus 25 ~~~~~~i~~il~~i~~l~~el-------C~~~~~C~~ 54 (186)
T 1alu_A 25 ERIDKQIRYILDGISALRKET-------CNKSNMCES 54 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHhccCcch
Confidence 577777788888888888776 888888854
Done!