RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8046
         (214 letters)



>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
          yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
          Length = 136

 Score = 26.9 bits (59), Expect = 1.2
 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 3/65 (4%)

Query: 11 ESDGHTHEWKVYIKPYYKEDLAKYIKKVSFKLHESYPVN---VRILTKPPFEISETGWGE 67
            D    +W   I      +    I  +S     +YP +   V  ++K          GE
Sbjct: 32 SDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGE 91

Query: 68 FELVI 72
           +   
Sbjct: 92 VQTDF 96


>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 155

 Score = 25.2 bits (54), Expect = 5.3
 Identities = 5/63 (7%), Positives = 17/63 (26%), Gaps = 1/63 (1%)

Query: 35 IKKVSFKLHESYPVNVRILTKPPFEISETGWGEFELVIKIYFHDPNERPVTLYHMLKLFK 94
          I      L         ++  P F   + G+ +  + + +           +   +   +
Sbjct: 11 IGNFGMHLKCQEEEKPVVIHSPGFYTGKPGY-KLCMRLHLQLPTAQRCANYISLFVHTMQ 69

Query: 95 TKD 97
           + 
Sbjct: 70 GEY 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 823,396
Number of extensions: 37825
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 19
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)