BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8050
         (311 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
          Length = 190

 Score =  144 bits (363), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 68/129 (52%), Positives = 86/129 (66%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
           GK+++    L  H RTH+GEKPY+C +C KSFSQ ANL AH RTH+GEKP+ CP C + F
Sbjct: 56  GKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSF 115

Query: 182 SQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSG 241
           SQ + +  H RTH+GE+PY+C  C K+FS    L  H R H+GEKPY+C  C   FS+  
Sbjct: 116 SQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRD 175

Query: 242 NLNRHMRVH 250
            LN H R H
Sbjct: 176 ALNVHQRTH 184



 Score =  144 bits (363), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 88/129 (68%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
           GK+++R   L  H RTH+GEKPY+C +C KSFS   +LT H RTH+GEKP++CP C + F
Sbjct: 28  GKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSF 87

Query: 182 SQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSG 241
           SQ +++  H RTH+GE+PY C  C K+FS  + L  H R H+GEKPY+C  C   FS+  
Sbjct: 88  SQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRED 147

Query: 242 NLNRHMRVH 250
           NL+ H R H
Sbjct: 148 NLHTHQRTH 156



 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 73/111 (65%)

Query: 140 GEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           GEKPY C +C KSFS++ +L  H RTH+GEKP++CP C + FS    +T H RTH+GE+P
Sbjct: 18  GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77

Query: 200 YRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           Y+C  C K+FS  + L  H R H+GEKPY C  C   FSQ  +L  H R H
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128



 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 77/105 (73%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
           GK++++ + L+ H RTH+GEKPY C +C KSFSQ A+L AH RTH+GEKP++CP C + F
Sbjct: 84  GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF 143

Query: 182 SQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           S+  ++ TH RTH+GE+PY+C  C K+FS    L  H R H+G+K
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188



 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 63/109 (57%), Gaps = 1/109 (0%)

Query: 168 GEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           GEKP+ CP C + FS+S  +  H RTH+GE+PY+C  C K+FSD   LT+H R H+GEKP
Sbjct: 18  GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77

Query: 228 YQCKLCLLRFSQSGNLNRHMRVH-GSQYNMLPVIYMGVNQVCSNIVDQR 275
           Y+C  C   FSQ  NL  H R H G +    P      +Q+      QR
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126


>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
          Length = 87

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 64/86 (74%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPY 200
           EKPY+C +C KSFSQ++NL  H RTH+GEKP++CP C + FSQSS +  H RTH+GE+PY
Sbjct: 2   EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61

Query: 201 RCRLCKKAFSDSSTLTKHLRIHSGEK 226
           +C  C K+FS S  L++H R H  +K
Sbjct: 62  KCPECGKSFSRSDHLSRHQRTHQNKK 87



 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 60/82 (73%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPY 228
           EKP++CP C + FSQSS++  H RTH+GE+PY+C  C K+FS SS L KH R H+GEKPY
Sbjct: 2   EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61

Query: 229 QCKLCLLRFSQSGNLNRHMRVH 250
           +C  C   FS+S +L+RH R H
Sbjct: 62  KCPECGKSFSRSDHLSRHQRTH 83



 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 59/77 (76%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
           GK++++ S L+ H RTH+GEKPY+C +C KSFSQ+++L  H RTH+GEKP++CP C + F
Sbjct: 11  GKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSF 70

Query: 182 SQSSSVTTHMRTHSGER 198
           S+S  ++ H RTH  ++
Sbjct: 71  SRSDHLSRHQRTHQNKK 87


>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
          Length = 119

 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 4/105 (3%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE--DCNKSFSQAANLTAHVRTHSGEKPFRCPICDR 179
            K Y + S L+ H R H+GEKPY+C+  DC + FS++  L  H R H+G KPF+C  C R
Sbjct: 15  NKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQR 74

Query: 180 RFSQSSSVTTHMRTHSGERPYRCRL--CKKAFSDSSTLTKHLRIH 222
           +FS+S  + TH RTH+GE+P+ CR   C+K F+ S  L +H  +H
Sbjct: 75  KFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119



 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 74/118 (62%), Gaps = 6/118 (5%)

Query: 139 SGEKPYRCE--DCNKSFSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSSVTTHMRTH 194
           S ++P+ C    CNK + + ++L  H R H+GEKP++C    C+RRFS+S  +  H R H
Sbjct: 2   SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKL--CLLRFSQSGNLNRHMRVH 250
           +G +P++C+ C++ FS S  L  H R H+GEKP+ C+   C  +F++S  L RH  +H
Sbjct: 62  TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119


>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 64/89 (71%), Gaps = 2/89 (2%)

Query: 169 EKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+P+ CP+  CDRRFSQS S+T H+R H+G++P++CR+C + FS S  LT H+R H+GEK
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 227 PYQCKLCLLRFSQSGNLNRHMRVHGSQYN 255
           P+ C +C  +F++S    RH ++H  Q +
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQKD 90



 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 63/88 (71%), Gaps = 2/88 (2%)

Query: 141 EKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           E+PY C  E C++ FSQ+ +LT H+R H+G+KPF+C IC R FS+S  +TTH+RTH+GE+
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 199 PYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           P+ C +C + F+ S    +H +IH  +K
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89



 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 51/72 (70%)

Query: 123 KTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFS 182
           + +++  +L  H+R H+G+KP++C  C ++FS++ +LT H+RTH+GEKPF C IC R+F+
Sbjct: 14  RRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73

Query: 183 QSSSVTTHMRTH 194
           +S     H + H
Sbjct: 74  RSDERKRHTKIH 85



 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 120 IPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           I  + ++R   L TH+RTH+GEKP+ C+ C + F+++     H + H  +K
Sbjct: 39  ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
 pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
          Length = 90

 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 64/89 (71%), Gaps = 2/89 (2%)

Query: 169 EKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+P+ CP+  CDRRFS SS++T H+R H+G++P++CR+C + FS S  LT H+R H+GEK
Sbjct: 2   ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 227 PYQCKLCLLRFSQSGNLNRHMRVHGSQYN 255
           P+ C +C  +F++S    RH ++H  Q +
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQKD 90



 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 63/88 (71%), Gaps = 2/88 (2%)

Query: 141 EKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           E+PY C  E C++ FS ++NLT H+R H+G+KPF+C IC R FS+S  +TTH+RTH+GE+
Sbjct: 2   ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 199 PYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           P+ C +C + F+ S    +H +IH  +K
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89



 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 50/73 (68%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
            + ++  S L  H+R H+G+KP++C  C ++FS++ +LT H+RTH+GEKPF C IC R+F
Sbjct: 13  DRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72

Query: 182 SQSSSVTTHMRTH 194
           ++S     H + H
Sbjct: 73  ARSDERKRHTKIH 85



 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 120 IPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           I  + ++R   L TH+RTH+GEKP+ C+ C + F+++     H + H  +K
Sbjct: 39  ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
 pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
          Length = 90

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 61/88 (69%), Gaps = 2/88 (2%)

Query: 141 EKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           E+PY C  E C++ FSQ  NL  H+R H+G+KPF+C IC R FSQ +S+  H+RTH+GE+
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61

Query: 199 PYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           P+ C +C + F+   T T+H +IH  +K
Sbjct: 62  PFACDICGRKFATLHTRTRHTKIHLRQK 89



 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 62/89 (69%), Gaps = 2/89 (2%)

Query: 169 EKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+P+ CP+  CDRRFSQ +++ TH+R H+G++P++CR+C + FS  ++L  H+R H+GEK
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61

Query: 227 PYQCKLCLLRFSQSGNLNRHMRVHGSQYN 255
           P+ C +C  +F+      RH ++H  Q +
Sbjct: 62  PFACDICGRKFATLHTRTRHTKIHLRQKD 90



 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 52/72 (72%)

Query: 123 KTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFS 182
           + +++ + L TH+R H+G+KP++C  C ++FSQ A+L AH+RTH+GEKPF C IC R+F+
Sbjct: 14  RRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFA 73

Query: 183 QSSSVTTHMRTH 194
              + T H + H
Sbjct: 74  TLHTRTRHTKIH 85



 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 120 IPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           I  + +++ ++L  H+RTH+GEKP+ C+ C + F+     T H + H  +K
Sbjct: 39  ICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89


>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
 pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
 pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
          Length = 90

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 64/89 (71%), Gaps = 2/89 (2%)

Query: 169 EKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+P+ CP+  CDRRFS+S+ +T H+R H+G++P++CR+C + FS S  LT H+R H+GEK
Sbjct: 2   ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 227 PYQCKLCLLRFSQSGNLNRHMRVHGSQYN 255
           P+ C +C  +F++S    RH ++H  Q +
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQKD 90



 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 64/88 (72%), Gaps = 2/88 (2%)

Query: 141 EKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           E+PY C  E C++ FS++A+LT H+R H+G+KPF+C IC R FS+S  +TTH+RTH+GE+
Sbjct: 2   ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 199 PYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           P+ C +C + F+ S    +H +IH  +K
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89



 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 51/73 (69%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
            + ++R + L  H+R H+G+KP++C  C ++FS++ +LT H+RTH+GEKPF C IC R+F
Sbjct: 13  DRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72

Query: 182 SQSSSVTTHMRTH 194
           ++S     H + H
Sbjct: 73  ARSDERKRHTKIH 85



 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 120 IPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           I  + ++R   L TH+RTH+GEKP+ C+ C + F+++     H + H  +K
Sbjct: 39  ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
 pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
          Length = 90

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 64/89 (71%), Gaps = 2/89 (2%)

Query: 169 EKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+P+ CP+  CDRRFS+S+ +T H+R H+G++P++CR+C + FS S  LT H+R H+GEK
Sbjct: 2   ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 227 PYQCKLCLLRFSQSGNLNRHMRVHGSQYN 255
           P+ C +C  +F++S    RH ++H  Q +
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQKD 90



 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 63/88 (71%), Gaps = 2/88 (2%)

Query: 141 EKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           E+PY C  E C++ FS++A LT H+R H+G+KPF+C IC R FS+S  +TTH+RTH+GE+
Sbjct: 2   ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 199 PYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           P+ C +C + F+ S    +H +IH  +K
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89



 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 51/73 (69%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
            + ++R + L  H+R H+G+KP++C  C ++FS++ +LT H+RTH+GEKPF C IC R+F
Sbjct: 13  DRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72

Query: 182 SQSSSVTTHMRTH 194
           ++S     H + H
Sbjct: 73  ARSDERKRHTKIH 85



 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 120 IPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           I  + ++R   L TH+RTH+GEKP+ C+ C + F+++     H + H  +K
Sbjct: 39  ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
 pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 63/89 (70%), Gaps = 2/89 (2%)

Query: 169 EKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+P+ CP+  CDRRFS+S  +T H+R H+G++P++CR+C + FS S  LT H+R H+GEK
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 227 PYQCKLCLLRFSQSGNLNRHMRVHGSQYN 255
           P+ C +C  +F++S    RH ++H  Q +
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQKD 90



 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 62/88 (70%), Gaps = 2/88 (2%)

Query: 141 EKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           E+PY C  E C++ FS++  LT H+R H+G+KPF+C IC R FS+S  +TTH+RTH+GE+
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 199 PYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           P+ C +C + F+ S    +H +IH  +K
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89



 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 50/73 (68%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
            + ++R   L  H+R H+G+KP++C  C ++FS++ +LT H+RTH+GEKPF C IC R+F
Sbjct: 13  DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72

Query: 182 SQSSSVTTHMRTH 194
           ++S     H + H
Sbjct: 73  ARSDERKRHTKIH 85



 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 120 IPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           I  + ++R   L TH+RTH+GEKP+ C+ C + F+++     H + H  +K
Sbjct: 39  ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
 pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
          Length = 87

 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 62/87 (71%), Gaps = 2/87 (2%)

Query: 169 EKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+P+ CP+  CDRRFS+S  +T H+R H+G++P++CR+C + FS S  LT H+R H+GEK
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60

Query: 227 PYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           P+ C +C  +F++S    RH ++H  Q
Sbjct: 61  PFACDICGRKFARSDERKRHTKIHLRQ 87



 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 2/84 (2%)

Query: 141 EKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           E+PY C  E C++ FS++  LT H+R H+G+KPF+C IC R FS+S  +TTH+RTH+GE+
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60

Query: 199 PYRCRLCKKAFSDSSTLTKHLRIH 222
           P+ C +C + F+ S    +H +IH
Sbjct: 61  PFACDICGRKFARSDERKRHTKIH 84



 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 50/73 (68%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
            + ++R   L  H+R H+G+KP++C  C ++FS++ +LT H+RTH+GEKPF C IC R+F
Sbjct: 12  DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 71

Query: 182 SQSSSVTTHMRTH 194
           ++S     H + H
Sbjct: 72  ARSDERKRHTKIH 84


>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
           Zif268- Dna Complex At 2.1 Angstroms
          Length = 87

 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 61/84 (72%), Gaps = 2/84 (2%)

Query: 169 EKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+P+ CP+  CDRRFS+S  +T H+R H+G++P++CR+C + FS S  LT H+R H+GEK
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 227 PYQCKLCLLRFSQSGNLNRHMRVH 250
           P+ C +C  +F++S    RH ++H
Sbjct: 62  PFACDICGRKFARSDERKRHTKIH 85



 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 2/84 (2%)

Query: 141 EKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           E+PY C  E C++ FS++  LT H+R H+G+KPF+C IC R FS+S  +TTH+RTH+GE+
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 199 PYRCRLCKKAFSDSSTLTKHLRIH 222
           P+ C +C + F+ S    +H +IH
Sbjct: 62  PFACDICGRKFARSDERKRHTKIH 85



 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 50/73 (68%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
            + ++R   L  H+R H+G+KP++C  C ++FS++ +LT H+RTH+GEKPF C IC R+F
Sbjct: 13  DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72

Query: 182 SQSSSVTTHMRTH 194
           ++S     H + H
Sbjct: 73  ARSDERKRHTKIH 85



 Score = 32.7 bits (73), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 225 EKPYQCKL--CLLRFSQSGNLNRHMRVHGSQ 253
           E+PY C +  C  RFS+S  L RH+R+H  Q
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQ 32


>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
 pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
          Length = 90

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 63/89 (70%), Gaps = 2/89 (2%)

Query: 169 EKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+P+ CP+  CDRRFSQ +++ TH+R H+G++P++CR+C + FS  + L +H+R H+GEK
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61

Query: 227 PYQCKLCLLRFSQSGNLNRHMRVHGSQYN 255
           P+ C +C  +F+     +RH ++H  Q +
Sbjct: 62  PFACDICGRKFATLHTRDRHTKIHLRQKD 90



 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 59/88 (67%), Gaps = 2/88 (2%)

Query: 141 EKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           E+PY C  E C++ FSQ  NL  H+R H+G+KPF+C IC R FSQ + +  H+RTH+GE+
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61

Query: 199 PYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           P+ C +C + F+   T  +H +IH  +K
Sbjct: 62  PFACDICGRKFATLHTRDRHTKIHLRQK 89



 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 48/72 (66%)

Query: 123 KTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFS 182
           + +++ + L TH+R H+G+KP++C  C ++FSQ   L  H+RTH+GEKPF C IC R+F+
Sbjct: 14  RRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFA 73

Query: 183 QSSSVTTHMRTH 194
              +   H + H
Sbjct: 74  TLHTRDRHTKIH 85



 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 120 IPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           I  + +++ + L  H+RTH+GEKP+ C+ C + F+       H + H  +K
Sbjct: 39  ICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
           Zinc-Binding Domain Of The Zinc Finger Protein 64,
           Isoforms 1 And 2
          Length = 96

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 56/83 (67%)

Query: 143 PYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
           P++CE C K FS+   L  H+R H+G KP++C  CD   + SSS+  H+R HS ERP++C
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67

Query: 203 RLCKKAFSDSSTLTKHLRIHSGE 225
           ++C  A  +SS LT HLR H+G+
Sbjct: 68  QICPYASRNSSQLTVHLRSHTGD 90



 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 53/80 (66%)

Query: 171 PFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
           P +C +C + FS+   + THMR H+G +PY+C+ C  A +DSS+L KHLRIHS E+P++C
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67

Query: 231 KLCLLRFSQSGNLNRHMRVH 250
           ++C      S  L  H+R H
Sbjct: 68  QICPYASRNSSQLTVHLRSH 87



 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 54/78 (69%)

Query: 120 IPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDR 179
           + GK ++R   LKTH+R H+G KPY+C+ C+ + + +++L  H+R HS E+PF+C IC  
Sbjct: 13  VCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPY 72

Query: 180 RFSQSSSVTTHMRTHSGE 197
               SS +T H+R+H+G+
Sbjct: 73  ASRNSSQLTVHLRSHTGD 90



 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query: 199 PYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           P++C +C K FS    L  H+R H+G KPY+CK C    + S +LN+H+R+H  +
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62


>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
          Length = 155

 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 64/98 (65%), Gaps = 7/98 (7%)

Query: 131 LKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSS 186
           L  H+R H+GEKP++C  E C KS+S+  NL  H+R+H+GEKP+ C    C + FS +S 
Sbjct: 55  LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASD 114

Query: 187 VTTHM-RTHSGERPYRCRL--CKKAFSDSSTLTKHLRI 221
              H  RTHS E+PY C+L  C K ++D S+L KH++ 
Sbjct: 115 RAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152



 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 66/107 (61%), Gaps = 8/107 (7%)

Query: 153 FSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRL--CKKA 208
           F     L  H+R H+GEKP +C    C + +S+  ++ TH+R+H+GE+PY C    C KA
Sbjct: 49  FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108

Query: 209 FSDSSTLTKHL-RIHSGEKPYQCKL--CLLRFSQSGNLNRHMR-VHG 251
           FS++S   KH  R HS EKPY CKL  C  R++   +L +H++ VHG
Sbjct: 109 FSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155



 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 5/76 (6%)

Query: 123 KTYARPSTLKTHLRTHSGEKPYRCED--CNKSFSQAANLTAHV-RTHSGEKPFRC--PIC 177
           K+Y+R   LKTHLR+H+GEKPY CE   C+K+FS A++   H  RTHS EKP+ C  P C
Sbjct: 77  KSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGC 136

Query: 178 DRRFSQSSSVTTHMRT 193
            +R++  SS+  H++T
Sbjct: 137 TKRYTDPSSLRKHVKT 152



 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 13/126 (10%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRT---HSGEKPFRCPI--CDRR---FSQSSSVTTHMR 192
           E   R + C++ F     L  H+ +   H   K F C    C R    F     +  HMR
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60

Query: 193 THSGERPYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQCKL--CLLRFSQSGNLNRHM- 247
            H+GE+P++C    C+K++S    L  HLR H+GEKPY C+   C   FS + +  +H  
Sbjct: 61  RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120

Query: 248 RVHGSQ 253
           R H ++
Sbjct: 121 RTHSNE 126


>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
           To Its Target Dna
          Length = 90

 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE--DCNKSFSQAANLTAHVRTHSGEKPFRCPICDR 179
           GKTY + S LK HLRTH+GEKPY C+   C   F+++  LT H R H+G +PF+C  CDR
Sbjct: 15  GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDR 74

Query: 180 RFSQSSSVTTHMRTH 194
            FS+S  +  HM+ H
Sbjct: 75  AFSRSDHLALHMKRH 89



 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 2/76 (2%)

Query: 149 CNKSFSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCK 206
           C K+++++++L AH+RTH+GEKP+ C    C  +F++S  +T H R H+G RP++C+ C 
Sbjct: 14  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73

Query: 207 KAFSDSSTLTKHLRIH 222
           +AFS S  L  H++ H
Sbjct: 74  RAFSRSDHLALHMKRH 89



 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 2/76 (2%)

Query: 177 CDRRFSQSSSVTTHMRTHSGERPYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQCKLCL 234
           C + +++SS +  H+RTH+GE+PY C    C   F+ S  LT+H R H+G +P+QC+ C 
Sbjct: 14  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73

Query: 235 LRFSQSGNLNRHMRVH 250
             FS+S +L  HM+ H
Sbjct: 74  RAFSRSDHLALHMKRH 89


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
           Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 4/86 (4%)

Query: 113 RLILIQFIPG--KTYARPSTLKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTHSG 168
           R I     PG  K Y + S LK HLRTH+GEKPY+C  E C+  F+++  LT H R H+G
Sbjct: 13  RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTH 194
            KPF+C +C+R FS+S  +  HM+ H
Sbjct: 73  AKPFQCGVCNRSFSRSDHLALHMKRH 98



 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 2/76 (2%)

Query: 149 CNKSFSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCK 206
           C K ++++++L AH+RTH+GEKP++C    CD RF++S  +T H R H+G +P++C +C 
Sbjct: 23  CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82

Query: 207 KAFSDSSTLTKHLRIH 222
           ++FS S  L  H++ H
Sbjct: 83  RSFSRSDHLALHMKRH 98



 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 2/78 (2%)

Query: 175 PICDRRFSQSSSVTTHMRTHSGERPYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQCKL 232
           P C + +++SS +  H+RTH+GE+PY+C    C   F+ S  LT+H R H+G KP+QC +
Sbjct: 21  PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80

Query: 233 CLLRFSQSGNLNRHMRVH 250
           C   FS+S +L  HM+ H
Sbjct: 81  CNRSFSRSDHLALHMKRH 98


>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
           To Its Target Dna
          Length = 89

 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE--DCNKSFSQAANLTAHVRTHSGEKPFRCPICDR 179
           GKTY + S LK HLRTH+GEKPY C+   C   F+++  LT H R H+G +PF+C  CDR
Sbjct: 14  GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDR 73

Query: 180 RFSQSSSVTTHMRTH 194
            FS+S  +  HM+ H
Sbjct: 74  AFSRSDHLALHMKRH 88



 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 2/76 (2%)

Query: 149 CNKSFSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCK 206
           C K+++++++L AH+RTH+GEKP+ C    C  +F++S  +T H R H+G RP++C+ C 
Sbjct: 13  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72

Query: 207 KAFSDSSTLTKHLRIH 222
           +AFS S  L  H++ H
Sbjct: 73  RAFSRSDHLALHMKRH 88



 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 2/76 (2%)

Query: 177 CDRRFSQSSSVTTHMRTHSGERPYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQCKLCL 234
           C + +++SS +  H+RTH+GE+PY C    C   F+ S  LT+H R H+G +P+QC+ C 
Sbjct: 13  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72

Query: 235 LRFSQSGNLNRHMRVH 250
             FS+S +L  HM+ H
Sbjct: 73  RAFSRSDHLALHMKRH 88


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 51/77 (66%)

Query: 120 IPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDR 179
           I GK++ R STL THL  HS  +PY C+ C K F Q +++  H   H+GEKP +C +C +
Sbjct: 6   ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 65

Query: 180 RFSQSSSVTTHMRTHSG 196
            FSQSS++ TH R H+G
Sbjct: 66  AFSQSSNLITHSRKHTG 82



 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 51/79 (64%)

Query: 172 FRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCK 231
           F C IC + F +SS+++TH+  HS  RPY C+ C K F   S + KH  IH+GEKP++C+
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61

Query: 232 LCLLRFSQSGNLNRHMRVH 250
           +C   FSQS NL  H R H
Sbjct: 62  VCGKAFSQSSNLITHSRKH 80



 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 52/81 (64%)

Query: 144 YRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCR 203
           + C+ C KSF +++ L+ H+  HS  +P+ C  C +RF Q S +  H   H+GE+P++C+
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61

Query: 204 LCKKAFSDSSTLTKHLRIHSG 224
           +C KAFS SS L  H R H+G
Sbjct: 62  VCGKAFSQSSNLITHSRKHTG 82


>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
           To The Adeno-Associated Virus P5 Initiator Element
          Length = 124

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 5/111 (4%)

Query: 123 KTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPI--CDRR 180
           K +   S ++ HL TH G + + C +C K+F +++ L  H   H+GEKPF+C    C +R
Sbjct: 15  KMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKR 73

Query: 181 FSQSSSVTTHMRTHSGERPYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQ 229
           FS   ++ TH+R H+G+RPY C    C K F+ S+ L  H+  H+  K  Q
Sbjct: 74  FSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124



 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 52/78 (66%), Gaps = 4/78 (5%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPI--C 177
           GK +   S LK H   H+GEKP++C  E C K FS   NL  HVR H+G++P+ CP   C
Sbjct: 41  GKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGC 100

Query: 178 DRRFSQSSSVTTHMRTHS 195
           +++F+QS+++ +H+ TH+
Sbjct: 101 NKKFAQSTNLKSHILTHA 118



 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 149 CNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRL--CK 206
           C K F   + +  H+ TH G +   C  C + F +SS +  H   H+GE+P++C    C 
Sbjct: 13  CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71

Query: 207 KAFSDSSTLTKHLRIHSGEKPYQCKL--CLLRFSQSGNLNRHMRVHGSQYN 255
           K FS    L  H+RIH+G++PY C    C  +F+QS NL  H+  H    N
Sbjct: 72  KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122


>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
 pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
          Length = 190

 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 72/140 (51%), Gaps = 10/140 (7%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPI--C 177
           G  Y +   L+ HL  H+GEKP+ C  E C K F+   +LT H  TH+GEK F C    C
Sbjct: 21  GAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGC 80

Query: 178 DRRFSQSSSVTTHM-RTHSGER-PYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQC--K 231
           D RF+  +++  H  R H+ +   Y C    C KAF   + L  H   H+ + PY+C  +
Sbjct: 81  DLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHE 140

Query: 232 LCLLRFSQSGNLNRHMRVHG 251
            C  RFS    L RH +VH 
Sbjct: 141 GCDKRFSLPSRLKRHEKVHA 160



 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 147 EDCNKSFSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSSVTTHMRTHSG 196
           E+C K+F +   L  H  +H+ + P+ CP   CD+RFS  S +  H + H+G
Sbjct: 110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161


>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
           Human Zinc Finger Protein Zic 3
          Length = 155

 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 4/81 (4%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE--DCNKSFSQAANLTAHVRTHSGEKPFRCPI--C 177
           GK++     L  H+R H+GEKP+ C    C K F+++ NL  H RTH+GEKPF+C    C
Sbjct: 69  GKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGC 128

Query: 178 DRRFSQSSSVTTHMRTHSGER 198
           DRRF+ SS    HM  H+ ++
Sbjct: 129 DRRFANSSDRKKHMHVHTSDK 149



 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 7/87 (8%)

Query: 147 EDC---NKSFSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYR 201
           E+C    KSF     L  H+R H+GEKPF CP   C + F++S ++  H RTH+GE+P++
Sbjct: 63  EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122

Query: 202 CRL--CKKAFSDSSTLTKHLRIHSGEK 226
           C    C + F++SS   KH+ +H+ +K
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDK 149



 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 13/118 (11%)

Query: 149 CNKSFSQAANLTAHVRTHSGEKPFR---------CPICDRRFSQSSSVTTHMRTHSGERP 199
           C+++FS    L  HV       P +         CP   + F     +  H+R H+GE+P
Sbjct: 31  CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90

Query: 200 YRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQCKL--CLLRFSQSGNLNRHMRVHGSQ 253
           + C    C K F+ S  L  H R H+GEKP++C+   C  RF+ S +  +HM VH S 
Sbjct: 91  FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148


>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
           Protein Odd-Skipped-Related 2 Splicing Isoform 2
          Length = 106

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 47/82 (57%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPY 228
           +K F C  C R F++S ++  H RTH+ ERPY C +C KAF     L  H  IHS EKP+
Sbjct: 15  KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74

Query: 229 QCKLCLLRFSQSGNLNRHMRVH 250
           +C+ C   F QS  L  H  +H
Sbjct: 75  KCQECGKGFCQSRTLAVHKTLH 96



 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPY 200
           +K + C+ C + F+++ NL  H RTH+ E+P+ C IC + F +   +  H   HS E+P+
Sbjct: 15  KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74

Query: 201 RCRLCKKAFSDSSTLTKHLRIH 222
           +C+ C K F  S TL  H  +H
Sbjct: 75  KCQECGKGFCQSRTLAVHKTLH 96



 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%)

Query: 108 LNSGIRLILIQFIPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHS 167
           L S  +   I    G+ + +   L  H RTH+ E+PY C+ C+K+F +  +L  H   HS
Sbjct: 10  LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69

Query: 168 GEKPFRCPICDRRFSQSSSVTTHMRTH 194
            EKPF+C  C + F QS ++  H   H
Sbjct: 70  KEKPFKCQECGKGFCQSRTLAVHKTLH 96



 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 30/57 (52%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           ++ + C+ C + F+ S  L  H R H+ E+PY C +C   F +  +L  H  +H  +
Sbjct: 15  KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
           Zinc Finger Protein 278
          Length = 95

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 3/89 (3%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGE- 197
           SG     CE C K F    +L  H  +HSGEKP+ CP+C  RF +   ++ H+R+H G  
Sbjct: 3   SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62

Query: 198 -RPYRCRLCKKAFSDSSTLTKHLR-IHSG 224
            +PY C+ C K FS    L  H++ +HSG
Sbjct: 63  GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91



 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGE- 225
           SG     C IC + F     +  H  +HSGE+PY C +C   F     ++ H+R H G  
Sbjct: 3   SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62

Query: 226 -KPYQCKLCLLRFSQSGNLNRHMR 248
            KPY C+ C   FS+  +LN H++
Sbjct: 63  GKPYICQSCGKGFSRPDHLNGHIK 86



 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 120 IPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGE--KPFRCPIC 177
           I GK +     L  H  +HSGEKPY C  C   F +   ++ HVR+H G   KP+ C  C
Sbjct: 12  ICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSC 71

Query: 178 DRRFSQSSSVTTHMR-THSG 196
            + FS+   +  H++  HSG
Sbjct: 72  GKGFSRPDHLNGHIKQVHSG 91



 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           SG     C +C K F D   L +H   HSGEKPY C +C LRF +   ++ H+R H
Sbjct: 3   SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 123 KTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVR---THSGEKPFRCPICDR 179
           K +     LK H R H+GEKP+ C  C K + +  NL  H      +  E+ F C +C  
Sbjct: 15  KKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQE 74

Query: 180 RFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHL-RIHSG 224
            F +   +  HM +H+GE PY+C  C + F     L  H+ ++HSG
Sbjct: 75  TFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120



 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 3/112 (2%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMR---THS 195
           SG     C  C+K F     L  H R H+GEKPF CP C + + +  ++  H      + 
Sbjct: 3   SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62

Query: 196 GERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHM 247
            E+ + C +C++ F     L  H+  H+GE PY+C  C  +F Q  +L  HM
Sbjct: 63  SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114


>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
           Northeast Structural Genomics Consortium
          Length = 74

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           +KPY+C+ C  SF    NL +H   H+GEKP+RC IC  +F++ +++ TH R HSGE+P
Sbjct: 15  DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73



 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           +KP++C  C   F    ++ +H   H+GE+PYRC +C   F+  + L  H RIHSGEKP
Sbjct: 15  DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73



 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           ++PY+C  C+ +F     L  H  +H+GEKPY+C +C  +F++  NL  H R+H  +
Sbjct: 15  DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71



 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 27/42 (64%)

Query: 130 TLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
            L +H   H+GEKPYRC  C   F++ ANL  H R HSGEKP
Sbjct: 32  NLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73



 Score = 34.3 bits (77), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 15/24 (62%), Positives = 17/24 (70%)

Query: 120 IPGKTYARPSTLKTHLRTHSGEKP 143
           I G  + RP+ LKTH R HSGEKP
Sbjct: 50  ICGAQFNRPANLKTHTRIHSGEKP 73


>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
          Length = 73

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 42/56 (75%), Gaps = 2/56 (3%)

Query: 170 KPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHS 223
           +P+ CP+  CDRRFS+S  +T H+R H+G++P++CR+C + FS S  LT H+R H+
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73



 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 42/56 (75%), Gaps = 2/56 (3%)

Query: 142 KPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHS 195
           +PY C  E C++ FS++  LT H+R H+G+KPF+C IC R FS+S  +TTH+RTH+
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73



 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 2/55 (3%)

Query: 198 RPYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           RPY C +  C + FS S  LT+H+RIH+G+KP+QC++C+  FS+S +L  H+R H
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72



 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 8/69 (11%)

Query: 107 PLNSGIRLILIQFIP--------GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAAN 158
           P+N+ +  ++ +  P         + ++R   L  H+R H+G+KP++C  C ++FS++ +
Sbjct: 5   PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64

Query: 159 LTAHVRTHS 167
           LT H+RTH+
Sbjct: 65  LTTHIRTHT 73



 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 226 KPYQCKL--CLLRFSQSGNLNRHMRVHGSQ 253
           +PY C +  C  RFS+S  L RH+R+H  Q
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQ 47


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
           Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           SG+K + C  C + F+  S    HM  H G RPY C +C K F     L  H++IH+G K
Sbjct: 6   SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64

Query: 227 PYQCKLCLLRFSQSGNLNRHM 247
           PY+C +C  RF    + +RH+
Sbjct: 65  PYECNICAKRFMWRDSFHRHV 85



 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           SG+K Y C+ C KSF+  +    H+  H G +P+ C +C ++F     +  HM+ H+G +
Sbjct: 6   SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64

Query: 199 PYRCRLCKKAFSDSSTLTKHL 219
           PY C +C K F    +  +H+
Sbjct: 65  PYECNICAKRFMWRDSFHRHV 85



 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 105 GRPLNSGIRLILIQFIPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVR 164
           G   +SG +L   Q   GK++   S    H+  H G +PY C  C K F    +L  H++
Sbjct: 1   GSSGSSGDKLYPCQC--GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58

Query: 165 THSGEKPFRCPICDRRFSQSSSVTTHM 191
            H+G KP+ C IC +RF    S   H+
Sbjct: 59  IHTGIKPYECNICAKRFMWRDSFHRHV 85



 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           SG++ Y C+ C K+F+  S   +H+ +H G +PY C +C  +F    +L  HM++H
Sbjct: 6   SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60


>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Zinc Finger Protein 24
          Length = 72

 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 37/56 (66%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGS 252
           E+PY C  C KAFS SS L +H R+H+GEKPY+C  C   FSQ+  L  H R+H S
Sbjct: 12  EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67



 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHS 223
           EKP+ C  C + FS+SS +  H R H+GE+PY+C  C KAFS +S L  H RIH+
Sbjct: 12  EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66



 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHS 195
           EKPY C +C K+FS+++ L  H R H+GEKP++C  C + FSQ+S +  H R H+
Sbjct: 12  EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66



 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 31/46 (67%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHS 167
           GK ++R S L  H R H+GEKPY+C +C K+FSQ + L  H R H+
Sbjct: 21  GKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66


>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
           Of Zinc Finger Protein 435
          Length = 77

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 40/58 (68%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           + Y+C++C KSFS +++L+ H RTH+GEKP++C  C + F Q S +  H R H+G  P
Sbjct: 17  RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74



 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           + ++C  C + FS SS ++ H RTH+GE+PY+C  C KAF   S L  H R+H+G  P
Sbjct: 17  RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74



 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 35/50 (70%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           GK+++  S L  H RTH+GEKPY+C++C K+F Q ++L  H R H+G  P
Sbjct: 25  GKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 34/53 (64%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           R Y+C  C K+FS SS L+KH R H+GEKPY+C  C   F Q  +L  H RVH
Sbjct: 17  RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69


>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
 pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
          Length = 88

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 36/49 (73%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTH 190
           KP++C  C ++FS++ +LT H+RTH+GEKPF C IC R+F++S     H
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50



 Score = 61.6 bits (148), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 36/53 (67%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIH 222
           KPF+C IC R FS+S  +TTH+RTH+GE+P+ C +C + F+ S    +H  I 
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54



 Score = 60.1 bits (144), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGSQYNML 257
           +P++CR+C + FS S  LT H+R H+GEKP+ C +C  +F++S    RH  +     ++L
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ----HIL 57

Query: 258 PVIYMGVNQVCS 269
           P++   V ++ S
Sbjct: 58  PILEDKVEELLS 69



 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 123 KTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAH 162
           + ++R   L TH+RTH+GEKP+ C+ C + F+++     H
Sbjct: 11  RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50


>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
          Length = 92

 Score = 57.8 bits (138), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPI--C 177
           G  Y +   L+ HL  H+GEKP+ C  E C K F+   +LT H  TH+GEK F C    C
Sbjct: 12  GAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGC 71

Query: 178 DRRFSQSSSVTTH 190
           D RF+  +++  H
Sbjct: 72  DLRFTTKANMKKH 84



 Score = 52.4 bits (124), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 177 CDRRFSQSSSVTTHMRTHSGERPYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQCKL-- 232
           C   ++++  +  H+  H+GE+P+ C+   C+K F+    LT+H   H+GEK + C    
Sbjct: 11  CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70

Query: 233 CLLRFSQSGNLNRHM-RVH 250
           C LRF+   N+ +H  R H
Sbjct: 71  CDLRFTTKANMKKHFNRFH 89



 Score = 52.0 bits (123), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 142 KPYRCE--DCNKSFSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSSVTTHMRTHSGE 197
           K Y C   DC  ++++   L AH+  H+GEKPF C    C++ F+    +T H  TH+GE
Sbjct: 2   KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61

Query: 198 RPYRCRL--CKKAFSDSSTLTKHL-RIHS 223
           + + C    C   F+  + + KH  R H+
Sbjct: 62  KNFTCDSDGCDLRFTTKANMKKHFNRFHN 90



 Score = 35.4 bits (80), Expect = 0.040,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 205 CKKAFSDSSTLTKHLRIHSGEKPYQCKL--CLLRFSQSGNLNRHMRVHGSQYN 255
           C  A++ +  L  HL  H+GEKP+ CK   C   F+   +L RH   H  + N
Sbjct: 11  CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63


>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
           From Human Krueppel-Like Factor 10
          Length = 72

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 10/68 (14%)

Query: 129 STLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSS 186
           S +++H+ +H G        C K++ ++++L AH RTH+GEKPF C    C+RRF++S  
Sbjct: 13  SRIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64

Query: 187 VTTHMRTH 194
           ++ H RTH
Sbjct: 65  LSRHRRTH 72



 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTH 166
           GKTY + S LK H RTH+GEKP+ C  + C + F+++  L+ H RTH
Sbjct: 26  GKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72



 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 10/70 (14%)

Query: 183 QSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC--KLCLLRFSQS 240
            SS + +H+ +H G        C K +  SS L  H R H+GEKP+ C  K C  RF++S
Sbjct: 11  DSSRIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62

Query: 241 GNLNRHMRVH 250
             L+RH R H
Sbjct: 63  DELSRHRRTH 72



 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 175 PICDRRFSQSSSVTTHMRTHSGERPYRC--RLCKKAFSDSSTLTKHLRIH 222
           P C + + +SS +  H RTH+GE+P+ C  + C++ F+ S  L++H R H
Sbjct: 23  PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72


>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
           Domain In Complex With Kaiso Binding Site Dna
 pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
           In Complex With Kaiso Binding Site Dna
 pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
           In Complex With Methylated Cpg Site Dna
          Length = 133

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
            G   Y C  C +S+    +L  H   HS EK + C  C++ F  +   T H   H+GER
Sbjct: 18  DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77

Query: 199 PYRCRLCKKAFSDSSTLTKHLR-IHSGE 225
            Y+C  C K+F +   ++ H++ +HS +
Sbjct: 78  RYQCLACGKSFINYQFMSSHIKSVHSQD 105



 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
            G   + C +C R +   +S+  H   HS E+ Y CR C+K F  +   TKH   H+GE+
Sbjct: 18  DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77

Query: 227 PYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
            YQC  C   F     ++ H++   SQ
Sbjct: 78  RYQCLACGKSFINYQFMSSHIKSVHSQ 104



 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%)

Query: 113 RLILIQFIPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPF 172
           R+  I  +  ++Y   ++L+ H   HS EK Y C  C K F  A   T H   H+GE+ +
Sbjct: 20  RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY 79

Query: 173 RCPICDRRFSQSSSVTTHMRTHSGERP 199
           +C  C + F     +++H+++   + P
Sbjct: 80  QCLACGKSFINYQFMSSHIKSVHSQDP 106


>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
           (781- 813) From Zinc Finger Protein 473
          Length = 46

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 25/31 (80%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPYRC +C K+F+Q ANLT H R H+GEKP
Sbjct: 10  EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40



 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PYRC  C KAF+  + LT+H RIH+GEKP
Sbjct: 10  EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40



 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+RC  C + F+Q +++T H R H+GE+P
Sbjct: 10  EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40



 Score = 34.7 bits (78), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C  C   F+Q  NL +H R+H
Sbjct: 10  EKPYRCGECGKAFAQKANLTQHQRIH 35



 Score = 27.7 bits (60), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 122 GKTYARPSTLKTHLRTHSGEKP 143
           GK +A+ + L  H R H+GEKP
Sbjct: 19  GKAFAQKANLTQHQRIHTGEKP 40


>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
          Length = 60

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           ERP+ C  C K + D+S L++H R H G +P  C  C   F     +NRH++VH ++
Sbjct: 2   ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58



 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
           E+PF C  C + +  +S ++ H R H G RP  C  C K F D S + +HL++H  +
Sbjct: 2   ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58



 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
           E+P+ C  C K++  A+ L+ H R H G +P  CP C + F   S V  H++ H  +
Sbjct: 2   ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58



 Score = 38.1 bits (87), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGE 169
           GKTY   S L  H R H G +P  C +C K F   + +  H++ H  +
Sbjct: 11  GKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
           Nmr, 25 Structures
          Length = 60

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 172 FRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHL-RIHSG 224
           F C +C R F++   +  H R+H+ E+PY C LC +AF+    L +H  +IHSG
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56



 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 144 YRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTH-MRTHSG 196
           + CE C ++F++  +L  H R+H+ EKP+ C +C+R F++   +  H  + HSG
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56



 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 200 YRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRH 246
           + C +C +AF+    L +H R H+ EKPY C LC   F++   L RH
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49



 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 123 KTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHV-RTHSG 168
           + +AR   LK H R+H+ EKPY C  CN++F++   L  H  + HSG
Sbjct: 10  RAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56


>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
           Transcriptional Repressor Ctcf Protein
          Length = 77

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 136 RTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK--PFRCPICDRRFSQSSSVTTHMR 192
           RTHSGEKPY C  C+  F+Q+  +  H+     E    F CP CD   ++ S +  H+R
Sbjct: 8   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66



 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 164 RTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER--PYRCRLCKKAFSDSSTLTKHLR 220
           RTHSGEKP+ C IC  RF+QS ++  H+     E    + C  C    +  S L  HLR
Sbjct: 8   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66



 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 220 RIHSGEKPYQCKLCLLRFSQSGNLNRHM 247
           R HSGEKPY+C +C  RF+QSG +  H+
Sbjct: 8   RTHSGEKPYECYICHARFTQSGTMKMHI 35


>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           556- 588) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 26/31 (83%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C +C+KAFS  ++LT+H R+HSGEKP
Sbjct: 10  EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40



 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 23/31 (74%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY C+ C K+FS  A+LT H R HSGEKP
Sbjct: 10  EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40



 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C +C + FS  +S+T H R HSGE+P
Sbjct: 10  EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40



 Score = 34.3 bits (77), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           EKPY+C +C   FS   +L +H RVH  +
Sbjct: 10  EKPYECDVCRKAFSHHASLTQHQRVHSGE 38


>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           491- 523) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 24/31 (77%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           ERPY C +C KAF+D S L KH +IH+GEKP
Sbjct: 10  ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40



 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           E+PY C  C K+F+  +NL  H + H+GEKP
Sbjct: 10  ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40



 Score = 35.0 bits (79), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           E+P+ C +C + F+  S++  H + H+GE+P
Sbjct: 10  ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40



 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           E+PY C +C   F+   NL +H ++H
Sbjct: 10  ERPYICTVCGKAFTDRSNLIKHQKIH 35


>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           887- 919) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 25/31 (80%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY C +C K+FSQ + L+AH RTH+GEKP
Sbjct: 10  EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40



 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C  C K FS  S L+ H R H+GEKP
Sbjct: 10  EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40



 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C  C + FSQ S ++ H RTH+GE+P
Sbjct: 10  EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40



 Score = 31.2 bits (69), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 13/22 (59%), Positives = 17/22 (77%)

Query: 122 GKTYARPSTLKTHLRTHSGEKP 143
           GKT+++ S L  H RTH+GEKP
Sbjct: 19  GKTFSQKSILSAHQRTHTGEKP 40



 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY C  C   FSQ   L+ H R H
Sbjct: 10  EKPYGCNECGKTFSQKSILSAHQRTH 35


>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           760- 792) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C KAFS +S L +H RIH+GEKP
Sbjct: 10  EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40



 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+C +C K+FSQ + L  H R H+GEKP
Sbjct: 10  EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40



 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C + FSQ+S +  H R H+GE+P
Sbjct: 10  EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C  C   FSQ+  L RH R+H
Sbjct: 10  EKPYKCNECGKAFSQTSKLARHQRIH 35


>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
 pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
           Form
 pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
          Length = 57

 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 146 CEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTH 194
           C  C K F     L  H+RTH+GEKP++C  C+   +Q +S+  H+  H
Sbjct: 7   CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55



 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 174 CPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIH 222
           C  C + F  +  +  H+RTH+GE+PY+C  C+ A +  ++L  HL  H
Sbjct: 7   CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55



 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%)

Query: 202 CRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           C  C K F  +  L  HLR H+GEKPY+C+ C    +Q  +L  H+  H
Sbjct: 7   CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55



 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTH 166
           GK +     L  HLRTH+GEKPY+CE C  + +Q  +L  H+  H
Sbjct: 11  GKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55


>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
           Zinc Finger Protein 32
          Length = 41

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           SGEKPY+C++C KSFSQ  +L  H R H+G  P
Sbjct: 6   SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38



 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           SGE+PY+C+ C K+FS   +L  H R+H+G  P
Sbjct: 6   SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38



 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/28 (64%), Positives = 20/28 (71%)

Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           SGEKPYQCK C   FSQ G+L  H R+H
Sbjct: 6   SGEKPYQCKECGKSFSQRGSLAVHERLH 33



 Score = 38.9 bits (89), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           SGEKP++C  C + FSQ  S+  H R H+G  P
Sbjct: 6   SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38


>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
           Zinc Finger Protein 32
          Length = 42

 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPYRC+ C K+FSQ  +L  H+R H+G  P
Sbjct: 9   EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39



 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PYRC  C KAFS   +L  H+R+H+G  P
Sbjct: 9   EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39



 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+RC  C + FSQ  S+  H+R H+G  P
Sbjct: 9   EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39



 Score = 34.7 bits (78), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 15/26 (57%), Positives = 18/26 (69%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C  C   FSQ G+L  H+RVH
Sbjct: 9   EKPYRCDQCGKAFSQKGSLIVHIRVH 34


>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
           Zinc Finger From The Human Enhancer Binding Protein
           Mbp-1
          Length = 57

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 127 RPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           +PS LK H+RTH+  +PY C  CN SF    NLT H+++ +  K
Sbjct: 13  KPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56



 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 24/49 (48%)

Query: 200 YRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMR 248
           Y C  C       S L KH+R H+  +PY C  C   F   GNL +HM+
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50



 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 144 YRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRT 193
           Y CE+C     + + L  H+RTH+  +P+ C  C+  F    ++T HM++
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51



 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 172 FRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLR 220
           + C  C  R  + S +  H+RTH+  RPY C  C  +F     LTKH++
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50


>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           775- 807) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY C +C K+FS  + L  H+RTHSGEKP
Sbjct: 10  EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40



 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C  C KAFS  S L  H+R HSGEKP
Sbjct: 10  EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40



 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C  C + FS  S +  HMRTHSGE+P
Sbjct: 10  EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40



 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 122 GKTYARPSTLKTHLRTHSGEKP 143
           GK ++  S L  H+RTHSGEKP
Sbjct: 19  GKAFSSKSYLIIHMRTHSGEKP 40



 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 14/29 (48%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           EKPY C  C   FS    L  HMR H  +
Sbjct: 10  EKPYGCSECGKAFSSKSYLIIHMRTHSGE 38


>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           631- 663) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PYRC  C KAF+D S L  H +IH+GEKP
Sbjct: 10  EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40



 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPYRC +C K+F+  +NL  H + H+GEKP
Sbjct: 10  EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40



 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+RC  C + F+  S++ TH + H+GE+P
Sbjct: 10  EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40



 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C  C   F+   NL  H ++H
Sbjct: 10  EKPYRCAECGKAFTDRSNLFTHQKIH 35


>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           668- 700) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY C++C K+FSQ  +L  H R H+GEKP
Sbjct: 10  EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40



 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C+ C KAFS ++ L +H R+H+GEKP
Sbjct: 10  EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40



 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C  C + FSQ++ +  H R H+GE+P
Sbjct: 10  EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 15/26 (57%), Positives = 19/26 (73%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+CK C   FSQ+ +L +H RVH
Sbjct: 10  EKPYECKECGKAFSQTTHLIQHQRVH 35


>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           396- 428) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C K F+ +S LT H RIH+GEKP
Sbjct: 10  EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40



 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+C +C K F+Q ++LT H R H+GEKP
Sbjct: 10  EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40



 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C + F+Q+S +T H R H+GE+P
Sbjct: 10  EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C  C   F+Q+ +L  H R+H
Sbjct: 10  EKPYKCNECGKVFTQNSHLTNHWRIH 35


>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           640- 672) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 25/31 (80%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY C+ C+K+F+Q A+L  H +TH+GEKP
Sbjct: 10  EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40



 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C++C KAF+  + L +H + H+GEKP
Sbjct: 10  EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40



 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C +C + F+Q + +  H +TH+GE+P
Sbjct: 10  EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40



 Score = 34.7 bits (78), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+CK+C   F+Q  +L +H + H
Sbjct: 10  EKPYECKVCSKAFTQKAHLAQHQKTH 35


>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           607- 639) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKP+ C +C K+F+  +NL  H RTH+GEKP
Sbjct: 10  EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40



 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+P+ C  C+KAF+  S L  H R H+GEKP
Sbjct: 10  EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40



 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKPF C  C + F+  S++  H RTH+GE+P
Sbjct: 10  EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40



 Score = 28.1 bits (61), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKP++C  C   F+   NL  H R H
Sbjct: 10  EKPFECSECQKAFNTKSNLIVHQRTH 35


>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           563- 595) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKP++CE+C K F+Q + L +H R H+GEKP
Sbjct: 10  EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40



 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 24/31 (77%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKPF+C  C +RF+Q+S + +H R H+GE+P
Sbjct: 10  EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40



 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+P++C  C K F+ +S L  H R+H+GEKP
Sbjct: 10  EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40



 Score = 34.3 bits (77), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 19/26 (73%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKP++C+ C  RF+Q+  L+ H RVH
Sbjct: 10  EKPFKCEECGKRFTQNSQLHSHQRVH 35


>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           584- 616) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 25/31 (80%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKP++C++C K+F Q  +L +H+R H+GEKP
Sbjct: 10  EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40



 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+P++C+ C KAF  +  L  HLRIH+GEKP
Sbjct: 10  EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40



 Score = 38.9 bits (89), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKPF+C  C + F Q+  + +H+R H+GE+P
Sbjct: 10  EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40



 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKP++CK C   F Q+ +L  H+R+H
Sbjct: 10  EKPFKCKECGKAFRQNIHLASHLRIH 35


>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           528- 560) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+C+ C+KSF   ++LT H R H+GEKP
Sbjct: 10  EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40



 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C +C K+F   S+LT H RIH+GEKP
Sbjct: 10  EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40



 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C +C + F   SS+T H R H+GE+P
Sbjct: 10  EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40



 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C +C   F    +L  H R+H
Sbjct: 10  EKPYKCDVCHKSFRYGSSLTVHQRIH 35


>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           696- 728) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 25/31 (80%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C KAF D+S+ T+H R+H+G++P
Sbjct: 10  EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40



 Score = 38.5 bits (88), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+C +C K+F   ++ T H R H+G++P
Sbjct: 10  EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40



 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C + F  +SS T H R H+G+RP
Sbjct: 10  EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40



 Score = 27.7 bits (60), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           EKPY+C  C   F  + +  +H R+H  Q
Sbjct: 10  EKPYKCMECGKAFGDNSSCTQHQRLHTGQ 38


>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           479- 511) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 25/31 (80%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKP++CE+C K F+Q ++L +H R H+GEKP
Sbjct: 10  EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40



 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 24/31 (77%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKPF+C  C +RF+Q+S + +H R H+GE+P
Sbjct: 10  EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40



 Score = 38.9 bits (89), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+P++C  C K F+ +S L  H R+H+GEKP
Sbjct: 10  EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40



 Score = 35.8 bits (81), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 20/26 (76%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKP+QC+ C  RF+Q+ +L+ H RVH
Sbjct: 10  EKPFQCEECGKRFTQNSHLHSHQRVH 35


>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           +PY+C  C KAFS +S L +H R+H+GEKP
Sbjct: 11  KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40



 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           KPY+C +C K+FSQ + L  H R H+GEKP
Sbjct: 11  KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           KP++C  C + FSQ+S +  H R H+GE+P
Sbjct: 11  KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 16/25 (64%)

Query: 226 KPYQCKLCLLRFSQSGNLNRHMRVH 250
           KPYQC  C   FSQ+  L RH RVH
Sbjct: 11  KPYQCNECGKAFSQTSKLARHQRVH 35


>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           369- 401) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKP++C +C KS++Q  +LT H R H+GEKP
Sbjct: 10  EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40



 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+P++C  C K+++    LT+H R+H+GEKP
Sbjct: 10  EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKPF+C  C + ++Q   +T H R H+GE+P
Sbjct: 10  EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40



 Score = 28.1 bits (61), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKP++C  C   ++Q  +L +H RVH
Sbjct: 10  EKPFKCGECGKSYNQRVHLTQHQRVH 35


>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           367- 399) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY C++C KSF  A+ L  H R HSGEKP
Sbjct: 10  EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40



 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C+ C K+F  +S L KH R+HSGEKP
Sbjct: 10  EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40



 Score = 36.2 bits (82), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C  C + F  +S +  H R HSGE+P
Sbjct: 10  EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40



 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           EKPY CK C   F  +  L +H RVH  +
Sbjct: 10  EKPYNCKECGKSFRWASCLLKHQRVHSGE 38


>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           581- 609) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGE 169
           SGEKPY C DC K+F   + L  H RTH+GE
Sbjct: 6   SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36



 Score = 37.7 bits (86), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
           SGE+PY C  C KAF   S L  H R H+GE
Sbjct: 6   SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36



 Score = 37.0 bits (84), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
           SGEKP+ C  C + F   S +  H RTH+GE
Sbjct: 6   SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36



 Score = 28.9 bits (63), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           SGEKPY+C  C   F     L  H R H
Sbjct: 6   SGEKPYECTDCGKAFGLKSQLIIHQRTH 33


>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           693- 723) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           SG KPY C +C K+F   + L  H+RTH+GEKP
Sbjct: 6   SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38



 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           SG +PY C  C KAF   S L  H+R H+GEKP
Sbjct: 6   SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38



 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           SG KP+ C  C + F   S +  HMRTH+GE+P
Sbjct: 6   SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38



 Score = 28.1 bits (61), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 122 GKTYARPSTLKTHLRTHSGEKP 143
           GK +   S L  H+RTH+GEKP
Sbjct: 17  GKAFRSKSYLIIHMRTHTGEKP 38


>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
           (699- 729) From Zinc Finger Protein 473
          Length = 44

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 23/33 (69%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           SG++P  C  C K F  SS L+KH RIHSGEKP
Sbjct: 6   SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38



 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           SG+KP  C +C K+F Q++ L+ H R HSGEKP
Sbjct: 6   SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38



 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           SG+KP  C  C + F QSS ++ H R HSGE+P
Sbjct: 6   SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38



 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           SG+KP  C  C   F QS  L++H R+H
Sbjct: 6   SGKKPLVCNECGKTFRQSSCLSKHQRIH 33



 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 122 GKTYARPSTLKTHLRTHSGEKP 143
           GKT+ + S L  H R HSGEKP
Sbjct: 17  GKTFRQSSCLSKHQRIHSGEKP 38


>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           544- 576) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           E+P++C +C KSF Q+A+L  H R H+GEKP
Sbjct: 10  ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40



 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           ERP++C  C K+F  S+ L +H RIH+GEKP
Sbjct: 10  ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40



 Score = 34.3 bits (77), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           E+P +C  C + F QS+ +  H R H+GE+P
Sbjct: 10  ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40



 Score = 28.5 bits (62), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           E+P++C  C   F QS +L +H R+H
Sbjct: 10  ERPHKCNECGKSFIQSAHLIQHQRIH 35


>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
           Zinc Finger Protein 473
          Length = 42

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 25/31 (80%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGE 169
           SGEKPY C++C K+F+Q++ L+ H R H+GE
Sbjct: 6   SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36



 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
           SGE+PY C+ C KAF+ SS L+ H R+H+GE
Sbjct: 6   SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36



 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
           SGEKP+ C  C + F+QSS ++ H R H+GE
Sbjct: 6   SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36



 Score = 34.7 bits (78), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           SGEKPY C+ C   F+QS  L+ H RVH
Sbjct: 6   SGEKPYVCQECGKAFTQSSCLSIHRRVH 33


>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
           Zinc Finger Protein 224
          Length = 46

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           EKPY+CEDC K +++  NL  H R H GEK
Sbjct: 10  EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39



 Score = 33.9 bits (76), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+PY+C  C K ++    L  H R+H GEK
Sbjct: 10  EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39



 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           EKP++C  C + +++  ++  H R H GE+
Sbjct: 10  EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39



 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C+ C   +++  NL+ H RVH
Sbjct: 10  EKPYKCEDCGKGYNRRLNLDMHQRVH 35


>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           725- 757) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C  C KAF  S+ L +H RIH+GEKP
Sbjct: 10  EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40



 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY C+ C K+F  +A L  H R H+GEKP
Sbjct: 10  EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40



 Score = 35.8 bits (81), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C  C + F  S+ +  H R H+GE+P
Sbjct: 10  EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40



 Score = 31.2 bits (69), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY C  C   F  S  L RH R+H
Sbjct: 10  EKPYVCDYCGKAFGLSAELVRHQRIH 35


>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           752- 784) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C +C KAFS   +L+ H RIHSG+KP
Sbjct: 10  EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40



 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY C  C K+FS   +L+ H R HSG+KP
Sbjct: 10  EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40



 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C +C + FS   S++ H R HSG++P
Sbjct: 10  EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40



 Score = 31.2 bits (69), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C +C   FS   +L+ H R+H
Sbjct: 10  EKPYECSVCGKAFSHRQSLSVHQRIH 35


>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           311- 343) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKP+RC+ C+KSF Q + L +H   H+GEKP
Sbjct: 10  EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40



 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKPFRC  CD+ F Q S++ +H   H+GE+P
Sbjct: 10  EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40



 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+P+RC  C K+F   S L  H  IH+GEKP
Sbjct: 10  EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40



 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKP++C  C   F Q   LN H  +H
Sbjct: 10  EKPFRCDTCDKSFRQRSALNSHRMIH 35


>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           612- 644) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKP+ C +C KSFS ++ L  H R H+GEKP
Sbjct: 10  EKPFECAECGKSFSISSQLATHQRIHTGEKP 40



 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+P+ C  C K+FS SS L  H RIH+GEKP
Sbjct: 10  EKPFECAECGKSFSISSQLATHQRIHTGEKP 40



 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKPF C  C + FS SS + TH R H+GE+P
Sbjct: 10  EKPFECAECGKSFSISSQLATHQRIHTGEKP 40



 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKP++C  C   FS S  L  H R+H
Sbjct: 10  EKPFECAECGKSFSISSQLATHQRIH 35



 Score = 28.5 bits (62), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 122 GKTYARPSTLKTHLRTHSGEKP 143
           GK+++  S L TH R H+GEKP
Sbjct: 19  GKSFSISSQLATHQRIHTGEKP 40


>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           255- 287) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C  C KAF   S L +H RIH+GEKP
Sbjct: 10  EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40



 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY CE+C K+F   + L  H R H+GEKP
Sbjct: 10  EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40



 Score = 35.0 bits (79), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C  C + F   S +  H R H+GE+P
Sbjct: 10  EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40



 Score = 28.9 bits (63), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY C+ C   F     L  H R+H
Sbjct: 10  EKPYNCEECGKAFIHDSQLQEHQRIH 35


>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           397- 429) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C++C KAF  SS L +H  +HSGE+P
Sbjct: 10  EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40



 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+C+ C K+F  +++L  H   HSGE+P
Sbjct: 10  EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40



 Score = 37.7 bits (86), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C +C + F  SS +  H   HSGERP
Sbjct: 10  EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40



 Score = 28.5 bits (62), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           EKPY+C++C   F  S +L +H  VH  +
Sbjct: 10  EKPYKCQVCGKAFRVSSHLVQHHSVHSGE 38


>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           551- 583) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           E PY C +C K+FS+   L +H RTH+GEKP
Sbjct: 10  ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40



 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 18/31 (58%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E PY C  C KAFS    L  H R H+GEKP
Sbjct: 10  ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40



 Score = 35.4 bits (80), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           E P+ C  C + FS+   + +H RTH+GE+P
Sbjct: 10  ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40



 Score = 28.9 bits (63), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 122 GKTYARPSTLKTHLRTHSGEKP 143
           GK ++R   L +H RTH+GEKP
Sbjct: 19  GKAFSRKYQLISHQRTHAGEKP 40


>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 347
          Length = 46

 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+C +C K+F   +NLT H   H+GEKP
Sbjct: 10  EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40



 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C KAF   S LT H  IH+GEKP
Sbjct: 10  EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40



 Score = 36.6 bits (83), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C + F   S++TTH   H+GE+P
Sbjct: 10  EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40


>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
           592- 624) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C K F  +S L++H RIH+GEKP
Sbjct: 10  EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40



 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+C +C K F   + L+ H R H+GEKP
Sbjct: 10  EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40



 Score = 35.0 bits (79), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C + F  +S ++ H R H+GE+P
Sbjct: 10  EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40



 Score = 30.0 bits (66), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C  C   F  +  L+RH R+H
Sbjct: 10  EKPYKCNECGKVFRHNSYLSRHQRIH 35


>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           715- 747) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY C +C KSF Q ++L  H R H+GEKP
Sbjct: 10  EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40



 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C  C K+F   S L +H RIH+GEKP
Sbjct: 10  EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40



 Score = 34.3 bits (77), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C  C + F Q S +  H R H+GE+P
Sbjct: 10  EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40



 Score = 32.7 bits (73), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 16/26 (61%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY C  C   F Q  +LNRH R+H
Sbjct: 10  EKPYICNECGKSFIQKSHLNRHRRIH 35


>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           301- 331) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           SGEKPY C +C K FS  + L  H R H+GEK
Sbjct: 6   SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37



 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           SGE+PY C  C K FS  S L  H RIH+GEK
Sbjct: 6   SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37



 Score = 37.0 bits (84), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           SGEKP+ C  C + FS  S +  H R H+GE+
Sbjct: 6   SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37



 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 15/28 (53%)

Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           SGEKPY C  C   FS    L  H R+H
Sbjct: 6   SGEKPYGCNECGKDFSSKSYLIVHQRIH 33


>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           199- 231) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EK ++C +C + FSQSS + TH R H+GE+P
Sbjct: 10  EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40



 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EK Y+C+ C K FSQ+++L  H R H+GEKP
Sbjct: 10  EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40



 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+ Y+C +C K FS SS L  H R+H+GEKP
Sbjct: 10  EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40



 Score = 32.7 bits (73), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EK Y+C +C   FSQS +L  H RVH
Sbjct: 10  EKCYKCDVCGKEFSQSSHLQTHQRVH 35



 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 120 IPGKTYARPSTLKTHLRTHSGEKP 143
           + GK +++ S L+TH R H+GEKP
Sbjct: 17  VCGKEFSQSSHLQTHQRVHTGEKP 40


>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+P+ C  C KAFSD   L +H RIH+GEKP
Sbjct: 10  EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40



 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKP+ C DC K+FS    L  H R H+GEKP
Sbjct: 10  EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40



 Score = 34.7 bits (78), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKPF C  C + FS    +  H R H+GE+P
Sbjct: 10  EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40



 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKP+ C  C   FS    LN+H R+H
Sbjct: 10  EKPFDCIDCGKAFSDHIGLNQHRRIH 35


>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           415- 447) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 25/31 (80%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           +K ++C +C K+F+Q+++LT H R H+GEKP
Sbjct: 10  KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40



 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           ++ ++C  CKK F+ SS+LT H RIH+GEKP
Sbjct: 10  KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40



 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           +K F+C  C + F+QSSS+T H R H+GE+P
Sbjct: 10  KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40


>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           368- 400) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+C +C K+F   ++L  H  THSGEKP
Sbjct: 10  EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40



 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C KAF   S+L  H   HSGEKP
Sbjct: 10  EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40



 Score = 37.4 bits (85), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C + F   SS+  H  THSGE+P
Sbjct: 10  EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40


>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           341- 373) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           E+ +RC DC K F QA+N   H R H+GEKP
Sbjct: 10  ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40



 Score = 37.0 bits (84), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           ER +RC  C K F  +S   +H RIH+GEKP
Sbjct: 10  ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40



 Score = 31.6 bits (70), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           E+  RC  C + F Q+S+   H R H+GE+P
Sbjct: 10  ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40


>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           411- 441) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGE 169
           EKPY C +C K+F+  +NL  H RTH+GE
Sbjct: 10  EKPYECNECQKAFNTKSNLMVHQRTHTGE 38



 Score = 38.1 bits (87), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
           E+PY C  C+KAF+  S L  H R H+GE
Sbjct: 10  EKPYECNECQKAFNTKSNLMVHQRTHTGE 38



 Score = 35.0 bits (79), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
           EKP+ C  C + F+  S++  H RTH+GE
Sbjct: 10  EKPYECNECQKAFNTKSNLMVHQRTHTGE 38



 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C  C   F+   NL  H R H
Sbjct: 10  EKPYECNECQKAFNTKSNLMVHQRTH 35


>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C  C KAFS  S+LT H  IH+G+KP
Sbjct: 10  EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40



 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY C  C K+FS  ++LT H   H+G+KP
Sbjct: 10  EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40



 Score = 37.0 bits (84), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C  C + FS  SS+TTH   H+G++P
Sbjct: 10  EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40



 Score = 27.7 bits (60), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C  C   FS   +L  H  +H
Sbjct: 10  EKPYECNQCGKAFSVRSSLTTHQAIH 35


>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
           Free Structure With Those In Nucleic-Acid Complexes
          Length = 85

 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 147 EDCNKSFSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSSVTTHMRTHSG 196
           E+C K+F +   L  H  +H+ + P+ CP   CD+RFS  S +  H + H+G
Sbjct: 7   ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58



 Score = 37.4 bits (85), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTHSG 168
           GK + + + LK H  +H+ + PY C  E C+K FS  + L  H + H+G
Sbjct: 10  GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58



 Score = 34.3 bits (77), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 177 CDRRFSQSSSVTTHMRTHSGERPYRC--RLCKKAFSDSSTLTKHLRIHSGEKPYQCK 231
           C + F + + +  H  +H+ + PY C    C K FS  S L +H ++H+G   Y CK
Sbjct: 9   CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCK 62



 Score = 32.7 bits (73), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 205 CKKAFSDSSTLTKHLRIHSGEKPYQC--KLCLLRFSQSGNLNRHMRVHG 251
           C KAF   + L  H   H+ + PY+C  + C  RFS    L RH +VH 
Sbjct: 9   CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57


>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
           Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
           Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
           Reveals Two Modes Of Molecular Recognition
 pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
           Rrna 55mer (Nmr Structure)
          Length = 87

 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 147 EDCNKSFSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSSVTTHMRTHSG 196
           E+C K+F +   L  H  +H+ + P+ CP   CD+RFS  S +  H + H+G
Sbjct: 7   ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58



 Score = 37.4 bits (85), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTHSG 168
           GK + + + LK H  +H+ + PY C  E C+K FS  + L  H + H+G
Sbjct: 10  GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58



 Score = 34.3 bits (77), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 177 CDRRFSQSSSVTTHMRTHSGERPYRC--RLCKKAFSDSSTLTKHLRIHSGEKPYQCK 231
           C + F + + +  H  +H+ + PY C    C K FS  S L +H ++H+G   Y CK
Sbjct: 9   CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCK 62



 Score = 32.7 bits (73), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 205 CKKAFSDSSTLTKHLRIHSGEKPYQC--KLCLLRFSQSGNLNRHMRVHG 251
           C KAF   + L  H   H+ + PY+C  + C  RFS    L RH +VH 
Sbjct: 9   CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57


>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           687- 719) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           ER Y C  C KAF+  STL  H RIH+GEKP
Sbjct: 10  ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           E+ Y C +C K+F++ + L  H R H+GEKP
Sbjct: 10  ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           E+ + C  C + F++ S++  H R H+GE+P
Sbjct: 10  ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40



 Score = 31.6 bits (70), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 14/22 (63%), Positives = 16/22 (72%)

Query: 122 GKTYARPSTLKTHLRTHSGEKP 143
           GK +AR STL  H R H+GEKP
Sbjct: 19  GKAFARKSTLIMHQRIHTGEKP 40


>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           435- 467) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY C DC KSF + + L  H R H+GE P
Sbjct: 10  EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40



 Score = 37.0 bits (84), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C  C K+F   S L  H RIH+GE P
Sbjct: 10  EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40



 Score = 34.3 bits (77), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C  C + F + S +  H R H+GE P
Sbjct: 10  EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40



 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C  C   F +   L+ H R+H
Sbjct: 10  EKPYECSDCGKSFIKKSQLHVHQRIH 35


>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           598- 626) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+CE C   F Q A+L AHV  H+G  P
Sbjct: 9   EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39



 Score = 32.7 bits (73), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C  RF Q + +  H+  H+G  P
Sbjct: 9   EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39



 Score = 32.0 bits (71), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C+ C  RF Q  +L  H+ +H
Sbjct: 9   EKPYKCETCGARFVQVAHLRAHVLIH 34



 Score = 31.6 bits (70), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C   F   + L  H+ IH+G  P
Sbjct: 9   EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39


>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 224
          Length = 46

 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EK Y C++C KSFS+A  L  H R HSGEKP
Sbjct: 10  EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40



 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+ Y C+ C K+FS +  L KH R+HSGEKP
Sbjct: 10  EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40



 Score = 32.0 bits (71), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EK + C  C + FS++  +  H R HSGE+P
Sbjct: 10  EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40



 Score = 27.7 bits (60), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 122 GKTYARPSTLKTHLRTHSGEKP 143
           GK+++R   L  H R HSGEKP
Sbjct: 19  GKSFSRAPCLLKHERLHSGEKP 40


>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
           Suppressor Protein (Wt1) Finger 3
          Length = 29

 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 22/29 (75%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           KPF+C  C R+FS+S  + TH RTH+GE+
Sbjct: 1   KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29



 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           KP++C+ C + FS++ +L  H RTH+GEK
Sbjct: 1   KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29



 Score = 34.3 bits (77), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           +P++C+ C++ FS S  L  H R H+GEK
Sbjct: 1   KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29



 Score = 33.1 bits (74), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 226 KPYQCKLCLLRFSQSGNLNRHMRVH 250
           KP+QCK C  +FS+S +L  H R H
Sbjct: 1   KPFQCKTCQRKFSRSDHLKTHTRTH 25


>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           536- 568) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           +PY C  C KAFS  S+LT H  IH+GEKP
Sbjct: 11  KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40



 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           KPY C +C K+FS  ++LT H   H+GEKP
Sbjct: 11  KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40



 Score = 36.2 bits (82), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           KP+ C  C + FS  SS+TTH   H+GE+P
Sbjct: 11  KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40


>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
          Length = 29

 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 23/29 (79%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           KP +C  C K+F+QA++L AHVR H+GEK
Sbjct: 1   KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29



 Score = 37.0 bits (84), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           +P +C +C KAF+ +S+L  H+R H+GEK
Sbjct: 1   KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29



 Score = 36.6 bits (83), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 22/29 (75%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           KP +C +C + F+Q+SS+  H+R H+GE+
Sbjct: 1   KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29


>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           507- 539) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+CE C K ++   NL  H + H+GE+P
Sbjct: 10  EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40



 Score = 36.2 bits (82), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C K ++    L  H ++H+GE+P
Sbjct: 10  EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40



 Score = 33.9 bits (76), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C + ++   ++  H + H+GERP
Sbjct: 10  EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40



 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C+ C   ++   NL+ H +VH
Sbjct: 10  EKPYKCEKCGKGYNSKFNLDMHQKVH 35


>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           395- 427) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKP++CE+C K F   +   +H R+HSGEKP
Sbjct: 10  EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40



 Score = 38.1 bits (87), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKPF+C  C + F  +S   +H R+HSGE+P
Sbjct: 10  EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40



 Score = 36.6 bits (83), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+P++C  C K F  +S    H R HSGEKP
Sbjct: 10  EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40


>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
           Zinc Finger Protein 268
          Length = 42

 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGE 169
           SGE PY C +C K+F++   L +H RTH+GE
Sbjct: 6   SGENPYECSECGKAFNRKDQLISHQRTHAGE 36



 Score = 37.7 bits (86), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
           SGE PY C  C KAF+    L  H R H+GE
Sbjct: 6   SGENPYECSECGKAFNRKDQLISHQRTHAGE 36



 Score = 35.8 bits (81), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
           SGE P+ C  C + F++   + +H RTH+GE
Sbjct: 6   SGENPYECSECGKAFNRKDQLISHQRTHAGE 36



 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           SGE PY+C  C   F++   L  H R H  +
Sbjct: 6   SGENPYECSECGKAFNRKDQLISHQRTHAGE 36


>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           648- 680) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+C +C K F+Q ++L  H R H+G KP
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40



 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C K F+ +S L +H R+H+G KP
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40



 Score = 35.0 bits (79), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C + F+Q+S +  H R H+G +P
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40



 Score = 33.5 bits (75), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C  C   F+Q+ +L RH RVH
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRRVH 35


>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           564- 596) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C K F+ +S L +H  IH+GEKP
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+C +C K F+Q ++L  H   H+GEKP
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 35.0 bits (79), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C + F+Q+S +  H   H+GE+P
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C  C   F+Q+ +L RH  +H
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRGIH 35


>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           508- 540) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+C +C K F+Q ++L  H R H+G KP
Sbjct: 10  EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40



 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C K F+ +S L  H RIH+G KP
Sbjct: 10  EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40



 Score = 36.2 bits (82), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C + F+Q+S +  H R H+G +P
Sbjct: 10  EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40



 Score = 31.2 bits (69), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C  C   F+Q+ +L  H R+H
Sbjct: 10  EKPYKCNECGKVFTQNSHLANHQRIH 35


>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 32
          Length = 41

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           SG++ Y C++C KSF Q  +LT H R H+G  P
Sbjct: 6   SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38



 Score = 37.7 bits (86), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           SG+R Y C+ C K+F    +LT H RIH+G  P
Sbjct: 6   SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38



 Score = 32.3 bits (72), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           SG++ + C  C + F Q  S+T H R H+G  P
Sbjct: 6   SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38



 Score = 31.2 bits (69), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           SG++ Y+C+ C   F Q G+L  H R+H
Sbjct: 6   SGQRVYECQECGKSFRQKGSLTLHERIH 33


>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           603- 635) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C +C K+F+  S L  H +IH+GEKP
Sbjct: 10  EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40



 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY C  C KSF++ + L  H + H+GEKP
Sbjct: 10  EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C IC + F++ S +  H + H+GE+P
Sbjct: 10  EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40



 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C +C   F++   L+ H ++H
Sbjct: 10  EKPYECSICGKSFTKKSQLHVHQQIH 35


>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           340- 372) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C K F+ +S L +H  IH+GEKP
Sbjct: 10  EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40



 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+C +C K F+Q ++L  H   H+GEKP
Sbjct: 10  EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40



 Score = 34.7 bits (78), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C + F+Q+S +  H   H+GE+P
Sbjct: 10  EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40



 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C  C   F+Q+ +L RH  +H
Sbjct: 10  EKPYKCNECGKVFTQNSHLVRHRGIH 35


>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           547- 579) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 20/31 (64%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           ER Y C  C KAF   STL+ H RIH GEKP
Sbjct: 10  ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40



 Score = 37.7 bits (86), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           E+ Y C +C K+F Q + L+ H R H GEKP
Sbjct: 10  ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40



 Score = 32.0 bits (71), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           E+ + C  C + F Q S+++ H R H GE+P
Sbjct: 10  ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40



 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 122 GKTYARPSTLKTHLRTHSGEKP 143
           GK + + STL  H R H GEKP
Sbjct: 19  GKAFIQKSTLSMHQRIHRGEKP 40


>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Transcriptional Repressor Ctcf
          Length = 86

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 136 RTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK----PFRCPICDRRFSQSSSVTTHM 191
           RTH+GEKPY C  C+K+F Q   L  H + +         F C  C + F++ +++  H 
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67

Query: 192 RTHSG 196
              +G
Sbjct: 68  DNCAG 72



 Score = 35.8 bits (81), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 192 RTHSGERPYRCRLCKKAFSDSSTLTKHL-RIHSGE---KPYQCKLCLLRFSQSGNLNRH 246
           RTH+GE+PY C  C K F     L  H  R H        + C  C   F++   + RH
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66



 Score = 32.0 bits (71), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 220 RIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGSQYNMLPVIYM 262
           R H+GEKPY C  C   F Q   L+ H + +    N +P  ++
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY-HDPNFVPAAFV 49


>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           719- 751) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+P+ CR C K+FS +S L  H RIH+GE P
Sbjct: 10  EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40



 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKP+ C +C KSFS  + L  H R H+GE P
Sbjct: 10  EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40



 Score = 33.1 bits (74), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP  C  C + FS +S +  H R H+GE P
Sbjct: 10  EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40


>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
          Length = 29

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 199 PYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           P +CR C K F+ S  L +HLRIHSGEK
Sbjct: 2   PLKCRECGKQFTTSGNLKRHLRIHSGEK 29



 Score = 38.1 bits (87), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 143 PYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           P +C +C K F+ + NL  H+R HSGEK
Sbjct: 2   PLKCRECGKQFTTSGNLKRHLRIHSGEK 29



 Score = 33.5 bits (75), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 227 PYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           P +C+ C  +F+ SGNL RH+R+H  +
Sbjct: 2   PLKCRECGKQFTTSGNLKRHLRIHSGE 28



 Score = 32.3 bits (72), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 171 PFRCPICDRRFSQSSSVTTHMRTHSGER 198
           P +C  C ++F+ S ++  H+R HSGE+
Sbjct: 2   PLKCRECGKQFTTSGNLKRHLRIHSGEK 29


>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           312- 344) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+ Y+C  C K FS +S L++H +IH+GEKP
Sbjct: 10  EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40



 Score = 38.5 bits (88), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EK Y+C +C K FS+ + L+ H + H+GEKP
Sbjct: 10  EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40



 Score = 33.9 bits (76), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 22/31 (70%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EK ++C  C + FS++S ++ H + H+GE+P
Sbjct: 10  EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40



 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 122 GKTYARPSTLKTHLRTHSGEKP 143
           GK ++R S L  H + H+GEKP
Sbjct: 19  GKVFSRNSQLSQHQKIHTGEKP 40


>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           859- 889) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGE 169
           EKPY C +C K+F + + L  H RTHSGE
Sbjct: 10  EKPYECSECGKAFIRNSQLIVHQRTHSGE 38



 Score = 35.8 bits (81), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 18/29 (62%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
           E+PY C  C KAF  +S L  H R HSGE
Sbjct: 10  EKPYECSECGKAFIRNSQLIVHQRTHSGE 38



 Score = 35.0 bits (79), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
           EKP+ C  C + F ++S +  H RTHSGE
Sbjct: 10  EKPYECSECGKAFIRNSQLIVHQRTHSGE 38


>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           641- 673) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E P++C  C K FS S+ L+KH  IH+GE P
Sbjct: 10  EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40



 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           E P++C +C K+FS +A+L+ H   H+GE P
Sbjct: 10  EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40



 Score = 34.7 bits (78), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           E PF+C  C + FS S+ ++ H   H+GE P
Sbjct: 10  EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40



 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           E P++C  C   FS S +L++H  +H  +
Sbjct: 10  EHPFKCNECGKTFSHSAHLSKHQLIHAGE 38


>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           284- 316) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           EKPY+C +C K+F   +NLT H   H+GEK
Sbjct: 10  EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39



 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+PY+C  C KAF   S LT H  IH+GEK
Sbjct: 10  EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39



 Score = 33.1 bits (74), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           EKP++C  C + F   S++TTH   H+GE+
Sbjct: 10  EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39


>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           273- 303) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           SGEKPF C  C++ FS  S +  H +TH+ E+P
Sbjct: 6   SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38



 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           SGE+P+ C  C+KAFS  S L  H + H+ EKP
Sbjct: 6   SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38



 Score = 38.1 bits (87), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           SGEKP+ C  C K+FS  + L  H +TH+ EKP
Sbjct: 6   SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38


>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
           659- 691) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           EKPY+C DC K+F++ + L  H ++H+GE+
Sbjct: 10  EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39



 Score = 34.3 bits (77), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           EKP++C  C + F++ S +  H ++H+GER
Sbjct: 10  EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39



 Score = 33.1 bits (74), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+PY+C  C KAF+  S L  H + H+GE+
Sbjct: 10  EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39


>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           519- 551) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           EKPY+C DC KSF+  + L  H + H+GE+
Sbjct: 10  EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39



 Score = 32.7 bits (73), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           EKP++C  C + F+  S +  H + H+GER
Sbjct: 10  EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39



 Score = 32.0 bits (71), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+PY+C  C K+F+  S L  H + H+GE+
Sbjct: 10  EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39


>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           637- 667) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           SGEKPY C +C K+F+  + L  H   H+G KP
Sbjct: 6   SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38



 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           SGE+PY C  C KAF+  S L  H  +H+G KP
Sbjct: 6   SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38



 Score = 32.7 bits (73), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           SGEKP+ C  C + F+  S +  H   H+G +P
Sbjct: 6   SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38



 Score = 27.7 bits (60), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           SGEKPY C  C   F+    L  H  VH
Sbjct: 6   SGEKPYSCNECGKAFTFKSQLIVHKGVH 33


>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
           Zinc Finger Protein 224
          Length = 46

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKP++C +C K FS+ + L  H + H+GEKP
Sbjct: 10  EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+P++C  C K FS  S L  H ++H+GEKP
Sbjct: 10  EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40



 Score = 37.4 bits (85), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKPF+C  C + FS+ S++  H + H+GE+P
Sbjct: 10  EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40


>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
           An Extension To The Rules For Zinc-FingerDNA RECOGNITION
 pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
           An Extension To The Rules For Zinc-FingerDNA RECOGNITION
          Length = 66

 Score = 38.9 bits (89), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 137 THSGEKPYRCEDCNKSFSQAANLTAH-VRTHSGE-KPFRCPICDRRFSQSSSVTTHMR 192
           T  GE  YRC+ C++ ++  +N   H V +H    K + CP C + F++  ++T H++
Sbjct: 4   TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61



 Score = 37.7 bits (86), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 193 THSGERPYRCRLCKKAFSDSSTLTKHLRIHSGE--KPYQCKLCLLRFSQSGNLNRHMRV 249
           T  GE  YRC++C + ++  S   +H         K Y C  C   F++  N+  H+++
Sbjct: 4   TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62



 Score = 36.6 bits (83), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 165 THSGEKPFRCPICDRRFSQSSSVTTHMRTHSGE--RPYRCRLCKKAFSDSSTLTKHLRI 221
           T  GE  +RC +C R ++  S+   H  T      + Y C  C K F+    +T H++I
Sbjct: 4   TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62


>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           204- 236) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           KPY+C +C KSFS +  LT H  TH+ EKP
Sbjct: 11  KPYQCSECGKSFSGSYRLTQHWITHTREKP 40



 Score = 34.7 bits (78), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           +PY+C  C K+FS S  LT+H   H+ EKP
Sbjct: 11  KPYQCSECGKSFSGSYRLTQHWITHTREKP 40



 Score = 31.2 bits (69), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           KP++C  C + FS S  +T H  TH+ E+P
Sbjct: 11  KPYQCSECGKSFSGSYRLTQHWITHTREKP 40


>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           732- 764) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           ++PY+C  C K F+ +S L +H  IH+GEKP
Sbjct: 10  KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 38.5 bits (88), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           +KPY+C +C K F+Q ++L  H   H+GEKP
Sbjct: 10  KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           +KP++C  C + F+Q+S +  H   H+GE+P
Sbjct: 10  KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           +KPY+C  C   F+Q+ +L RH  +H
Sbjct: 10  KKPYKCNECGKVFTQNSHLARHRGIH 35


>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 347
          Length = 46

 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C K F  +S L +H  IH+GEKP
Sbjct: 10  EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+C +C K F + ++L  H   H+GEKP
Sbjct: 10  EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40



 Score = 32.3 bits (72), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C + F ++S +  H   H+GE+P
Sbjct: 10  EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40


>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           484- 512) Of Human Zinc Finger Protein 473
          Length = 42

 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHS 223
           SGE+PY C  CK+ FSD++ L +H ++H+
Sbjct: 6   SGEKPYSCAECKETFSDNNRLVQHQKMHT 34



 Score = 33.5 bits (75), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHS 167
           SGEKPY C +C ++FS    L  H + H+
Sbjct: 6   SGEKPYSCAECKETFSDNNRLVQHQKMHT 34



 Score = 31.6 bits (70), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           SGEKPY C  C   FS +  L +H ++H
Sbjct: 6   SGEKPYSCAECKETFSDNNRLVQHQKMH 33



 Score = 30.0 bits (66), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHS 195
           SGEKP+ C  C   FS ++ +  H + H+
Sbjct: 6   SGEKPYSCAECKETFSDNNRLVQHQKMHT 34


>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
           Finger Protein 278
          Length = 45

 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSG 196
           SGEKP+ CP+C  RF +   ++ H+R+H G
Sbjct: 6   SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35



 Score = 35.4 bits (80), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           SGEKPY C +C LRF +   ++ H+R H
Sbjct: 6   SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33



 Score = 33.5 bits (75), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSG 168
           SGEKPY C  C   F +   ++ HVR+H G
Sbjct: 6   SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35



 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSG 224
           SGE+PY C +C   F     ++ H+R H G
Sbjct: 6   SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35


>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           809- 841) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
           E+PY C +C KAF  S+ L +HLR+H+ E
Sbjct: 10  EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38



 Score = 35.0 bits (79), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGE 169
           EKPY C  C K+F  +A+L  H+R H+ E
Sbjct: 10  EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38



 Score = 34.7 bits (78), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY C +C   F  S +LN+H+RVH
Sbjct: 10  EKPYSCNVCGKAFVLSAHLNQHLRVH 35



 Score = 32.0 bits (71), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
           EKP+ C +C + F  S+ +  H+R H+ E
Sbjct: 10  EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38


>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           724- 756) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 38.1 bits (87), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           ++PY C +C K+F   ++L  H R+H+GEKP
Sbjct: 10  QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40



 Score = 37.4 bits (85), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           +RPY C  C KAF   S+L  H R H+GEKP
Sbjct: 10  QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           ++P+ C  C + F   SS+  H R+H+GE+P
Sbjct: 10  QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40


>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           339- 371) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 38.1 bits (87), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+CE+C K F    +L  H   H+GEKP
Sbjct: 10  EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C K F     L  H  +H+GEKP
Sbjct: 10  EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40



 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C + F     + TH   H+GE+P
Sbjct: 10  EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40


>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           385- 413) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 38.1 bits (87), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
           SG++PY C  C KAF   S L  H RIH+GE
Sbjct: 6   SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36



 Score = 38.1 bits (87), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGE 169
           SG+KPY C +C K+F   + L  H R H+GE
Sbjct: 6   SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36



 Score = 32.3 bits (72), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
           SG+KP+ C  C + F   S +  H R H+GE
Sbjct: 6   SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36


>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 484
          Length = 42

 Score = 38.1 bits (87), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGE 169
           SGEKPY C +C K+F + ++   H R H+GE
Sbjct: 6   SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36



 Score = 37.0 bits (84), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
           SGE+PY C  C KAF   S    H RIH+GE
Sbjct: 6   SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36



 Score = 33.9 bits (76), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
           SGEKP+ C  C + F + S   TH R H+GE
Sbjct: 6   SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36



 Score = 28.1 bits (61), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           SGEKPY C  C   F +  +   H R+H
Sbjct: 6   SGEKPYVCTECGKAFIRKSHFITHERIH 33


>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           780- 812) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 37.7 bits (86), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           +KPY C++C K+F Q  +L  H R H+GE+
Sbjct: 10  KKPYECKECRKTFIQIGHLNQHKRVHTGER 39



 Score = 36.2 bits (82), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVHGSQYNMLP 258
           +KPY+CK C   F Q G+LN+H RVH  + +  P
Sbjct: 10  KKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43



 Score = 34.3 bits (77), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           ++PY C+ C+K F     L +H R+H+GE+
Sbjct: 10  KKPYECKECRKTFIQIGHLNQHKRVHTGER 39



 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           +KP+ C  C + F Q   +  H R H+GER
Sbjct: 10  KKPYECKECRKTFIQIGHLNQHKRVHTGER 39


>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 32
          Length = 45

 Score = 37.7 bits (86), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           +KP+ C  C KSF    NL  H R H+GEK
Sbjct: 10  QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39



 Score = 33.9 bits (76), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           ++P+ C  C K+F     L  H RIH+GEK
Sbjct: 10  QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39



 Score = 33.1 bits (74), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           +KPF C  C + F    ++ TH R H+GE+
Sbjct: 10  QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39



 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           +KP++C  C   F   GNL  H R+H
Sbjct: 10  QKPFECTHCGKSFRAKGNLVTHQRIH 35


>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
          Length = 30

 Score = 37.7 bits (86), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           +PY C  C++ F+D   L +H+RIH+GEK
Sbjct: 2   KPYVCIHCQRQFADPGALQRHVRIHTGEK 30



 Score = 34.3 bits (77), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           KPY C  C + F+    L  HVR H+GEK
Sbjct: 2   KPYVCIHCQRQFADPGALQRHVRIHTGEK 30



 Score = 31.2 bits (69), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           KP+ C  C R+F+   ++  H+R H+GE+
Sbjct: 2   KPYVCIHCQRQFADPGALQRHVRIHTGEK 30



 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 226 KPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           KPY C  C  +F+  G L RH+R+H  +
Sbjct: 2   KPYVCIHCQRQFADPGALQRHVRIHTGE 29


>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
           Zinc Finger Protein 224
          Length = 46

 Score = 37.7 bits (86), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EK ++C +C+  FSQA++L  H   H GEKP
Sbjct: 10  EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40



 Score = 35.8 bits (81), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+ ++CR C   FS +S+L  H  +H GEKP
Sbjct: 10  EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40



 Score = 35.4 bits (80), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EK ++C  CD  FSQ+SS+  H   H GE+P
Sbjct: 10  EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40



 Score = 28.1 bits (61), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EK ++C+ C + FSQ+ +L  H  VH
Sbjct: 10  EKTWKCRECDMCFSQASSLRLHQNVH 35


>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           426- 458) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 37.7 bits (86), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY+C +C K+F +  +L  H R H+G +P
Sbjct: 10  EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40



 Score = 37.0 bits (84), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY+C  C KAF   + L +H RIH+G +P
Sbjct: 10  EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40



 Score = 32.3 bits (72), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP++C  C + F + + +  H R H+G RP
Sbjct: 10  EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40



 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY+C  C   F +  +LN H R+H
Sbjct: 10  EKPYKCSECGKAFHRHTHLNEHRRIH 35


>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           329- 359) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 37.4 bits (85), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           SGE+ + C  C+K FS  S L  H RIH+GE P
Sbjct: 6   SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38



 Score = 37.0 bits (84), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           SGEK + C +C K+FS  + L  H R H+GE P
Sbjct: 6   SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38



 Score = 32.0 bits (71), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           SGEK   C  C + FS  S +  H R H+GE P
Sbjct: 6   SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38


>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
           771- 803) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 37.4 bits (85), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C  C KAF+  S L KH +IH+ +KP
Sbjct: 10  EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40



 Score = 36.6 bits (83), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY C +C K+F+  +NL  H + H+ +KP
Sbjct: 10  EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40



 Score = 29.3 bits (64), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C  C + F+  S++  H + H+ ++P
Sbjct: 10  EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40



 Score = 28.9 bits (63), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           EKPY C  C   F+   NL +H ++H  Q
Sbjct: 10  EKPYICAECGKAFTIRSNLIKHQKIHTKQ 38


>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           441- 469) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 37.0 bits (84), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSG 168
           SGEKPY C DC K+F+  + L  H   H+G
Sbjct: 6   SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35



 Score = 35.4 bits (80), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSG 224
           SGE+PY C  C KAF+  S L  H  IH+G
Sbjct: 6   SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35



 Score = 30.0 bits (66), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSG 196
           SGEKP+ C  C + F+  S +  H   H+G
Sbjct: 6   SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35


>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           423- 455) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 37.0 bits (84), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           EKPY+C +C K + +  +L  H R H+GEK
Sbjct: 10  EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39



 Score = 32.3 bits (72), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+PY+C  C K +     L  H R+H+GEK
Sbjct: 10  EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39



 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           EKP++C  C + + +   +  H R H+GE+
Sbjct: 10  EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39


>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           628- 660) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 37.0 bits (84), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           E+P++C +C K F + ++L  H+R HS EK
Sbjct: 10  ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39



 Score = 37.0 bits (84), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           ERP++C  C K F   S L  HLR+HS EK
Sbjct: 10  ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39



 Score = 31.6 bits (70), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           E+PF+C  C + F + S +  H+R HS E+
Sbjct: 10  ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39


>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           463- 495) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 37.0 bits (84), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           E P+ C +C K F+   NL  H + H+GE+P
Sbjct: 10  ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40



 Score = 34.7 bits (78), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E P+ C  C K F+  + L  H +IH+GE+P
Sbjct: 10  ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40



 Score = 33.9 bits (76), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           E PF C  C + F+  +++  H + H+GERP
Sbjct: 10  ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40


>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
           Zinc Finger Protein 268
          Length = 46

 Score = 37.0 bits (84), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           KPY C  C K+FS  + L  H R+H+G KP
Sbjct: 11  KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40



 Score = 32.7 bits (73), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 17/30 (56%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           +PY C  C K FS  S L  H R H+G KP
Sbjct: 11  KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40



 Score = 31.6 bits (70), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           KP+ C  C + FS  S +  H R+H+G +P
Sbjct: 11  KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40


>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           379- 411) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 36.6 bits (83), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 200 YRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           + C  C KAF+  STL+ H +IH+GEKP
Sbjct: 13  FECTECGKAFTRKSTLSMHQKIHTGEKP 40



 Score = 34.7 bits (78), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           K + C +C K+F++ + L+ H + H+GEKP
Sbjct: 11  KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           K F C  C + F++ S+++ H + H+GE+P
Sbjct: 11  KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40



 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 122 GKTYARPSTLKTHLRTHSGEKP 143
           GK + R STL  H + H+GEKP
Sbjct: 19  GKAFTRKSTLSMHQKIHTGEKP 40


>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
           Finger Protein 278
          Length = 54

 Score = 36.2 bits (82), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVR-THSGEKPFRCPI 176
           KPY C+ C K FS+  +L  H++  H+ E+P +C +
Sbjct: 11  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46



 Score = 33.9 bits (76), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLR-IHSGEKPYQCKL 232
           +PY C+ C K FS    L  H++ +H+ E+P++C++
Sbjct: 11  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46



 Score = 31.2 bits (69), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMR-THSGERPYRCRL 204
           KP+ C  C + FS+   +  H++  H+ ERP++C++
Sbjct: 11  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46


>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           283- 315) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 36.2 bits (82), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+P++C +C K+F   S L +H  +H+ EKP
Sbjct: 10  EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40



 Score = 35.0 bits (79), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKP++C+ C KSF   + L  H   H+ EKP
Sbjct: 10  EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40



 Score = 33.1 bits (74), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKPF+C IC + F   S +  H   H+ E+P
Sbjct: 10  EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40



 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           EKP++C +C   F     LNRH  VH ++
Sbjct: 10  EKPFKCDICGKSFCGRSRLNRHSMVHTAE 38


>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           495- 525) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 36.2 bits (82), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGE 169
           KPY C +C K+F   + L  H RTH+GE
Sbjct: 11  KPYVCNECGKAFRSKSYLIIHTRTHTGE 38



 Score = 32.3 bits (72), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
           +PY C  C KAF   S L  H R H+GE
Sbjct: 11  KPYVCNECGKAFRSKSYLIIHTRTHTGE 38



 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGE 197
           KP+ C  C + F   S +  H RTH+GE
Sbjct: 11  KPYVCNECGKAFRSKSYLIIHTRTHTGE 38


>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 268
          Length = 42

 Score = 36.2 bits (82), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
           SGE+ + C  C KAFS  S L  H RIH+GE
Sbjct: 6   SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36



 Score = 35.0 bits (79), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGE 169
           SGEK + C +C K+FS  + L  H R H+GE
Sbjct: 6   SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36



 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
           SGEK   C  C + FS  S +  H R H+GE
Sbjct: 6   SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36


>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
           Fog-1
          Length = 35

 Score = 36.2 bits (82), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
           SG++P+ C++CL  F+   N  RH++VH
Sbjct: 3   SGKRPFVCRICLSAFTTKANCARHLKVH 30



 Score = 35.8 bits (81), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 21/29 (72%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHS 223
           SG+RP+ CR+C  AF+  +   +HL++H+
Sbjct: 3   SGKRPFVCRICLSAFTTKANCARHLKVHT 31



 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHS 167
           SG++P+ C  C  +F+  AN   H++ H+
Sbjct: 3   SGKRPFVCRICLSAFTTKANCARHLKVHT 31



 Score = 28.5 bits (62), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHS 195
           SG++PF C IC   F+  ++   H++ H+
Sbjct: 3   SGKRPFVCRICLSAFTTKANCARHLKVHT 31


>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
           Zinc Finger Protein 268
          Length = 46

 Score = 35.8 bits (81), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 143 PYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           PY+C  C KSFS    L  H R H+ EKP
Sbjct: 12  PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40



 Score = 33.5 bits (75), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 199 PYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           PY+C  C+K+FS    L  H R+H+ EKP
Sbjct: 12  PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40



 Score = 28.9 bits (63), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 171 PFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           P++C  C++ FS    +  H R H+ E+P
Sbjct: 12  PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40


>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           626- 654) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 35.4 bits (80), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+PY C +C   F    TL  HLRIH+G  P
Sbjct: 9   EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39



 Score = 34.7 bits (78), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKPY CE C   F     L +H+R H+G  P
Sbjct: 9   EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39



 Score = 33.9 bits (76), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKP+ C IC  RF    ++ +H+R H+G  P
Sbjct: 9   EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39



 Score = 31.6 bits (70), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKPY C++C  RF     L  H+R+H
Sbjct: 9   EKPYPCEICGTRFRHLQTLKSHLRIH 34


>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
          Length = 37

 Score = 35.4 bits (80), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 163 VRTHSGEKPFRCPICDRRFSQSSSVTTHMRTH 194
            R  +G KPF+CP CDR FS+S  +  H + H
Sbjct: 3   TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34



 Score = 33.9 bits (76), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 136 RTHSGEKPYRCEDCNKSFSQAANLTAHVRTH 166
           R  +G KP++C DC++SFS++ +L  H + H
Sbjct: 4   RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34


>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 36

 Score = 35.4 bits (80), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           S  KPY+C  C+ + +  ANL  H+R H+GEK
Sbjct: 5   SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36



 Score = 31.6 bits (70), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           S  KP++CP C    +  +++  H+R H+GE+
Sbjct: 5   SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36



 Score = 30.8 bits (68), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           S  +PY+C  C  A +  + L  HLR H+GEK
Sbjct: 5   SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36


>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
           Domain From Human Krueppel-Like Factor 15
          Length = 48

 Score = 35.0 bits (79), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 169 EKPFRC--PICDRRFSQSSSVTTHMRTHSGERP 199
           EKPF C  P C  RFS+S  ++ H R+HSG +P
Sbjct: 10  EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42



 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 141 EKPYRCE--DCNKSFSQAANLTAHVRTHSGEKP 171
           EKP+ C    C   FS++  L+ H R+HSG KP
Sbjct: 10  EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42



 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 225 EKPYQCKL--CLLRFSQSGNLNRHMRVH 250
           EKP+ C    C  RFS+S  L+RH R H
Sbjct: 10  EKPFACTWPGCGWRFSRSDELSRHRRSH 37



 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 197 ERPYRCRL--CKKAFSDSSTLTKHLRIHSGEKP 227
           E+P+ C    C   FS S  L++H R HSG KP
Sbjct: 10  EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42


>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           355- 385) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 34.7 bits (78), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGE 169
           E PY C +C K FS+   L +H +THSG+
Sbjct: 10  ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38



 Score = 31.2 bits (69), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
           E PY C  C K FS    L  H + HSG+
Sbjct: 10  ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38



 Score = 30.8 bits (68), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
           E P+ C  C + FS+   + +H +THSG+
Sbjct: 10  ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38


>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 28 Homolog
          Length = 47

 Score = 34.7 bits (78), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVR-THSGEKP 171
           +KPY C +C K+F Q  +L  H R  H+GEKP
Sbjct: 10  KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41



 Score = 34.3 bits (77), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLR-IHSGEKP 227
           ++PY C  C KAF  +++L +H R  H+GEKP
Sbjct: 10  KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41



 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMR-THSGERP 199
           +KP+ C  C + F Q++S+  H R  H+GE+P
Sbjct: 10  KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41


>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 268
          Length = 44

 Score = 34.7 bits (78), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSG 168
           EKPY C +C K+F   + L  H RTH+G
Sbjct: 10  EKPYECNECGKAFIWKSLLIVHERTHAG 37



 Score = 30.8 bits (68), Expect = 0.90,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSG 224
           E+PY C  C KAF   S L  H R H+G
Sbjct: 10  EKPYECNECGKAFIWKSLLIVHERTHAG 37



 Score = 29.3 bits (64), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSG 196
           EKP+ C  C + F   S +  H RTH+G
Sbjct: 10  EKPYECNECGKAFIWKSLLIVHERTHAG 37


>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           796- 828) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 34.3 bits (77), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
           EKP+QCK C + FS S +L +H+R H
Sbjct: 10  EKPFQCKECGMNFSWSCSLFKHLRSH 35



 Score = 33.1 bits (74), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           EKP++C++C  +FS + +L  H+R+H    P
Sbjct: 10  EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40



 Score = 32.0 bits (71), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           E+P++C+ C   FS S +L KHLR H    P
Sbjct: 10  EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40



 Score = 31.6 bits (70), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           EKPF+C  C   FS S S+  H+R+H    P
Sbjct: 10  EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40


>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
           Human Zinc Finger Protein 64, Isoforms 1 And 2
          Length = 70

 Score = 33.9 bits (76), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 213 STLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHM-RVHG 251
           + L  H RIH  ++P++C  C     Q  NL++HM + HG
Sbjct: 23  AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62



 Score = 32.3 bits (72), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 129 STLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGE 169
           + L+ H R H  ++P++C  C+    Q +NL+ H++   G+
Sbjct: 23  AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63



 Score = 32.0 bits (71), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 157 ANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
           A L  H R H  ++PF+C  C     Q S+++ HM+   G+
Sbjct: 23  AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63



 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 185 SSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
           +++  H R H  +RP++C  C       S L+KH++   G+
Sbjct: 23  AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63


>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
           Zinc Finger Protein 473
          Length = 44

 Score = 33.9 bits (76), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHS 195
           E PF+C  CDR F+Q + +  H RTH+
Sbjct: 10  ENPFKCSKCDRVFTQRNYLVQHERTHA 36



 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHS 167
           E P++C  C++ F+Q   L  H RTH+
Sbjct: 10  ENPFKCSKCDRVFTQRNYLVQHERTHA 36


>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
           From Human Insulinoma-Associated Protein 1 (Fragment
           424-497), Northeast Structural Genomics Consortium
           Target Hr7614b
          Length = 85

 Score = 33.9 bits (76), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 174 CPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHL 219
           CP+C   F+   +   H+R     + + C+ C   F  S  LT+H+
Sbjct: 31  CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76



 Score = 32.0 bits (71), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 202 CRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHM 247
           C +C ++F+      +HLR+    + + CK C   F  S  L RH+
Sbjct: 31  CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76


>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           768- 800) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 33.5 bits (75), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           K ++C +C + F+  ++L  H R H+GEKP
Sbjct: 11  KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
           + ++C  C + F+  S L +H RIH+GEKP
Sbjct: 11  KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40



 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
           K  +C  C R F+  S +  H R H+GE+P
Sbjct: 11  KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40


>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
           Of Zinc Finger Protein 692
          Length = 78

 Score = 33.1 bits (74), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHS---GEKPFRCPICDRRFSQSSSVTTH 190
           SG    +CE C  +  Q A+L  H R H+       F C  C +RF +  SV  H
Sbjct: 3   SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57


>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
          Length = 26

 Score = 32.7 bits (73), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHS 167
           KPY CE C K F Q++ L  H+R H 
Sbjct: 1   KPYVCERCGKRFVQSSQLANHIRHHD 26



 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHS 195
           KP+ C  C +RF QSS +  H+R H 
Sbjct: 1   KPYVCERCGKRFVQSSQLANHIRHHD 26



 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 226 KPYQCKLCLLRFSQSGNLNRHMRVH 250
           KPY C+ C  RF QS  L  H+R H
Sbjct: 1   KPYVCERCGKRFVQSSQLANHIRHH 25



 Score = 28.1 bits (61), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHS 223
           +PY C  C K F  SS L  H+R H 
Sbjct: 1   KPYVCERCGKRFVQSSQLANHIRHHD 26


>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
          Length = 33

 Score = 32.7 bits (73), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTH 194
           +G KPF+CP CD  FS+S  +  H + H
Sbjct: 3   TGIKPFQCPDCDWSFSRSDHLALHRKRH 30



 Score = 32.0 bits (71), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTH 166
           +G KP++C DC+ SFS++ +L  H + H
Sbjct: 3   TGIKPFQCPDCDWSFSRSDHLALHRKRH 30


>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
           Zinc Finger Protein 278
          Length = 48

 Score = 32.7 bits (73), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 202 CRLCKKAFSDSSTLTKHLRIHSGEKPY 228
           C +C K F D   L +H   HSGEKPY
Sbjct: 15  CEICGKIFRDVYHLNRHKLSHSGEKPY 41



 Score = 31.2 bits (69), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEKPF 172
           K   CE C K F    +L  H  +HSGEKP+
Sbjct: 11  KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41



 Score = 28.1 bits (61), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGERPY 200
           K   C IC + F     +  H  +HSGE+PY
Sbjct: 11  KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41


>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
           Domains Of Zinc Finger Protein 692
          Length = 79

 Score = 32.3 bits (72), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 149 CNKSFSQAANLTAHVR-THSGEKPFRCP--ICDRRFSQSSSVTTHMRTHSGERPYRCRL 204
           C + FS    L  H +  H  +K F CP   C + F+    +  HM+ HS  R Y C  
Sbjct: 15  CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73



 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 175 PICDRRFSQSSSVTTHMR-THSGERPYRCR--LCKKAFSDSSTLTKHLRIHSGEKPYQCK 231
           P C R FS    +  H +  H  ++ + C    C K+F+    L +H+++HS  + Y C+
Sbjct: 13  PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72

Query: 232 L 232
            
Sbjct: 73  F 73


>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 268
          Length = 46

 Score = 32.3 bits (72), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           EKP +C +C K+F   + L  H RTH  +K
Sbjct: 10  EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39



 Score = 28.1 bits (61), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           E+P +C  C KAF   S L  H R H  +K
Sbjct: 10  EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39



 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           EKP +C  C + F   S +  H RTH  ++
Sbjct: 10  EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39


>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
           Hyperthermophilic Archaeal Virus In The Absence Of Dna
 pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
           Hyperthermophilic Archaeal Virus In The Absence Of Dna
          Length = 129

 Score = 32.3 bits (72), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 172 FRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHL 219
           F CP+C   FS S S+  H+R    E    C +CKK F+ + +   H+
Sbjct: 75  FVCPLCLMPFSSSVSLKQHIRY--TEHTKVCPVCKKEFTSTDSALDHV 120


>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           425- 457) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 32.0 bits (71), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           E+PY C +C K+F + ++L  H++ H  EK
Sbjct: 10  ERPYGCNECGKNFGRHSHLIEHLKRHFREK 39



 Score = 30.8 bits (68), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 17/30 (56%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           ERPY C  C K F   S L +HL+ H  EK
Sbjct: 10  ERPYGCNECGKNFGRHSHLIEHLKRHFREK 39


>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 36

 Score = 32.0 bits (71), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           S  K + CE CNK F    +L AH+R H+ EK
Sbjct: 5   SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36



 Score = 30.0 bits (66), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           S  + + C  C K F    +L  HLRIH+ EK
Sbjct: 5   SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36


>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           557- 589) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 32.0 bits (71), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHS 223
           E+ ++C  C+K FS S  LT+H RIH+
Sbjct: 10  EKCFKCNKCEKTFSCSKYLTQHERIHT 36



 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHS 167
           EK ++C  C K+FS +  LT H R H+
Sbjct: 10  EKCFKCNKCEKTFSCSKYLTQHERIHT 36



 Score = 28.5 bits (62), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHS 195
           EK F+C  C++ FS S  +T H R H+
Sbjct: 10  EKCFKCNKCEKTFSCSKYLTQHERIHT 36


>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
           Zinc Finger Protein
          Length = 28

 Score = 32.0 bits (71), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSG 196
           +P+ C +C +RFS    + TH R H+G
Sbjct: 2   RPYSCSVCGKRFSLKHQMETHYRVHTG 28



 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSG 224
           RPY C +C K FS    +  H R+H+G
Sbjct: 2   RPYSCSVCGKRFSLKHQMETHYRVHTG 28



 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSG 168
           +PY C  C K FS    +  H R H+G
Sbjct: 2   RPYSCSVCGKRFSLKHQMETHYRVHTG 28


>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
           Protein 32
          Length = 42

 Score = 32.0 bits (71), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
           E PY C  C KSF+Q  +L  H R+ S   P
Sbjct: 9   ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39


>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
           Zinc Finger Protein
          Length = 27

 Score = 31.6 bits (70), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTH 194
           EKPF C +C +R    S++T H+RTH
Sbjct: 1   EKPFSCSLCPQRSRDFSAMTKHLRTH 26



 Score = 31.6 bits (70), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIH 222
           E+P+ C LC +   D S +TKHLR H
Sbjct: 1   EKPFSCSLCPQRSRDFSAMTKHLRTH 26



 Score = 28.9 bits (63), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVHG 251
           EKP+ C LC  R      + +H+R HG
Sbjct: 1   EKPFSCSLCPQRSRDFSAMTKHLRTHG 27


>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
          Length = 30

 Score = 31.6 bits (70), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           +PY+C  C ++FSD ++  +HL  H  +K
Sbjct: 2   KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30



 Score = 30.8 bits (68), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           KPY+C+ C +SFS   +   H+ TH  +K
Sbjct: 2   KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30



 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           KP++C  C R FS  +S   H+ TH  ++
Sbjct: 2   KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30


>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
          Length = 29

 Score = 31.6 bits (70), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTH 166
           K ++C  C+K F+Q  NL AH++ H
Sbjct: 1   KEHKCPHCDKKFNQVGNLKAHLKIH 25



 Score = 29.6 bits (65), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTH 194
           K  +CP CD++F+Q  ++  H++ H
Sbjct: 1   KEHKCPHCDKKFNQVGNLKAHLKIH 25



 Score = 28.1 bits (61), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 226 KPYQCKLCLLRFSQSGNLNRHMRVH 250
           K ++C  C  +F+Q GNL  H+++H
Sbjct: 1   KEHKCPHCDKKFNQVGNLKAHLKIH 25


>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           171- 203) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 31.2 bits (69), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           EK + C++C K+F   + L  H R H GEK
Sbjct: 10  EKSHTCDECGKNFCYISALRIHQRVHMGEK 39


>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
           Protein Zfy: 2d Nmr Structure Of An Even Finger And
           Implications For "jumping-Linker" Dna Recognition
          Length = 30

 Score = 31.2 bits (69), Expect = 0.87,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRT-HSGEK 170
           K Y+C+ C K F+ ++NL  H++T HS EK
Sbjct: 1   KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30



 Score = 30.4 bits (67), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRT-HSGER 198
           K ++C  C++RF+ SS++ TH++T HS E+
Sbjct: 1   KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30



 Score = 30.4 bits (67), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRI-HSGEK 226
           + Y+C+ C+K F+DSS L  H++  HS EK
Sbjct: 1   KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30



 Score = 28.5 bits (62), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 226 KPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           K YQC+ C  RF+ S NL  H++   S+
Sbjct: 1   KTYQCQYCEKRFADSSNLKTHIKTKHSK 28


>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
           Domain (Zinc Finger 3)
 pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
           Factor Sp1f3, Minimized Average Structure
          Length = 29

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           K F CP C +RF +S  ++ H++TH  ++
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTHQNKK 29



 Score = 27.7 bits (60), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           K + C +C K F ++ +L+ H++TH  +K
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTHQNKK 29


>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
           Finger Dna-Binding Domain
          Length = 27

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 18/23 (78%)

Query: 200 YRCRLCKKAFSDSSTLTKHLRIH 222
           Y+C LC+++F + S L++H R+H
Sbjct: 2   YKCGLCERSFVEKSALSRHQRVH 24



 Score = 27.3 bits (59), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 16/23 (69%)

Query: 172 FRCPICDRRFSQSSSVTTHMRTH 194
           ++C +C+R F + S+++ H R H
Sbjct: 2   YKCGLCERSFVEKSALSRHQRVH 24


>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
           Factor Sp1f2, Minimized Average Structure
 pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
           Domain (Zinc Finger 2)
          Length = 31

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 170 KPFRCP--ICDRRFSQSSSVTTHMRTHSGER 198
           +PF C    C +RF++S  +  H RTH+GE+
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31



 Score = 28.9 bits (63), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 198 RPYRCRL--CKKAFSDSSTLTKHLRIHSGEK 226
           RP+ C    C K F+ S  L +H R H+GEK
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31



 Score = 28.5 bits (62), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 142 KPYRC--EDCNKSFSQAANLTAHVRTHSGEK 170
           +P+ C    C K F+++  L  H RTH+GEK
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31


>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
           Bklf
          Length = 35

 Score = 30.0 bits (66), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 167 SGEKPFRC--PICDRRFSQSSSVTTHMRTH 194
           +G KPF+C  P CDR FS+S  +  H + H
Sbjct: 3   TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32



 Score = 28.9 bits (63), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)

Query: 139 SGEKPYRCE--DCNKSFSQAANLTAHVRTH 166
           +G KP++C   DC++SFS++ +L  H + H
Sbjct: 3   TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32


>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
           With Galactose
 pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
 pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
           With 1- Deoxygalactonojirimycin
          Length = 654

 Score = 30.0 bits (66), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 20/45 (44%)

Query: 250 HGSQYNMLPVIYMGVNQVCSNIVDQRRGIYVVEAVWTVQSTWIDG 294
           H S    LP  YMG   + S I D  +  ++    WT    WI+G
Sbjct: 518 HNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWING 562


>pdb|2ELW|A Chain A, Solution Structure Of The 5th C2h2 Zinc Finger Of Mouse
           Zinc Finger Protein 406
          Length = 37

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 202 CRLCKKAFSDSSTLTKHLR 220
           CR CKK +SD   L KH+R
Sbjct: 12  CRFCKKKYSDVKNLIKHIR 30


>pdb|2ELU|A Chain A, Solution Structure Of The 5th C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 37

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 202 CRLCKKAFSDSSTLTKHLR 220
           CR CKK +SD   L KH+R
Sbjct: 12  CRFCKKKYSDVKNLIKHIR 30


>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
           Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
           Tryptophan Residue In The Zinc Finger Domain
          Length = 95

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 9/59 (15%)

Query: 177 CDRRFSQSSSVTTHMR-THSGERPYRCRLC--------KKAFSDSSTLTKHLRIHSGEK 226
           CDR FS    + TH+   H G       +C         K+F     L  H+R+H+GEK
Sbjct: 31  CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89


>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
           Zinc Finger From A Human Enhancer Binding Protein In
           Solution
 pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
           Zinc Finger From A Human Enhancer Binding Protein In
           Solution
          Length = 30

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           +PY C  CN SF    NLT H+++ +  K
Sbjct: 1   RPYHCSYCNFSFKTKGNLTKHMKSKAHSK 29



 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 226 KPYQCKLCLLRFSQSGNLNRHMR 248
           +PY C  C   F   GNL +HM+
Sbjct: 1   RPYHCSYCNFSFKTKGNLTKHMK 23


>pdb|2ELX|A Chain A, Solution Structure Of The 8th C2h2 Zinc Finger Of Mouse
           Zinc Finger Protein 406
          Length = 35

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMR-VHGS 252
           SG   Y C LCL +F  S  L  H+R VHG+
Sbjct: 3   SGSSGYVCALCLKKFVSSIRLRSHIREVHGA 33


>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 36

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGER 198
           KPF+C +C+      S++  HM  HS E+
Sbjct: 8   KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36



 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           +P++C LC+ A    S L  H+  HS EK
Sbjct: 8   KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36



 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           KP++C  C  +    +NL AH+  HS EK
Sbjct: 8   KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36


>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
          Length = 30

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 226 KPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
           K YQC+ C LR + S NL  H++   S+
Sbjct: 1   KTYQCQYCELRSADSSNLKTHIKTKHSK 28



 Score = 27.7 bits (60), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRT-HSGER 198
           K ++C  C+ R + SS++ TH++T HS E+
Sbjct: 1   KTYQCQYCELRSADSSNLKTHIKTKHSKEK 30


>pdb|2KFQ|A Chain A, Nmr Structure Of Fp1
          Length = 32

 Score = 28.9 bits (63), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 172 FRCPICDRRFSQSSSVTTHMRT 193
           F CP C +RF +S +++ H++T
Sbjct: 3   FACPACPKRFMRSDALSKHIKT 24


>pdb|2ELV|A Chain A, Solution Structure Of The 6th C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 36

 Score = 28.9 bits (63), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 228 YQCKLCLLRFSQSGNLNRHMRVHGSQY 254
           Y C +C  +F    + +RHM VHG ++
Sbjct: 10  YDCHICERKFKNELDRDRHMLVHGDKW 36


>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
           Domain (Zinc Finger 1)
          Length = 37

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 122 GKTYARPSTLKTHLRTHSGEK 142
           GK Y + S L+ HLR H+GE+
Sbjct: 17  GKVYGKTSHLRAHLRWHTGER 37


>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
           Substituted For The Central Aromatic Residue
          Length = 30

 Score = 28.5 bits (62), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRT-HSGER 198
           K ++C  C+ R + SS++ TH++T HS E+
Sbjct: 1   KTYQCQYCEXRSADSSNLKTHIKTKHSKEK 30


>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
           Protein Zfy: 2d Nmr Structure Of An Even Finger And
           Implications For "jumping-Linker" Dna Recognition
          Length = 30

 Score = 28.1 bits (61), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 170 KPFRCPICDRRFSQSSSVTTHMRT-HSGER 198
           K ++C  C+ R + SS++ TH++T HS E+
Sbjct: 1   KTYQCQYCEYRSADSSNLKTHIKTKHSKEK 30


>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 28.1 bits (61), Expect = 7.1,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 172 FRCPICDRRFSQSSSVTTHMRTHSGER 198
           F C +C R F++  ++  H R+H+ E+
Sbjct: 3   FVCEVCTRAFARQEALKRHYRSHTNEK 29



 Score = 27.7 bits (60), Expect = 7.7,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 200 YRCRLCKKAFSDSSTLTKHLRIHSGEK 226
           + C +C +AF+    L +H R H+ EK
Sbjct: 3   FVCEVCTRAFARQEALKRHYRSHTNEK 29


>pdb|1X6F|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Zinc Finger Protein 462
          Length = 88

 Score = 28.1 bits (61), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 144 YRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRR 180
           Y+C+ C+      A LT+H+  H+ E   R    +RR
Sbjct: 26  YQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERR 62


>pdb|2KVG|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
           Zinc Finger Protein
          Length = 27

 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 171 PFRCPICDRRFSQSSSVTTHMRTHS 195
           P+RCP+C       +S+  HMR HS
Sbjct: 3   PYRCPLCRAGCPSLASMQAHMRGHS 27


>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 27.7 bits (60), Expect = 9.6,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 144 YRCEDCNKSFSQAANLTAHVRTHSGEK 170
           + CE C ++F++  +L  H R+H+ EK
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEK 29


>pdb|2YSO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           656- 688) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 27.3 bits (59), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
           EK ++C +C + F Q  +L  H   H G+K
Sbjct: 10  EKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,070,576
Number of Sequences: 62578
Number of extensions: 371314
Number of successful extensions: 1945
Number of sequences better than 100.0: 206
Number of HSP's better than 100.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 923
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)