RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8050
(311 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 189 bits (484), Expect = 2e-60
Identities = 68/129 (52%), Positives = 86/129 (66%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
GK+++ L H RTH+GEKPY+C +C KSFSQ ANL AH RTH+GEKP+ CP C + F
Sbjct: 56 GKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSF 115
Query: 182 SQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSG 241
SQ + + H RTH+GE+PY+C C K+FS L H R H+GEKPY+C C FS+
Sbjct: 116 SQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRD 175
Query: 242 NLNRHMRVH 250
LN H R H
Sbjct: 176 ALNVHQRTH 184
Score = 188 bits (479), Expect = 1e-59
Identities = 66/129 (51%), Positives = 88/129 (68%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
GK+++R L H RTH+GEKPY+C +C KSFS +LT H RTH+GEKP++CP C + F
Sbjct: 28 GKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSF 87
Query: 182 SQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSG 241
SQ +++ H RTH+GE+PY C C K+FS + L H R H+GEKPY+C C FS+
Sbjct: 88 SQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRED 147
Query: 242 NLNRHMRVH 250
NL+ H R H
Sbjct: 148 NLHTHQRTH 156
Score = 184 bits (470), Expect = 3e-58
Identities = 58/127 (45%), Positives = 76/127 (59%)
Query: 124 TYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQ 183
+ S+ GEKPY C +C KSFS++ +L H RTH+GEKP++CP C + FS
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 184 SSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNL 243
+T H RTH+GE+PY+C C K+FS + L H R H+GEKPY C C FSQ +L
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 244 NRHMRVH 250
H R H
Sbjct: 122 RAHQRTH 128
Score = 160 bits (408), Expect = 5e-49
Identities = 55/106 (51%), Positives = 77/106 (72%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
GK++++ + L+ H RTH+GEKPY C +C KSFSQ A+L AH RTH+GEKP++CP C + F
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF 143
Query: 182 SQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
S+ ++ TH RTH+GE+PY+C C K+FS L H R H+G+K
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 181 bits (462), Expect = 1e-57
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 122 GKTYARPSTLKTHL---RTHSGEKPYRCEDCN-----KSFSQAANLTAHVRTHSGEKPFR 173
+ + L H+ H K + C + F L H+R H+GEKP +
Sbjct: 10 SQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHK 69
Query: 174 CPI--CDRRFSQSSSVTTHMRTHSGERPYRC--RLCKKAFSDSSTLTKH-LRIHSGEKPY 228
C C + +S+ ++ TH+R+H+GE+PY C C KAFS++S KH R HS EKPY
Sbjct: 70 CTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPY 129
Query: 229 QCKL--CLLRFSQSGNLNRHMRVH 250
CKL C R++ +L +H++
Sbjct: 130 VCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 156 bits (396), Expect = 1e-47
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 141 EKPYRCEDCNKSFSQAANLTAHV---RTHSGEKPFRCPICD-----RRFSQSSSVTTHMR 192
E R + C++ F L H+ H K F C R F + HMR
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 193 THSGERPYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQCK--LCLLRFSQSGNLNRHM- 247
H+GE+P++C C+K++S L HLR H+GEKPY C+ C FS + + +H
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 248 RVH 250
R H
Sbjct: 121 RTH 123
Score = 153 bits (388), Expect = 2e-46
Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRC--PIC 177
+ + L H+R H+GEKP++C E C KS+S+ NL H+R+H+GEKP+ C C
Sbjct: 46 LRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGC 105
Query: 178 DRRFSQSSSVTTHM-RTHSGERPYRCRL--CKKAFSDSSTLTKHLRIHSG 224
+ FS +S H RTHS E+PY C+L C K ++D S+L KH++ G
Sbjct: 106 SKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 177 bits (452), Expect = 1e-56
Identities = 47/118 (39%), Positives = 74/118 (62%), Gaps = 6/118 (5%)
Query: 139 SGEKPYRCE--DCNKSFSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSSVTTHMRTH 194
S ++P+ C CNK + + ++L H R H+GEKP++C C+RRFS+S + H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKL--CLLRFSQSGNLNRHMRVH 250
+G +P++C+ C++ FS S L H R H+GEKP+ C+ C +F++S L RH +H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 159 bits (406), Expect = 1e-49
Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 4/105 (3%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE--DCNKSFSQAANLTAHVRTHSGEKPFRCPICDR 179
K Y + S L+ H R H+GEKPY+C+ DC + FS++ L H R H+G KPF+C C R
Sbjct: 15 NKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQR 74
Query: 180 RFSQSSSVTTHMRTHSGERPYRCRL--CKKAFSDSSTLTKHLRIH 222
+FS+S + TH RTH+GE+P+ CR C+K F+ S L +H +H
Sbjct: 75 KFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 176 bits (449), Expect = 4e-55
Identities = 50/139 (35%), Positives = 68/139 (48%), Gaps = 10/139 (7%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE--DCNKSFSQAANLTAHVRTHSGEKPFRC--PIC 177
G Y + L+ HL H+GEKP+ C+ C K F+ +LT H TH+GEK F C C
Sbjct: 21 GAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGC 80
Query: 178 DRRFSQSSSVTTHMRTHSGER--PYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQCK-- 231
D RF+ +++ H + Y C C KAF + L H H+ + PY+C
Sbjct: 81 DLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHE 140
Query: 232 LCLLRFSQSGNLNRHMRVH 250
C RFS L RH +VH
Sbjct: 141 GCDKRFSLPSRLKRHEKVH 159
Score = 161 bits (409), Expect = 4e-49
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 134 HLRTHSGEKPYRCE--DCNKSFSQAANLTAHVRTHSGEKPFRC--PICDRRFSQSSSVTT 189
K Y C DC ++++ L AH+ H+GEKPF C C++ F+ +T
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 190 HMRTHSGERPYRC--RLCKKAFSDSSTLTKHLRIHSGEK--PYQCKL--CLLRFSQSGNL 243
H TH+GE+ + C C F+ + + KH K Y C C F + L
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL 122
Query: 244 NRHMRVH 250
H H
Sbjct: 123 KVHQFSH 129
Score = 156 bits (397), Expect = 3e-47
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCED--CNKSFSQAANLTAHVRTHSGEK--PFRCPI- 176
K + L H TH+GEK + C+ C+ F+ AN+ H K + C
Sbjct: 51 EKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFE 110
Query: 177 -CDRRFSQSSSVTTHMRTHSGERPYRC--RLCKKAFSDSSTLTKHLRIHSG---EKPYQC 230
C + F + + + H +H+ + PY C C K FS S L +H ++H+G +K C
Sbjct: 111 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 170
Query: 231 KLCLLRFSQSGNLNRHMRVH 250
++ L H
Sbjct: 171 SFVGKTWTLY--LKHVAECH 188
Score = 126 bits (319), Expect = 8e-36
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 161 AHVRTHSGEKPFRC--PICDRRFSQSSSVTTHMRTHSGERPYRC--RLCKKAFSDSSTLT 216
K + C C ++++ + H+ H+GE+P+ C C+K F+ LT
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 217 KHLRIHSGEKPYQCK--LCLLRFSQSGNLNRHMRVH 250
+H H+GEK + C C LRF+ N+ +H
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 171 bits (435), Expect = 1e-53
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFR-------- 173
G + + + + C+++FS L HV P +
Sbjct: 4 GSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE 63
Query: 174 -CPICDRRFSQSSSVTTHMRTHSGERPYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQC 230
CP + F + H+R H+GE+P+ C C K F+ S L H R H+GEKP++C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 231 KL--CLLRFSQSGNLNRHMRVH 250
+ C RF+ S + +HM VH
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 160 bits (406), Expect = 4e-49
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYR---------CEDCNKSFSQAANLTAHVRTHSGEKPF 172
+T++ L TH+ P + C KSF L H+R H+GEKPF
Sbjct: 32 DRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPF 91
Query: 173 RCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRL--CKKAFSDSSTLTKHLRIHSGEKPY 228
CP C + F++S ++ H RTH+GE+P++C C + F++SS KH+ +H+ +K
Sbjct: 92 PCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSG 151
Query: 229 QC 230
Sbjct: 152 PS 153
Score = 90.8 bits (226), Expect = 1e-22
Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 9/83 (10%)
Query: 177 CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQ------- 229
+ + + C + FS L H+ + P Q
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 230 --CKLCLLRFSQSGNLNRHMRVH 250
C F L H+RVH
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVH 85
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 166 bits (423), Expect = 5e-52
Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPI--CDR 179
K + S ++ HL TH G + + C +C K+F +++ L H H+GEKPF+C C +
Sbjct: 14 TKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 180 RFSQSSSVTTHMRTHSGERPYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQ 229
RFS ++ TH+R H+G+RPY C C K F+ S+ L H+ H+ K Q
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 161 bits (410), Expect = 3e-50
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 141 EKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
+ C + C K F + + H+ TH G + C C + F +SS + H H+GE+
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 199 PYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQCKL--CLLRFSQSGNLNRHMRVH 250
P++C C K FS L H+RIH+G++PY C C +F+QS NL H+ H
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 41.0 bits (97), Expect = 6e-05
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 225 EKPYQC--KLCLLRFSQSGNLNRHMRVHG 251
+ C K C F + + +H+ HG
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHG 31
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 165 bits (421), Expect = 5e-52
Identities = 31/102 (30%), Positives = 49/102 (48%)
Query: 129 STLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVT 188
S +K + C+ C + F+++ NL H RTH+ E+P+ C IC + F + +
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
H HS E+P++C+ C K F S TL H +H
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 140 bits (356), Expect = 2e-42
Identities = 36/93 (38%), Positives = 48/93 (51%)
Query: 158 NLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTK 217
+ +K F C C R F++S ++ H RTH+ ERPY C +C KAF L
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
H IHS EKP++C+ C F QS L H +H
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 122 bits (309), Expect = 2e-35
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
G+ + + L H RTH+ E+PY C+ C+K+F + +L H HS EKPF+C C + F
Sbjct: 24 GRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGF 83
Query: 182 SQSSSVTTHMRTHSGERPYRC 202
QS ++ H H
Sbjct: 84 CQSRTLAVHKTLHMQTSSPTA 104
Score = 103 bits (260), Expect = 5e-28
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 184 SSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNL 243
SS + ++ + C+ C + F+ S L H R H+ E+PY C +C F + +L
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 244 NRHMRVH 250
H +H
Sbjct: 62 RDHRYIH 68
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 162 bits (414), Expect = 4e-51
Identities = 39/94 (41%), Positives = 57/94 (60%)
Query: 137 THSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSG 196
+ P++CE C K FS+ L H+R H+G KP++C CD + SSS+ H+R HS
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
ERP++C++C A +SS LT HLR H+G+
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 140 bits (355), Expect = 3e-42
Identities = 36/86 (41%), Positives = 54/86 (62%)
Query: 165 THSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSG 224
+ P +C +C + FS+ + THMR H+G +PY+C+ C A +DSS+L KHLRIHS
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVH 250
E+P++C++C S L H+R H
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 132 bits (334), Expect = 4e-39
Identities = 33/81 (40%), Positives = 53/81 (65%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
GK ++R LKTH+R H+G KPY+C+ C+ + + +++L H+R HS E+PF+C IC
Sbjct: 15 GKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYAS 74
Query: 182 SQSSSVTTHMRTHSGERPYRC 202
SS +T H+R+H+G+
Sbjct: 75 RNSSQLTVHLRSHTGDSGPSS 95
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 163 bits (416), Expect = 5e-51
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 138 HSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMR---TH 194
SG C C+K F L H R H+GEKPF CP C + + + ++ H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHM-RVH 250
E+ + C +C++ F L H+ H+GE PY+C C +F Q +L HM ++H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 147 bits (374), Expect = 1e-44
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVR---THSGEKPFRCPICD 178
K + LK H R H+GEKP+ C C K + + NL H + E+ F C +C
Sbjct: 14 HKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQ 73
Query: 179 RRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKH-LRIHSGEK 226
F + + HM +H+GE PY+C C + F L H +++HSG
Sbjct: 74 ETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 86.4 bits (215), Expect = 3e-21
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 194 HSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHG 251
SG C C K F L H R H+GEKP++C C + + NL H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC 59
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 158 bits (402), Expect = 4e-49
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 136 RTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHS 195
SG+K Y C+ C KSF+ + H+ H G +P+ C +C ++F + HM+ H+
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 196 GERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLN 244
G +PY C +C K F + H + S K Y+ +++ +
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 132 bits (335), Expect = 4e-39
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
GK++ S H+ H G +PY C C K F +L H++ H+G KP+ C IC +RF
Sbjct: 16 GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75
Query: 182 SQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLT 216
S H S + Y ++ +++S +
Sbjct: 76 MWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 123 bits (312), Expect = 1e-35
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 164 RTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHS 223
SG+K + C C + F+ S HM H G RPY C +C K F L H++IH+
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 224 GEKPYQCKLCLLRFSQSGNLNRHMRVH 250
G KPY+C +C RF + H V
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVT 86
Score = 93.7 bits (234), Expect = 3e-24
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 191 MRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SG++ Y C+ C K+F+ S +H+ +H G +PY C +C +F +L HM++H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 88.7 bits (221), Expect = 2e-22
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
GK + L H++ H+G KPY C C K F + H S K + ++
Sbjct: 44 GKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNT 101
Query: 182 SQSSSVTT 189
+++S ++
Sbjct: 102 TEASGPSS 109
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 147 bits (374), Expect = 3e-45
Identities = 42/88 (47%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
Query: 141 EKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
E+PY C E C++ FSQ+ +LT H+R H+G+KPF+C IC R FS+S +TTH+RTH+GE+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 199 PYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
P+ C +C + F+ S +H +IH +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 137 bits (349), Expect = 2e-41
Identities = 41/84 (48%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
Query: 169 EKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
E+P+ CP+ CDRRFSQS S+T H+R H+G++P++CR+C + FS S LT H+R H+GEK
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 227 PYQCKLCLLRFSQSGNLNRHMRVH 250
P+ C +C +F++S RH ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 127 bits (323), Expect = 2e-37
Identities = 30/77 (38%), Positives = 53/77 (68%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
+ +++ +L H+R H+G+KP++C C ++FS++ +LT H+RTH+GEKPF C IC R+F
Sbjct: 13 DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72
Query: 182 SQSSSVTTHMRTHSGER 198
++S H + H ++
Sbjct: 73 ARSDERKRHTKIHLRQK 89
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 140 bits (356), Expect = 2e-42
Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 138 HSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
SG CE C K F +L H +HSGEKP+ CP+C RF + ++ H+R+H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 198 --RPYRCRLCKKAFSDSSTLTKHL-RIHSGEK 226
+PY C+ C K FS L H+ ++HSG
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 124 bits (314), Expect = 3e-36
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 166 HSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
SG C IC + F + H +HSGE+PY C +C F ++ H+R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 226 --KPYQCKLCLLRFSQSGNLNRHM-RVH 250
KPY C+ C FS+ +LN H+ +VH
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 107 bits (270), Expect = 1e-29
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGE--KPFRCPICDR 179
GK + L H +HSGEKPY C C F + ++ HVR+H G KP+ C C +
Sbjct: 14 GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK 73
Query: 180 RFSQSSSVTTHM-RTHSGER 198
FS+ + H+ + HSG
Sbjct: 74 GFSRPDHLNGHIKQVHSGPS 93
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 134 bits (341), Expect = 3e-40
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYR 201
KP++C C ++FS++ +LT H+RTH+GEKPF C IC R+F++S H P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPIL 60
Query: 202 CRLCKKAFSDSSTLTKH---LRIHSGEK 226
++ S + L L+ GE+
Sbjct: 61 EDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 120 bits (303), Expect = 1e-34
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQ 229
KPF+C IC R FS+S +TTH+RTH+GE+P+ C +C + F+ S +H I P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPIL 60
Query: 230 CKLCLLRFSQSGNL---NRHMRVH 250
S++ +L ++
Sbjct: 61 EDKVEELLSKNYHLENEVARLKKL 84
Score = 113 bits (285), Expect = 5e-32
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
+ ++R L TH+RTH+GEKP+ C+ C + F+++ H P +
Sbjct: 10 MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILEDKVEELL 68
Query: 182 SQSSSVTTH---MRTHSGER 198
S++ + ++ GER
Sbjct: 69 SKNYHLENEVARLKKLVGER 88
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 128 bits (323), Expect = 1e-37
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 138 HSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC--PICDRRFSQSSSVTTHMRTHS 195
+ C K+++++++L AH+RTH+GEKP+ C C +F++S +T H R H+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 196 GERPYRCRLCKKAFSDSSTLTKHLRIH 222
G RP++C+ C +AFS S L H++ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 121 bits (306), Expect = 5e-35
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 166 HSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRL--CKKAFSDSSTLTKHLRIHS 223
+ C + +++SS + H+RTH+GE+PY C C F+ S LT+H R H+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 224 GEKPYQCKLCLLRFSQSGNLNRHMRVH 250
G +P+QC+ C FS+S +L HM+ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 115 bits (291), Expect = 7e-33
Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDR 179
GKTY + S LK HLRTH+GEKPY C + C F+++ LT H R H+G +PF+C CDR
Sbjct: 14 GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDR 73
Query: 180 RFSQSSSVTTHMRTH 194
FS+S + HM+ H
Sbjct: 74 AFSRSDHLALHMKRH 88
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 128 bits (323), Expect = 1e-37
Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 6/101 (5%)
Query: 124 TYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC--PICDRRF 181
+ R H + P C K ++++++L AH+RTH+GEKP++C CD RF
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 182 SQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIH 222
++S +T H R H+G +P++C +C ++FS S L H++ H
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 124 bits (314), Expect = 4e-36
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 152 SFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRL--CKKAF 209
S + R H + P C + +++SS + H+RTH+GE+PY+C C F
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 210 SDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+ S LT+H R H+G KP+QC +C FS+S +L HM+ H
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 117 bits (296), Expect = 2e-33
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDR 179
K Y + S LK HLRTH+GEKPY+C E C+ F+++ LT H R H+G KPF+C +C+R
Sbjct: 24 TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNR 83
Query: 180 RFSQSSSVTTHMRTH 194
FS+S + HM+ H
Sbjct: 84 SFSRSDHLALHMKRH 98
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 124 bits (314), Expect = 2e-36
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 144 YRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCR 203
+ C+ C KSF +++ L+ H+ HS +P+ C C +RF Q S + H H+GE+P++C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 204 LCKKAFSDSSTLTKHLRIHSG 224
+C KAFS SS L H R H+G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 117 bits (297), Expect = 9e-34
Identities = 38/79 (48%), Positives = 51/79 (64%)
Query: 172 FRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCK 231
F C IC + F +SS+++TH+ HS RPY C+ C K F S + KH IH+GEKP++C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 232 LCLLRFSQSGNLNRHMRVH 250
+C FSQS NL H R H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 113 bits (286), Expect = 3e-32
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRF 181
GK++ R STL THL HS +PY C+ C K F Q +++ H H+GEKP +C +C + F
Sbjct: 8 GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAF 67
Query: 182 SQSSSVTTHMRTHSG 196
SQSS++ TH R H+G
Sbjct: 68 SQSSNLITHSRKHTG 82
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 120 bits (303), Expect = 8e-35
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 130 TLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGE--KPFRCPICDRRFSQSSSV 187
+ + RTHSGEKPY C C+ F+Q+ + H+ E F CP CD ++ S +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 188 TTHMRT-HSGERPY 200
H+R HS P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 115 bits (291), Expect = 4e-33
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 158 NLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGE--RPYRCRLCKKAFSDSSTL 215
+ + RTHSGEKP+ C IC RF+QS ++ H+ E + C C + S L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 216 TKHLR-IHSGEKPY 228
HLR HS P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 98.4 bits (246), Expect = 2e-26
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 186 SVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGE--KPYQCKLCLLRFSQSGNL 243
S + RTHSGE+PY C +C F+ S T+ H+ E + C C ++ +L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 244 NRHMR 248
H+R
Sbjct: 62 GVHLR 66
Score = 75.6 bits (187), Expect = 7e-18
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 122 GKTYARPSTLKTHLRTHSGE--KPYRCEDCNKSFSQAANLTAHVRT-HSGEKPF 172
+ + T+K H+ E + C C+ ++ ++L H+R HS P
Sbjct: 22 HARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 116 bits (294), Expect = 2e-33
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 130 TLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGE----KPFRCPICDRRFSQSS 185
+ + RTH+GEKPY C C+K+F Q L H + + F C C + F++ +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 186 SVTTHMRTHSGERPYRCRLCKKAF 209
++ H +G +
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 115 bits (291), Expect = 7e-33
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 158 NLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGE----RPYRCRLCKKAFSDSS 213
+ + RTH+GEKP+ C CD+ F Q + H + + + C C K F+ +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 214 TLTKHLRIHSGEKPYQCKLC 233
T+ +H +G + +
Sbjct: 62 TMARHADNCAGPDGVEGENS 81
Score = 93.4 bits (233), Expect = 2e-24
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 186 SVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGE----KPYQCKLCLLRFSQSG 241
S + RTH+GE+PY C C K F L H + + + C C F++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 242 NLNRHMRVH 250
+ RH
Sbjct: 62 TMARHADNC 70
Score = 79.5 bits (197), Expect = 4e-19
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 122 GKTYARPSTLKTHLRTHSGE----KPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPIC 177
KT+ + L H + + + C C K+F++ + H +G
Sbjct: 22 DKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Query: 178 DRRF 181
Sbjct: 82 GPSS 85
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 116 bits (293), Expect = 3e-33
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 129 STLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVT 188
H +KPY+C+ C SF NL +H H+GEKP+RC IC +F++ +++
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 189 THMRTHSGERPY 200
TH R HSGE+PY
Sbjct: 63 THTRIHSGEKPY 74
Score = 113 bits (286), Expect = 3e-32
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 158 NLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTK 217
+ H +KP++C C F ++ +H H+GE+PYRC +C F+ + L
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 218 HLRIHSGEKPY 228
H RIHSGEKPY
Sbjct: 64 HTRIHSGEKPY 74
Score = 102 bits (258), Expect = 3e-28
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 184 SSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNL 243
H ++PY+C C+ +F L H +H+GEKPY+C +C +F++ NL
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 244 NRHMRVH 250
H R+H
Sbjct: 62 KTHTRIH 68
Score = 82.1 bits (204), Expect = 3e-20
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPF 172
++ L +H H+GEKPYRC C F++ ANL H R HSGEKP+
Sbjct: 24 QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 112 bits (284), Expect = 5e-32
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 155 QAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSST 214
+ + + ++C C + FS SS ++ H RTH+GE+PY+C C KAF S
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 215 LTKHLRIHSGEKPY 228
L H R+H+G P
Sbjct: 62 LIGHHRVHTGSGPS 75
Score = 110 bits (277), Expect = 6e-31
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 129 STLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVT 188
+ + Y+C++C KSFS +++L+ H RTH+GEKP++C C + F Q S +
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI 63
Query: 189 THMRTHSGERPY 200
H R H+G P
Sbjct: 64 GHHRVHTGSGPS 75
Score = 103 bits (260), Expect = 2e-28
Identities = 30/68 (44%), Positives = 36/68 (52%)
Query: 183 QSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGN 242
S S R Y+C C K+FS SS L+KH R H+GEKPY+C C F Q +
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 243 LNRHMRVH 250
L H RVH
Sbjct: 62 LIGHHRVH 69
Score = 79.0 bits (196), Expect = 5e-19
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPF 172
GK+++ S L H RTH+GEKPY+C++C K+F Q ++L H R H+G P
Sbjct: 25 GKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 110 bits (278), Expect = 4e-31
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 159 LTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKH 218
+ HSGEKP+ C C + FS+SS + H R H+GE+PY+C C KAFS +S L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 219 LRIHSGEKPY 228
RIH+
Sbjct: 62 QRIHTSGPSS 71
Score = 106 bits (267), Expect = 2e-29
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 131 LKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTH 190
HSGEKPY C +C K+FS+++ L H R H+GEKP++C C + FSQ+S + H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 191 MRTHSGERPY 200
R H+
Sbjct: 62 QRIHTSGPSS 71
Score = 96.4 bits (241), Expect = 1e-25
Identities = 32/63 (50%), Positives = 40/63 (63%)
Query: 188 TTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHM 247
+ HSGE+PY C C KAFS SS L +H R+H+GEKPY+C C FSQ+ L H
Sbjct: 3 SGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Query: 248 RVH 250
R+H
Sbjct: 63 RIH 65
Score = 77.9 bits (193), Expect = 8e-19
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPF 172
GK ++R S L H R H+GEKPY+C +C K+FSQ + L H R H+
Sbjct: 21 GKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 56.7 bits (138), Expect = 5e-11
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 215 LTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+ IHSGEKPY C C FS+S L +H RVH
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH 37
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 110 bits (278), Expect = 5e-31
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 138 HSGEKPYRC--EDCNKSFSQAANLTAHVR-THSGEKPFRCP--ICDRRFSQSSSVTTHMR 192
SG C C + FS L H + H +K F CP C + F+ + HM+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 193 THSGERPYRCRLCKKAF 209
HS R Y C +
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 104 bits (262), Expect = 9e-29
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 166 HSGEKPFRCPI--CDRRFSQSSSVTTHMR-THSGERPYRC--RLCKKAFSDSSTLTKHLR 220
SG C C R FS + H + H ++ + C C K+F+ L +H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 221 IHSGEKPYQCKLC 233
+HS + Y C+
Sbjct: 62 LHSDTRDYICEFS 74
Score = 86.1 bits (214), Expect = 1e-21
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 122 GKTYARPSTLKTHLR-THSGEKPYRCE--DCNKSFSQAANLTAHVRTHSGEKPFRCPICD 178
G+ ++ L H + H +K + C C KSF+ +L H++ HS + + C
Sbjct: 16 GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSG 75
Query: 179 RRF 181
Sbjct: 76 PSS 78
Score = 80.7 bits (200), Expect = 9e-20
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 194 HSGERPYRCRL--CKKAFSDSSTLTKHLRI-HSGEKPYQCK--LCLLRFSQSGNLNRHMR 248
SG C C + FS+ L H + H +K + C C F+ +L HM+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 249 VH 250
+H
Sbjct: 62 LH 63
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 107 bits (269), Expect = 7e-30
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 164 RTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHS 223
+ S P +C C S +++ H R H +RP++C C S L+KH++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 224 GEKPYQC 230
G+
Sbjct: 62 GDMSGPS 68
Score = 104 bits (263), Expect = 6e-29
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 136 RTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHS 195
+ S P +C +C+ S S A L H R H ++PF+C C Q S+++ HM+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 196 GERPYRC 202
G+
Sbjct: 62 GDMSGPS 68
Score = 94.5 bits (236), Expect = 6e-25
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 192 RTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+ S P +C C + S + L H RIH ++P++C C Q NL++HM+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 79.1 bits (196), Expect = 3e-19
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCP 175
+ + + L+ H R H ++P++C C+ Q +NL+ H++ G+
Sbjct: 16 SYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 103 bits (260), Expect = 2e-28
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 144 YRC--EDCNKSFSQAANLTAHVRTHSGEKPFRC--PICDRRFSQSSSVTTHMRTHSGERP 199
Y C E+C K+F + L H +H+ + P+ C CD+RFS S + H + H+G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 200 YRCRLCKKAFSDSSTLTKHL-RIH 222
+ C + KH+ H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 97.3 bits (243), Expect = 7e-26
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDR 179
GK + + + LK H +H+ + PY C E C+K FS + L H + H+G + C
Sbjct: 10 GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSF 69
Query: 180 RFSQSSSVTTHM-RTH 194
+ H+ H
Sbjct: 70 VGKTWTLYLKHVAECH 85
Score = 91.9 bits (229), Expect = 7e-24
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 174 CPICDRRFSQSSSVTTHMRTHSGERPYRC--RLCKKAFSDSSTLTKHLRIHSGEKPYQCK 231
C + F + + + H +H+ + PY C C K FS S L +H ++H+G +
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65
Query: 232 LCLLRFSQSGNLNRHMR 248
C +H+
Sbjct: 66 SCSFVGKTWTLYLKHVA 82
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 103 bits (258), Expect = 3e-28
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 136 RTHSGEKPYRCEDCNKSFSQAANLTAHVRT--HSGEKPFRCPICDRRFSQSSSVTTHMRT 193
T GE YRC+ C++ ++ +N H T K + CP C + F++ ++T H++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 194 HSG 196
Sbjct: 63 IHK 65
Score = 96.9 bits (242), Expect = 7e-26
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 164 RTHSGEKPFRCPICDRRFSQSSSVTTHMRT--HSGERPYRCRLCKKAFSDSSTLTKHLRI 221
T GE +RC +C R ++ S+ H T + Y C C K F+ +T H++I
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 222 HSG 224
Sbjct: 63 IHK 65
Score = 94.9 bits (237), Expect = 3e-25
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 192 RTHSGERPYRCRLCKKAFSDSSTLTKHLRI--HSGEKPYQCKLCLLRFSQSGNLNRHMRV 249
T GE YRC++C + ++ S +H K Y C C F++ N+ H+++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 250 H 250
Sbjct: 63 I 63
Score = 69.9 bits (172), Expect = 6e-16
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 122 GKTYARPSTLKTHLRT--HSGEKPYRCEDCNKSFSQAANLTAHVRTHSG 168
+ Y S H T K Y C C K F++ N+TAHV+
Sbjct: 17 SRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 96.6 bits (241), Expect = 9e-26
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 127 RPSTLKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQS 184
+ L ++ +PY C E C++ FS++ LT H+R H+G+KPF+C IC R FS+S
Sbjct: 5 PMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS 62
Query: 185 SSVTTHMRTHS 195
+TTH+RTH+
Sbjct: 63 DHLTTHIRTHT 73
Score = 92.0 bits (229), Expect = 6e-24
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 153 FSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFS 210
NL +V +P+ CP+ CDRRFS+S +T H+R H+G++P++CR+C + FS
Sbjct: 3 PHPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 211 DSSTLTKHLRIHS 223
S LT H+R H+
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 87.0 bits (216), Expect = 4e-22
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 180 RFSQSSSVTTHMRTHSGERPYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRF 237
+++ ++ RPY C + C + FS S LT+H+RIH+G+KP+QC++C+ F
Sbjct: 2 EPHPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Query: 238 SQSGNLNRHMRVH 250
S+S +L H+R H
Sbjct: 60 SRSDHLTTHIRTH 72
Score = 66.9 bits (164), Expect = 9e-15
Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHS 167
+ ++R L H+R H+G+KP++C C ++FS++ +LT H+RTH+
Sbjct: 28 DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 95.2 bits (237), Expect = 4e-25
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 138 HSGEKPYRCEDCNKSFSQAANLTAHVRTHS---GEKPFRCPICDRRFSQSSSVTTHMRTH 194
SG +CE C + Q A+L H R H+ F C C +RF + SV H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 195 SGE-RPYRCRLCKKAF 209
+
Sbjct: 62 HPALLLAPQESSGPSS 77
Score = 89.8 bits (223), Expect = 4e-23
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 166 HSGEKPFRCPICDRRFSQSSSVTTHMRTHS---GERPYRCRLCKKAFSDSSTLTKHLRIH 222
SG +C IC Q +S+ H R H+ + C C K F ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 223 SGEKPYQCK 231
+
Sbjct: 62 HPALLLAPQ 70
Score = 82.8 bits (205), Expect = 2e-20
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 194 HSGERPYRCRLCKKAFSDSSTLTKHLRIHS---GEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SG +C +C ++L H R H+ + C+ C RF + ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 68.2 bits (167), Expect = 5e-15
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 122 GKTYARPSTLKTHLRTHS---GEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCP 175
G T + ++L H R H+ + CE C K F + ++ AH
Sbjct: 14 GFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70
Score = 32.8 bits (75), Expect = 0.022
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFS 154
GK + +P ++ H ++ + S
Sbjct: 45 GKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 86.4 bits (215), Expect = 5e-22
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHM-RTHSGE 197
+ + CE C ++F++ +L H R+H+ EKP+ C +C+R F++ + H + HSG
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 86.0 bits (214), Expect = 7e-22
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHL-RIHSGEK 226
+ F C +C R F++ + H R+H+ E+PY C LC +AF+ L +H +IHSG
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 75.6 bits (187), Expect = 4e-18
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHM-RVH 250
R + C +C +AF+ L +H R H+ EKPY C LC F++ L RH ++H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 70.2 bits (173), Expect = 4e-16
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHV-RTHSGEK 170
+ +AR LK H R+H+ EKPY C CN++F++ L H + HSG
Sbjct: 9 TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 83.2 bits (206), Expect = 9e-21
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 129 STLKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRC--PICDRRFSQS 184
S S + + C C K++ ++++L AH RTH+GEKPF C C+RRF++S
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 185 SSVTTHMRTH 194
++ H RTH
Sbjct: 63 DELSRHRRTH 72
Score = 78.6 bits (194), Expect = 5e-19
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 184 SSSVTTHMRTHSGERPYRCRL--CKKAFSDSSTLTKHLRIHSGEKPYQCKL--CLLRFSQ 239
SS + S R + C C K + SS L H R H+GEKP+ C C RF++
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 240 SGNLNRHMRVH 250
S L+RH R H
Sbjct: 62 SDELSRHRRTH 72
Score = 76.7 bits (189), Expect = 3e-18
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 156 AANLTAHVRTHSGEKPFRCPI--CDRRFSQSSSVTTHMRTHSGERPYRCRL--CKKAFSD 211
++ + S + C C + + +SS + H RTH+GE+P+ C C++ F+
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 212 SSTLTKHLRIH 222
S L++H R H
Sbjct: 62 SDELSRHRRTH 72
Score = 64.3 bits (157), Expect = 9e-14
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTH 166
GKTY + S LK H RTH+GEKP+ C + C + F+++ L+ H RTH
Sbjct: 26 GKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 82.9 bits (204), Expect = 5e-20
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 7/111 (6%)
Query: 126 ARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVR-----THSGEKPFRCPICDRR 180
+ S+ K + +G +RC+DC+ ++ LT H+ +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 181 FSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHL--RIHSGEKPYQ 229
+ S+ ++ +C C +F L+ H+ H +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 79.4 bits (195), Expect = 8e-19
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 5/100 (5%)
Query: 154 SQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMR-----THSGERPYRCRLCKKA 208
S ++ + +G FRC C + +T HM + +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 209 FSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMR 248
+L + +K +C C F +L+ HM
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 57.5 bits (138), Expect = 9e-11
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 182 SQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRI--HSGEKPYQCKLCLLRFSQ 239
S SS + +G +RC+ C A+ LT H+ H + ++ +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 240 SGNLNRHMRVHGSQ 253
+ + G +
Sbjct: 62 KPRKRSLLEMEGKE 75
Score = 55.2 bits (132), Expect = 6e-10
Identities = 12/87 (13%), Positives = 21/87 (24%), Gaps = 7/87 (8%)
Query: 122 GKTYARPSTLKTHLR-----THSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPI 176
Y L H+ + S + +L +K +C
Sbjct: 26 SAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMY 85
Query: 177 CDRRFSQSSSVTTHM--RTHSGERPYR 201
C F ++ HM H +
Sbjct: 86 CGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 40.5 bits (94), Expect = 8e-05
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 119 FIPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHV--RTHSGEKPFR 173
+ R +L +K +C C SF +L+ H+ H +
Sbjct: 56 NPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 77.6 bits (192), Expect = 7e-19
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHV-RTHSGEKPFRCPICDRRFSQ 183
+ + S KPY C+ C K FS+ +L H+ + H+ E+P +C + S
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 72.6 bits (179), Expect = 6e-17
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHM-RTHSGERPYRCRLCKKAFSD 211
+ + S KP+ C C + FS+ + H+ + H+ ERP++C++ S
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 72.2 bits (178), Expect = 7e-17
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHL-RIHSGEKPYQCKLCLLRFSQ 239
+ + S +PY C+ C K FS L H+ ++H+ E+P++C++ + S
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 53.0 bits (128), Expect = 7e-10
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 122 GKTYARPSTLKTHL-RTHSGEKPYRCEDCNKSFSQA 156
GK ++RP L H+ + H+ E+P++C+ S
Sbjct: 19 GKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG 54
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHM-RVH 250
S KPY C+ C FS+ +LN H+ +VH
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 77.2 bits (191), Expect = 1e-18
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+ Y C+ C K+FS + L KH R+HSGEKP
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 74.9 bits (185), Expect = 8e-18
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEK Y C++C KSFS+A L H R HSGEKP
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 64.9 bits (159), Expect = 3e-14
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEK + C C + FS++ + H R HSGE+P
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEK Y CK C FS++ L +H R+H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK+++R L H R HSGEKP
Sbjct: 19 GKSFSRAPCLLKHERLHSGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 76.1 bits (188), Expect = 2e-18
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCK 231
+ + +GE+PY C+ C K+F +S L KH R+HSGEKP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 73.0 bits (180), Expect = 3e-17
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY C++C KSF A+ L H R HSGEKP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 64.5 bits (158), Expect = 4e-14
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP+ C C + F +S + H R HSGE+P
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 51.8 bits (125), Expect = 1e-09
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY CK C F + L +H RVH
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 39.9 bits (94), Expect = 3e-05
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCED 148
GK++ S L H R HSGEKP
Sbjct: 19 GKSFRWASCLLKHQRVHSGEKPSGPSS 45
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 76.0 bits (188), Expect = 2e-18
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY C +C+KAFS ++LT+H R+HSGEKP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 72.5 bits (179), Expect = 4e-17
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY C+ C K+FS A+LT H R HSGEKP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 64.8 bits (159), Expect = 4e-14
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GEKP+ C +C + FS +S+T H R HSGE+P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C +C FS +L +H RVH
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 39.8 bits (94), Expect = 3e-05
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
K ++ ++L H R HSGEKP
Sbjct: 19 RKAFSHHASLTQHQRVHSGEKPSGPS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 75.6 bits (187), Expect = 4e-18
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 190 HMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ +GE+PY C +C KAFS +L+ H RIHSG+KP
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 71.4 bits (176), Expect = 1e-16
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 134 HLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ +GEKPY C C K+FS +L+ H R HSG+KP
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 64.8 bits (159), Expect = 3e-14
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GEKP+ C +C + FS S++ H R HSG++P
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 51.7 bits (125), Expect = 1e-09
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C +C FS +L+ H R+H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 39.8 bits (94), Expect = 3e-05
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK ++ +L H R HSG+KP
Sbjct: 19 GKAFSHRQSLSVHQRIHSGKKPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 75.3 bits (186), Expect = 4e-18
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C C KAF D+S+ T+H R+H+G++P
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 71.1 bits (175), Expect = 1e-16
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+C +C K+F ++ T H R H+G++P
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 64.5 bits (158), Expect = 4e-14
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP++C C + F +SS T H R H+G+RP
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 49.9 bits (120), Expect = 7e-09
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F + + +H R+H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 38.7 bits (91), Expect = 6e-05
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + S+ H R H+G++P
Sbjct: 19 GKAFGDNSSCTQHQRLHTGQRPSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 75.3 bits (186), Expect = 4e-18
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCK 231
+ + +G+RPY C C KAF S+L H R H+GEKP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 72.2 bits (178), Expect = 6e-17
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +G++PY C +C K+F ++L H R+H+GEKP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 66.4 bits (163), Expect = 9e-15
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +G++P+ C C + F SS+ H R+H+GE+P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+G++PY+C C F +L H R H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + S+L H R+H+GEKP
Sbjct: 19 GKAFKTKSSLICHRRSHTGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 75.3 bits (186), Expect = 5e-18
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY C C KAFS S L H+R HSGEKP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 73.7 bits (182), Expect = 2e-17
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY C +C K+FS + L H+RTHSGEKP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 67.2 bits (165), Expect = 4e-15
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP+ C C + FS S + HMRTHSGE+P
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY C C FS L HMR H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 41.0 bits (97), Expect = 1e-05
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK ++ S L H+RTHSGEKP
Sbjct: 19 GKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 75.2 bits (186), Expect = 5e-18
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY C C KAF+ S L KH +IH+ +KP
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 72.2 bits (178), Expect = 6e-17
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY C +C K+F+ +NL H + H+ +KP
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 64.5 bits (158), Expect = 5e-14
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP+ C C + F+ S++ H + H+ ++P
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY C C F+ NL +H ++H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 38.3 bits (90), Expect = 9e-05
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + S L H + H+ +KP
Sbjct: 19 GKAFTIRSNLIKHQKIHTKQKPSGPS 44
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 75.2 bits (186), Expect = 6e-18
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 190 HMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCK 231
+ +GE+PY C +C KAF S+ L +HLR+H+ E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 70.2 bits (173), Expect = 3e-16
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 134 HLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ +GEKPY C C K+F +A+L H+R H+ E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 64.5 bits (158), Expect = 5e-14
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GEKP+ C +C + F S+ + H+R H+ E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 54.1 bits (131), Expect = 2e-10
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY C +C F S +LN+H+RVH
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 39.0 bits (92), Expect = 6e-05
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + + L HLR H+ E
Sbjct: 19 GKAFVLSAHLNQHLRVHTQETLSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.9 bits (185), Expect = 6e-18
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +G++ ++C CKK F+ SS+LT H RIH+GEKP
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 72.9 bits (180), Expect = 4e-17
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +G+K ++C +C K+F+Q+++LT H R H+GEKP
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 67.2 bits (165), Expect = 4e-15
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +G+K F+C C + F+QSSS+T H R H+GE+P
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+G+K ++C C F+QS +L H R+H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 39.0 bits (92), Expect = 5e-05
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
KT+ + S+L H R H+GEKP
Sbjct: 19 KKTFTQSSSLTVHQRIHTGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.8 bits (185), Expect = 7e-18
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GER Y C C KAF+ STL H RIH+GEKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 71.4 bits (176), Expect = 1e-16
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GE+ Y C +C K+F++ + L H R H+GEKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 64.4 bits (158), Expect = 4e-14
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GE+ + C C + F++ S++ H R H+GE+P
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GE+ Y+C C F++ L H R+H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 39.0 bits (92), Expect = 5e-05
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK +AR STL H R H+GEKP
Sbjct: 19 GKAFARKSTLIMHQRIHTGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.9 bits (185), Expect = 7e-18
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + SGE+PY C C K FS S L+ H R H+GEKP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 73.7 bits (182), Expect = 2e-17
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + SGEKPY C +C K+FSQ + L+AH RTH+GEKP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 66.8 bits (164), Expect = 7e-15
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + SGEKP+ C C + FSQ S ++ H RTH+GE+P
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGEKPY C C FSQ L+ H R H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 41.0 bits (97), Expect = 1e-05
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GKT+++ S L H RTH+GEKP
Sbjct: 19 GKTFSQKSILSAHQRTHTGEKPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.9 bits (185), Expect = 8e-18
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +G +PY C C KAFS S+LT H IH+GEKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 70.6 bits (174), Expect = 2e-16
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +G KPY C +C K+FS ++LT H H+GEKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 9e-14
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +G KP+ C C + FS SS+TTH H+GE+P
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+G KPY C C FS +L H +H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK ++ S+L TH H+GEKP
Sbjct: 19 GKAFSVYSSLTTHQVIHTGEKPSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.5 bits (184), Expect = 9e-18
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C +C K+F S+LT H RIH+GEKP
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 72.9 bits (180), Expect = 4e-17
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+C+ C+KSF ++LT H R H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 66.0 bits (162), Expect = 1e-14
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP++C +C + F SS+T H R H+GE+P
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 4e-09
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C +C F +L H R+H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 39.0 bits (92), Expect = 6e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
K++ S+L H R H+GEKP
Sbjct: 19 HKSFRYGSSLTVHQRIHTGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.4 bits (184), Expect = 9e-18
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GERPY C +C KAF+D S L KH +IH+GEKP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 71.0 bits (175), Expect = 2e-16
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GE+PY C C K+F+ +NL H + H+GEKP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 64.8 bits (159), Expect = 4e-14
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GE+P+ C +C + F+ S++ H + H+GE+P
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GE+PY C +C F+ NL +H ++H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + S L H + H+GEKP
Sbjct: 19 GKAFTDRSNLIKHQKIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.5 bits (184), Expect = 9e-18
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + SGE+PY C C KAF S+ L +H RIH+GEKP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 71.4 bits (176), Expect = 1e-16
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + SGEKPY C+ C K+F +A L H R H+GEKP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 65.2 bits (160), Expect = 2e-14
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCR 203
+ SGEKP+ C C + F S+ + H R H+GE+P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 8e-10
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGEKPY C C F S L RH R+H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + + L H R H+GEKP
Sbjct: 19 GKAFGLSAELVRHQRIHTGEKPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 74.5 bits (184), Expect = 1e-17
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+P+ C C KAFSD L +H RIH+GEKP
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 71.0 bits (175), Expect = 2e-16
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKP+ C DC K+FS L H R H+GEKP
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 64.5 bits (158), Expect = 5e-14
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKPF C C + FS + H R H+GE+P
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKP+ C C FS LN+H R+H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 38.7 bits (91), Expect = 7e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK ++ L H R H+GEKP
Sbjct: 19 GKAFSDHIGLNQHRRIHTGEKPSGPS 44
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 74.2 bits (183), Expect = 1e-17
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+P++C+ C FS S +L KHLR H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 72.6 bits (179), Expect = 5e-17
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKP++C++C +FS + +L H+R+H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 66.8 bits (164), Expect = 7e-15
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKPF+C C FS S S+ H+R+H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 52.6 bits (127), Expect = 9e-10
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKP+QCK C + FS S +L +H+R H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 42.2 bits (100), Expect = 4e-06
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
G ++ +L HLR+H P
Sbjct: 19 GMNFSWSCSLFKHLRSHERTDPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+P+ C C K+FS SS L H RIH+GEKP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 71.4 bits (176), Expect = 1e-16
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKP+ C +C KSFS ++ L H R H+GEKP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 64.8 bits (159), Expect = 3e-14
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GEKPF C C + FS SS + TH R H+GE+P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 8e-10
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKP++C C FS S L H R+H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK+++ S L TH R H+GEKP
Sbjct: 19 GKSFSISSQLATHQRIHTGEKPSGPS 44
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + S EKPY+CEDC K +++ NL H R H GEK
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 73.3 bits (181), Expect = 2e-17
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + S E+PY+C C K ++ L H R+H GEK
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 64.4 bits (158), Expect = 4e-14
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + S EKP++C C + +++ ++ H R H GE+
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
S EKPY+C+ C +++ NL+ H RVH
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 39.0 bits (92), Expect = 6e-05
Identities = 11/25 (44%), Positives = 11/25 (44%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK Y R L H R H GEK
Sbjct: 19 GKGYNRRLNLDMHQRVHMGEKTSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GER Y C C KAF STL+ H RIH GEKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 71.4 bits (176), Expect = 1e-16
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GE+ Y C +C K+F Q + L+ H R H GEKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 62.5 bits (153), Expect = 2e-13
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GE+ + C C + F Q S+++ H R H GE+P
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 50.6 bits (122), Expect = 4e-09
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GE+ Y+C C F Q L+ H R+H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + + STL H R H GEKP
Sbjct: 19 GKAFIQKSTLSMHQRIHRGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCK 231
+ + +GE+PY C +C K+F+ S L H +IH+GEKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 71.8 bits (177), Expect = 1e-16
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY C C KSF++ + L H + H+GEKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 64.9 bits (159), Expect = 3e-14
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GEKP+ C IC + F++ S + H + H+GE+P
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C +C F++ L+ H ++H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 39.8 bits (94), Expect = 3e-05
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK++ + S L H + H+GEKP
Sbjct: 19 GKSFTKKSQLHVHQQIHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 74.1 bits (183), Expect = 1e-17
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY C C+KAF+ S L H R H+GE
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 73.7 bits (182), Expect = 2e-17
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY C +C K+F+ +NL H RTH+GE
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 66.0 bits (162), Expect = 1e-14
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP+ C C + F+ S++ H RTH+GE
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 51.3 bits (124), Expect = 2e-09
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F+ NL H R H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 40.5 bits (96), Expect = 2e-05
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
K + S L H RTH+GE
Sbjct: 19 QKAFNTKSNLMVHQRTHTGESGPSS 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C C KAF S LT H IH+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 71.4 bits (176), Expect = 1e-16
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+C +C K+F +NLT H H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 2e-13
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP++C C + F S++TTH H+GE+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 8e-09
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F NL H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + S L TH H+GEKP
Sbjct: 19 GKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCK 231
+ + +GE+PY C C KAFS S+LT H IH+G+KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 69.9 bits (172), Expect = 5e-16
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY C C K+FS ++LT H H+G+KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GEKP+ C C + FS SS+TTH H+G++P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C FS +L H +H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 39.1 bits (92), Expect = 5e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK ++ S+L TH H+G+KP
Sbjct: 19 GKAFSVRSSLTTHQAIHTGKKPSGPS 44
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + GEK Y+C+ C K FSQ+++L H R H+GEKP
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 72.2 bits (178), Expect = 6e-17
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + GE+ Y+C +C K FS SS L H R+H+GEKP
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 66.0 bits (162), Expect = 1e-14
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ GEK ++C +C + FSQSS + TH R H+GE+P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
GEK Y+C +C FSQS +L H RVH
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 39.0 bits (92), Expect = 6e-05
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK +++ S L+TH R H+GEKP
Sbjct: 19 GKEFSQSSHLQTHQRVHTGEKPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE PY C C KAFS L H R H+GEKP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 72.2 bits (178), Expect = 6e-17
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GE PY C +C K+FS+ L +H RTH+GEKP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 65.2 bits (160), Expect = 2e-14
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GE P+ C C + FS+ + +H RTH+GE+P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 49.8 bits (120), Expect = 7e-09
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GE PY+C C FS+ L H R H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 40.6 bits (96), Expect = 1e-05
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK ++R L +H RTH+GEKP
Sbjct: 19 GKAFSRKYQLISHQRTHAGEKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + SGE+PY+C C KAF + L +H RIH+G +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 71.8 bits (177), Expect = 1e-16
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + SGEKPY+C +C K+F + +L H R H+G +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 64.1 bits (157), Expect = 6e-14
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ SGEKP++C C + F + + + H R H+G RP
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 52.5 bits (127), Expect = 9e-10
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGEKPY+C C F + +LN H R+H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 39.0 bits (92), Expect = 6e-05
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + R + L H R H+G +P
Sbjct: 19 GKAFHRHTHLNEHRRIHTGYRPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 73.7 bits (182), Expect = 1e-17
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C C K F L H +H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 72.6 bits (179), Expect = 4e-17
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+CE+C K F +L H H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 64.9 bits (159), Expect = 3e-14
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP++C C + F + TH H+GE+P
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 6e-09
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C+ C F +L H VH
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 40.6 bits (96), Expect = 1e-05
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + L TH H+GEKP
Sbjct: 19 GKGFICRRDLYTHHMVHTGEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 74.1 bits (183), Expect = 1e-17
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKP+ C +C K+F+ +NL H RTH+GEKP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 72.9 bits (180), Expect = 3e-17
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+P+ C C+KAF+ S L H R H+GEKP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 66.4 bits (163), Expect = 1e-14
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKPF C C + F+ S++ H RTH+GE+P
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 7e-09
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKP++C C F+ NL H R H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 39.0 bits (92), Expect = 6e-05
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
K + S L H RTH+GEKP
Sbjct: 19 QKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 2e-17
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCK 231
+ + +GE+PY C++C KAF+ + L +H + H+GEKP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 72.6 bits (179), Expect = 4e-17
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY C+ C+K+F+Q A+L H +TH+GEKP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 64.5 bits (158), Expect = 4e-14
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP+ C +C + F+Q + + H +TH+GE+P
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 4e-10
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+CK+C F+Q +L +H + H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 40.2 bits (95), Expect = 2e-05
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
K + + + L H +TH+GEKP
Sbjct: 19 SKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 2e-17
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+P+ CR C K+FS +S L H RIH+GE P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 69.9 bits (172), Expect = 4e-16
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKP+ C +C KSFS + L H R H+GE P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 62.9 bits (154), Expect = 1e-13
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GEKP C C + FS +S + H R H+GE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 50.6 bits (122), Expect = 4e-09
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKP++C+ C FS + L H R+H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK+++ S L H R H+GE P
Sbjct: 19 GKSFSFNSQLIVHQRIHTGENPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 2e-17
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+P++C +C K+F S L +H +H+ EKP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 72.5 bits (179), Expect = 4e-17
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKP++C+ C KSF + L H H+ EKP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 66.0 bits (162), Expect = 1e-14
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKPF+C IC + F S + H H+ E+P
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKP++C +C F LNRH VH
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 40.6 bits (96), Expect = 2e-05
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK++ S L H H+ EKP
Sbjct: 19 GKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 73.7 bits (182), Expect = 2e-17
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + SGE+P++C C K F +S H R HSGEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 73.7 bits (182), Expect = 2e-17
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + SGEKP++CE+C K F + +H R+HSGEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 66.4 bits (163), Expect = 9e-15
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + SGEKPF+C C + F +S +H R+HSGE+P
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 50.2 bits (121), Expect = 5e-09
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGEKP++C+ C F + H R H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + S +H R+HSGEKP
Sbjct: 19 GKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 73.7 bits (182), Expect = 2e-17
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 134 HLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPF 172
+ GEKPY+CE C F Q A+L AHV H+G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 69.9 bits (172), Expect = 4e-16
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPY 200
+ GEKP++C C RF Q + + H+ H+G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 69.5 bits (171), Expect = 5e-16
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 190 HMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPY 228
+ GE+PY+C C F + L H+ IH+G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 55.2 bits (134), Expect = 9e-11
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
GEKPY+C+ C RF Q +L H+ +H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 37.9 bits (89), Expect = 1e-04
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPY 144
G + + + L+ H+ H+G P
Sbjct: 18 GARFVQVAHLRAHVLIHTGSGPS 40
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 2e-17
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +G +PY+C C KAFS +S L +H R+H+GEKP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 71.4 bits (176), Expect = 1e-16
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +G KPY+C +C K+FSQ + L H R H+GEKP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +G KP++C C + FSQ+S + H R H+GE+P
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 4e-10
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+G KPYQC C FSQ+ L RH RVH
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 38.7 bits (91), Expect = 7e-05
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK +++ S L H R H+GEKP
Sbjct: 19 GKAFSQTSKLARHQRVHTGEKPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 2e-17
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+CE C K ++ NL H + H+GE+P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 73.3 bits (181), Expect = 2e-17
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C C K ++ L H ++H+GE+P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 65.2 bits (160), Expect = 3e-14
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP++C C + ++ ++ H + H+GERP
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 52.9 bits (128), Expect = 6e-10
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C+ C ++ NL+ H +VH
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 39.0 bits (92), Expect = 5e-05
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK Y L H + H+GE+P
Sbjct: 19 GKGYNSKFNLDMHQKVHTGERPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 73.7 bits (182), Expect = 2e-17
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +G +PY C C KAF S L H R H+GE
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 71.4 bits (176), Expect = 1e-16
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +G KPY C +C K+F + L H RTH+GE
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 64.0 bits (157), Expect = 6e-14
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +G KP+ C C + F S + H RTH+GE
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 50.2 bits (121), Expect = 6e-09
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+G KPY C C F L H R H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 40.5 bits (96), Expect = 1e-05
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + S L H RTH+GE
Sbjct: 19 GKAFRSKSYLIIHTRTHTGESGPSS 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 2e-17
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY C C KAF S L +H RIH+GEKP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 71.4 bits (176), Expect = 1e-16
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY CE+C K+F + L H R H+GEKP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP+ C C + F S + H R H+GE+P
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 51.8 bits (125), Expect = 2e-09
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY C+ C F L H R+H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 39.0 bits (92), Expect = 5e-05
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + S L+ H R H+GEKP
Sbjct: 19 GKAFIHDSQLQEHQRIHTGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 2e-17
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + SGE+PY+C C K F+ +S LT H RIH+GEKP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 72.5 bits (179), Expect = 5e-17
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + SGEKPY+C +C K F+Q ++LT H R H+GEKP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 64.4 bits (158), Expect = 4e-14
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + SGEKP++C C + F+Q+S +T H R H+GE+P
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGEKPY+C C F+Q+ +L H R+H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + + S L H R H+GEKP
Sbjct: 19 GKVFTQNSHLTNHWRIHTGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 2e-17
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PYRC C KAF+ + LT+H RIH+GEKP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 72.5 bits (179), Expect = 4e-17
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPYRC +C K+F+Q ANLT H R H+GEKP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 64.4 bits (158), Expect = 4e-14
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP+RC C + F+Q +++T H R H+GE+P
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F+Q NL +H R+H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 38.6 bits (91), Expect = 7e-05
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK +A+ + L H R H+GEKP
Sbjct: 19 GKAFAQKANLTQHQRIHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 2e-17
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C C KAFS +S L +H RIH+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 71.4 bits (176), Expect = 1e-16
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+C +C K+FSQ + L H R H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 8e-14
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GEKP++C C + FSQ+S + H R H+GE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C FSQ+ L RH R+H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 38.3 bits (90), Expect = 9e-05
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK +++ S L H R H+GEKP
Sbjct: 19 GKAFSQTSKLARHQRIHTGEKPSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 2e-17
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY C C K+F S L H RIH+GE P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 71.4 bits (176), Expect = 1e-16
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY C DC KSF + + L H R H+GE P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 64.5 bits (158), Expect = 4e-14
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP+ C C + F + S + H R H+GE P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F + L+ H R+H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 38.7 bits (91), Expect = 8e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK++ + S L H R H+GE P
Sbjct: 19 GKSFIKKSQLHVHQRIHTGENPSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 2e-17
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PYRC C KAF+D S L H +IH+GEKP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 72.2 bits (178), Expect = 8e-17
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPYRC +C K+F+ +NL H + H+GEKP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 64.8 bits (159), Expect = 4e-14
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP+RC C + F+ S++ TH + H+GE+P
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F+ NL H ++H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 38.6 bits (91), Expect = 8e-05
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + S L TH + H+GEKP
Sbjct: 19 GKAFTDRSNLFTHQKIHTGEKPSGPS 44
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 73.3 bits (181), Expect = 3e-17
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+P++C C K FS S L H ++H+GEKP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 72.2 bits (178), Expect = 8e-17
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKP++C +C K FS+ + L H + H+GEKP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 65.6 bits (161), Expect = 2e-14
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKPF+C C + FS+ S++ H + H+GE+P
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKP++C C FS+ LN H ++H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK ++R S L H + H+GEKP
Sbjct: 19 GKGFSRRSALNVHHKLHTGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 3e-17
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 190 HMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ +GE+PY+C++C KAF SS L +H +HSGE+P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 70.2 bits (173), Expect = 3e-16
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 134 HLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ +GEKPY+C+ C K+F +++L H HSGE+P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 63.7 bits (156), Expect = 8e-14
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GEKP++C +C + F SS + H HSGERP
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 52.5 bits (127), Expect = 8e-10
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C++C F S +L +H VH
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + S L H HSGE+P
Sbjct: 19 GKAFRVSSHLVQHHSVHSGERPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 3e-17
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 190 HMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ SGERPY C C K F S L +HL+ H EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 70.2 bits (173), Expect = 3e-16
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 134 HLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ SGE+PY C +C K+F + ++L H++ H EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 64.1 bits (157), Expect = 7e-14
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ SGE+P+ C C + F + S + H++ H E+
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 49.8 bits (120), Expect = 8e-09
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGE+PY C C F + +L H++ H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 41.7 bits (99), Expect = 6e-06
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + R S L HL+ H EK
Sbjct: 19 GKNFGRHSHLIEHLKRHFREKSSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 3e-17
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+C DC K+F++ + L H ++H+GE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 72.2 bits (178), Expect = 7e-17
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C C KAF+ S L H + H+GE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 66.4 bits (163), Expect = 1e-14
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GEKP++C C + F++ S + H ++H+GER
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 50.6 bits (122), Expect = 4e-09
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F++ L+ H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 39.8 bits (94), Expect = 3e-05
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + R S L H ++H+GE+
Sbjct: 19 GKAFTRKSGLHIHQQSHTGERHSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 3e-17
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +G++PY+C C K F+ +S L +H IH+GEKP
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 71.0 bits (175), Expect = 2e-16
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +G+KPY+C +C K F+Q ++L H H+GEKP
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 62.9 bits (154), Expect = 1e-13
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +G+KP++C C + F+Q+S + H H+GE+P
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+G+KPY+C C F+Q+ +L RH +H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + + S L H H+GEKP
Sbjct: 19 GKVFTQNSHLARHRGIHTGEKPSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 3e-17
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + SGE+P++C+ C KAF + L HLRIH+GEKP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 71.8 bits (177), Expect = 1e-16
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + SGEKP++C++C K+F Q +L +H+R H+GEKP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 64.4 bits (158), Expect = 4e-14
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + SGEKPF+C C + F Q+ + +H+R H+GE+P
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 5e-10
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGEKP++CK C F Q+ +L H+R+H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 39.0 bits (92), Expect = 5e-05
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + + L +HLR H+GEKP
Sbjct: 19 GKAFRQNIHLASHLRIHTGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 3e-17
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +G + + C C KAF+ STL+ H +IH+GEKP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 70.6 bits (174), Expect = 2e-16
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +G K + C +C K+F++ + L+ H + H+GEKP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 8e-14
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +G K F C C + F++ S+++ H + H+GE+P
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 8e-09
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+G K ++C C F++ L+ H ++H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + R STL H + H+GEKP
Sbjct: 19 GKAFTRKSTLSMHQKIHTGEKPSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 72.9 bits (180), Expect = 3e-17
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +G KPY C C K+FS + L H R+H+G KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 72.9 bits (180), Expect = 4e-17
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +G +PY C C K FS S L H R H+G KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 65.6 bits (161), Expect = 2e-14
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +G KP+ C C + FS S + H R+H+G +P
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 49.8 bits (120), Expect = 9e-09
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+G KPY C C FS L H R H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 40.2 bits (95), Expect = 2e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
KT++ S L H R+H+G KP
Sbjct: 19 AKTFSLKSQLIVHQRSHTGVKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 4e-17
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + SGE+P++C C K F+ +S L H R+H+GEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 72.6 bits (179), Expect = 4e-17
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + SGEKP++CE+C K F+Q + L +H R H+GEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 66.0 bits (162), Expect = 1e-14
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ SGEKPF+C C +RF+Q+S + +H R H+GE+P
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGEKP++C+ C RF+Q+ L+ H RVH
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 39.0 bits (92), Expect = 5e-05
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + + S L +H R H+GEKP
Sbjct: 19 GKRFTQNSQLHSHQRVHTGEKPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.0 bits (180), Expect = 4e-17
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCK 231
+ + SG++PY C+ C+K F L +H R+H+GE+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 70.6 bits (174), Expect = 2e-16
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + SG+KPY C++C K+F Q +L H R H+GE+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 62.2 bits (152), Expect = 3e-13
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + SG+KP+ C C + F Q + H R H+GER
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 49.5 bits (119), Expect = 1e-08
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SG+KPY+CK C F Q G+LN+H RVH
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
KT+ + L H R H+GE+
Sbjct: 19 RKTFIQIGHLNQHKRVHTGERSSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 72.9 bits (180), Expect = 4e-17
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY C+ C KAFS ++ L +H R+H+GEKP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 70.6 bits (174), Expect = 3e-16
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY C++C K+FSQ +L H R H+GEKP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 62.9 bits (154), Expect = 2e-13
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCR 203
+ +GEKP+ C C + FSQ++ + H R H+GE+P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 7e-10
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+CK C FSQ+ +L +H RVH
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK +++ + L H R H+GEKP
Sbjct: 19 GKAFSQTTHLIQHQRVHTGEKPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.0 bits (180), Expect = 4e-17
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + GE+PY+C C K+FS S LT+H H+ EKP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 69.1 bits (170), Expect = 9e-16
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + GEKPY+C +C KSFS + LT H TH+ EKP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 63.7 bits (156), Expect = 8e-14
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + GEKP++C C + FS S +T H TH+ E+P
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
GEKPYQC C FS S L +H H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK+++ L H TH+ EKP
Sbjct: 19 GKSFSGSYRLTQHWITHTREKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.6 bits (179), Expect = 4e-17
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+C DC KSF+ + L H + H+GE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 72.6 bits (179), Expect = 4e-17
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C C K+F+ S L H + H+GE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 65.3 bits (160), Expect = 2e-14
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP++C C + F+ S + H + H+GER
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 49.1 bits (118), Expect = 1e-08
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F+ L H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 39.1 bits (92), Expect = 5e-05
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK++ S L+ H + H+GE+
Sbjct: 19 GKSFTWKSRLRIHQKCHTGERHSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 72.5 bits (179), Expect = 4e-17
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPY 200
+ GEKP+ C IC RF ++ +H+R H+G P
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 72.5 bits (179), Expect = 5e-17
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 134 HLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPF 172
+ GEKPY CE C F L +H+R H+G P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 71.0 bits (175), Expect = 2e-16
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 190 HMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPY 228
+ GE+PY C +C F TL HLRIH+G P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 55.2 bits (134), Expect = 1e-10
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
GEKPY C++C RF L H+R+H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 40.9 bits (97), Expect = 1e-05
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPY 144
G + TLK+HLR H+G P
Sbjct: 18 GTRFRHLQTLKSHLRIHTGSGPS 40
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 72.6 bits (179), Expect = 5e-17
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+ Y+C C K FS +S L++H +IH+GEKP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 70.6 bits (174), Expect = 3e-16
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEK Y+C +C K FS+ + L+ H + H+GEKP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 2e-13
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GEK ++C C + FS++S ++ H + H+GE+P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEK Y+C C FS++ L++H ++H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK ++R S L H + H+GEKP
Sbjct: 19 GKVFSRNSQLSQHQKIHTGEKPSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.5 bits (179), Expect = 5e-17
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY C C K+F S L +H RIH+GEKP
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 72.2 bits (178), Expect = 6e-17
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY C +C KSF Q ++L H R H+GEKP
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 9e-14
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP+ C C + F Q S + H R H+GE+P
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY C C F Q +LNRH R+H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK++ + S L H R H+GEKP
Sbjct: 19 GKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 72.6 bits (179), Expect = 5e-17
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +G++P+ C C K+F L H RIH+GEK
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 72.6 bits (179), Expect = 5e-17
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +G+KP+ C C KSF NL H R H+GEK
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 64.9 bits (159), Expect = 3e-14
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +G+KPF C C + F ++ TH R H+GE+
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 51.8 bits (125), Expect = 1e-09
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+G+KP++C C F GNL H R+H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK++ L TH R H+GEK
Sbjct: 19 GKSFRAKGNLVTHQRIHTGEKSGPS 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.6 bits (179), Expect = 5e-17
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C C KAF S+L H HSGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 71.0 bits (175), Expect = 2e-16
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+C +C K+F ++L H THSGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 64.1 bits (157), Expect = 5e-14
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GEKP++C C + F SS+ H THSGE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 50.2 bits (121), Expect = 7e-09
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F +L H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + S+L H THSGEKP
Sbjct: 19 GKAFRARSSLAIHQATHSGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.5 bits (179), Expect = 5e-17
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C C K F+ +S L +H IH+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 71.0 bits (175), Expect = 2e-16
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+C +C K F+Q ++L H H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP++C C + F+Q+S + H H+GE+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 8e-10
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F+Q+ +L RH +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 39.0 bits (92), Expect = 5e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + + S L H H+GEKP
Sbjct: 19 GKVFTQNSHLARHRGIHTGEKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.5 bits (179), Expect = 6e-17
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE P+ C C K F+ + L H +IH+GE+P
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 72.1 bits (178), Expect = 6e-17
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GE P+ C +C K F+ NL H + H+GE+P
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 66.0 bits (162), Expect = 1e-14
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GE PF C C + F+ +++ H + H+GERP
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 49.8 bits (120), Expect = 8e-09
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GE P+ C C F+ NL H ++H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 38.2 bits (90), Expect = 1e-04
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + + L H + H+GE+P
Sbjct: 19 GKVFTHKTNLIIHQKIHTGERPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 72.2 bits (178), Expect = 6e-17
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + SGE+PY C C KAF S L H R H+G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 71.0 bits (175), Expect = 1e-16
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + SGEKPY C +C K+F + L H RTH+G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 62.9 bits (154), Expect = 1e-13
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + SGEKP+ C C + F S + H RTH+G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 48.7 bits (117), Expect = 2e-08
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGEKPY+C C F L H R H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 38.7 bits (91), Expect = 8e-05
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + S L H RTH+G
Sbjct: 19 GKAFIWKSLLIVHERTHAGVSGPSS 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 7e-17
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GERP++C C K+F S+ L +H RIH+GEKP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 71.8 bits (177), Expect = 1e-16
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GE+P++C +C KSF Q+A+L H R H+GEKP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GE+P +C C + F QS+ + H R H+GE+P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 4e-09
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GE+P++C C F QS +L +H R+H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK++ + + L H R H+GEKP
Sbjct: 19 GKSFIQSAHLIQHQRIHTGEKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 7e-17
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKP++C +C KS++Q +LT H R H+GEKP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 71.8 bits (177), Expect = 8e-17
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+P++C C K+++ LT+H R+H+GEKP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GEKPF+C C + ++Q +T H R H+GE+P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKP++C C ++Q +L +H RVH
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK+Y + L H R H+GEKP
Sbjct: 19 GKSYNQRVHLTQHQRVHTGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 7e-17
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + SGE+P++C C K F+ +S L H R+H+GEKP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 71.8 bits (177), Expect = 9e-17
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + SGEKP++CE+C K F+Q ++L +H R H+GEKP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 64.9 bits (159), Expect = 3e-14
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ SGEKPF+C C +RF+Q+S + +H R H+GE+P
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 7e-10
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGEKP+QC+ C RF+Q+ +L+ H RVH
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 39.1 bits (92), Expect = 5e-05
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + + S L +H R H+GEKP
Sbjct: 19 GKRFTQNSHLHSHQRVHTGEKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 8e-17
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + SGE+PY+C C K + L H R+H+GEK
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 71.8 bits (177), Expect = 1e-16
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + SGEKPY+C +C K + + +L H R H+GEK
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 64.1 bits (157), Expect = 6e-14
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + SGEKP++C C + + + + H R H+GE+
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 51.8 bits (125), Expect = 1e-09
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGEKPY+C C + + +L+ H RVH
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 39.1 bits (92), Expect = 5e-05
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK Y R L H R H+GEK
Sbjct: 19 GKGYKRRLDLDFHQRVHTGEKLSGP 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 71.8 bits (177), Expect = 1e-16
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLR-IHSGEKPYQC 230
+ + +G++PY C C KAF +++L +H R H+GEKP
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 68.4 bits (168), Expect = 2e-15
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVR-THSGEKPFRCP 175
+ + +G+KPY C +C K+F Q +L H R H+GEKP
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 61.4 bits (150), Expect = 5e-13
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMR-THSGERPYRC 202
+ + +G+KP+ C C + F Q++S+ H R H+GE+P
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 47.9 bits (115), Expect = 4e-08
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMR 248
+G+KPY+C C F Q+ +L RH R
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWR 33
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 1e-16
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C C K F +S L++H RIH+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 70.2 bits (173), Expect = 3e-16
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+C +C K F + L+ H R H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 62.9 bits (154), Expect = 1e-13
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ +GEKP++C C + F +S ++ H R H+GE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 9e-09
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F + L+RH R+H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 39.8 bits (94), Expect = 3e-05
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + S L H R H+GEKP
Sbjct: 19 GKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.7 bits (177), Expect = 1e-16
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C C K F +S L +H IH+GEKP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 70.2 bits (173), Expect = 4e-16
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+C +C K F + ++L H H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 62.1 bits (152), Expect = 3e-13
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP++C C + F ++S + H H+GE+P
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 50.9 bits (123), Expect = 3e-09
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F ++ +L RH +H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 39.0 bits (92), Expect = 5e-05
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + R S L H H+GEKP
Sbjct: 19 GKVFRRNSHLARHQLIHTGEKPSGPS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 1e-16
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C C K F+ +S L +H R+H+G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 69.9 bits (172), Expect = 4e-16
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+C +C K F+Q ++L H R H+G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 62.9 bits (154), Expect = 2e-13
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP++C C + F+Q+S + H R H+G +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F+Q+ +L RH RVH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + + S L H R H+G KP
Sbjct: 19 GKVFTQNSHLARHRRVHTGGKPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 1e-16
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C C K F+ +S L +H IH+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 71.0 bits (175), Expect = 2e-16
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+C +C K F+Q ++L H H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP++C C + F+Q+S + H H+GE+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 50.9 bits (123), Expect = 3e-09
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F+Q+ +L RH +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 38.6 bits (91), Expect = 6e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + + S L H H+GEKP
Sbjct: 19 GKVFTQNSHLVRHRGIHTGEKPSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 71.4 bits (176), Expect = 1e-16
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + GER +RC C K F +S +H RIH+GEKP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 71.0 bits (175), Expect = 2e-16
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + GE+ +RC DC K F QA+N H R H+GEKP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ GE+ RC C + F Q+S+ H R H+GE+P
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 4e-09
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
GE+ ++C C F Q+ N +H R+H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 35.6 bits (83), Expect = 8e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + + S H R H+GEKP
Sbjct: 19 GKFFLQASNFIQHRRIHTGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 2e-16
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+PY+C C K F+ +S L H RIH+G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 71.0 bits (175), Expect = 2e-16
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKPY+C +C K F+Q ++L H R H+G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 62.5 bits (153), Expect = 2e-13
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP++C C + F+Q+S + H R H+G +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKPY+C C F+Q+ +L H R+H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 38.7 bits (91), Expect = 8e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + + S L H R H+G KP
Sbjct: 19 GKVFTQNSHLANHQRIHTGVKPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 71.0 bits (175), Expect = 2e-16
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + GE+ ++CR C FS +S+L H +H GEKP
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 70.7 bits (174), Expect = 2e-16
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + GEK ++C +C+ FSQA++L H H GEKP
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 65.6 bits (161), Expect = 2e-14
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + GEK ++C CD FSQ+SS+ H H GE+P
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 47.5 bits (114), Expect = 5e-08
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
GEK ++C+ C + FSQ+ +L H VH
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 38.7 bits (91), Expect = 7e-05
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
+++ S+L+ H H GEKP
Sbjct: 19 DMCFSQASSLRLHQNVHVGEKPSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 2e-16
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + SGERP++C C K F S L HLR+HS EK
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 68.7 bits (169), Expect = 1e-15
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + SGE+P++C +C K F + ++L H+R HS EK
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 61.8 bits (151), Expect = 4e-13
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ SGE+PF+C C + F + S + H+R HS E+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGE+P++C C F + +L H+R+H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + R S L HLR HS EK
Sbjct: 19 GKGFGRRSHLAGHLRLHSREKSSGP 43
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 72.3 bits (177), Expect = 2e-16
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 137 THSGEKPYRCEDCNKSFSQAANLTAHV-RTHSGEKPFR--------CPICDRRFSQSSSV 187
+ + C+++FS L HV H G CP + F +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 188 TTHMRTHSGERPYRC 202
H+R H+GE+
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 58.4 bits (141), Expect = 2e-11
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 122 GKTYARPSTLKTHL-RTHSGEKPYR--------CEDCNKSFSQAANLTAHVRTHSGEKPF 172
+T++ L TH+ H G C KSF L H+R H+GEK
Sbjct: 32 DRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSG 91
Query: 173 RC 174
Sbjct: 92 PS 93
Score = 53.0 bits (127), Expect = 2e-09
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 9/67 (13%)
Query: 193 THSGERPYRCRLCKKAFSDSSTLTKHL-RIHSGEKPYQCKLCLLR--------FSQSGNL 243
+ + C + FS L H+ H G +C F L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 244 NRHMRVH 250
H+RVH
Sbjct: 79 VNHIRVH 85
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 70.6 bits (174), Expect = 3e-16
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 192 RTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
SGE PY C C KAF+ L H R H+GE
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 68.7 bits (169), Expect = 1e-15
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 136 RTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
SGE PY C +C K+F++ L +H RTH+GE
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 62.1 bits (152), Expect = 3e-13
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 164 RTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
SGE P+ C C + F++ + +H RTH+GE
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 44.8 bits (107), Expect = 4e-07
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 220 RIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGE PY+C C F++ L H R H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 39.4 bits (93), Expect = 3e-05
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + R L +H RTH+GE
Sbjct: 17 GKAFNRKDQLISHQRTHAGESGPSS 41
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 70.4 bits (173), Expect = 3e-16
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 161 AHVRTHSGEKPFRC--PICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKPF C P C RFS+S ++ H R+HSG +P
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 69.6 bits (171), Expect = 7e-16
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 133 THLRTHSGEKPYRC--EDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKP+ C C FS++ L+ H R+HSG KP
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 66.9 bits (164), Expect = 6e-15
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 189 THMRTHSGERPYRC--RLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+P+ C C FS S L++H R HSG KP
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 51.9 bits (125), Expect = 2e-09
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 218 HLRIHSGEKPYQCK--LCLLRFSQSGNLNRHMRVH 250
+GEKP+ C C RFS+S L+RH R H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 40.7 bits (96), Expect = 1e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
G ++R L H R+HSG KP
Sbjct: 21 GWRFSRSDELSRHRRSHSGVKPSGPS 46
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 70.3 bits (173), Expect = 4e-16
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +G PY+C C KSFS L H R H+ EKP
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 69.5 bits (171), Expect = 6e-16
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +G PY+C C+K+FS L H R+H+ EKP
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 64.1 bits (157), Expect = 7e-14
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +G P++C C++ FS + H R H+ E+P
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+G PY+C C FS L H R+H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 38.3 bits (90), Expect = 9e-05
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
K+++ L H R H+ EKP
Sbjct: 19 EKSFSGKLRLLVHQRMHTREKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 5e-16
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE+P +C C KAF S L H R H +K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 69.1 bits (170), Expect = 8e-16
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GEKP +C +C K+F + L H RTH +K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 63.7 bits (156), Expect = 9e-14
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GEKP +C C + F S + H RTH ++
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 44.1 bits (105), Expect = 8e-07
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GEKP +C C F L H R H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 39.1 bits (92), Expect = 6e-05
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + S L H RTH +K
Sbjct: 19 GKAFCWKSQLIMHQRTHVDDKHSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 69.5 bits (171), Expect = 7e-16
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 190 HMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPY 228
+ GE+PYRC C KAFS +L H+R+H+G P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 69.1 bits (170), Expect = 7e-16
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 134 HLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPF 172
+ GEKPYRC+ C K+FSQ +L H+R H+G P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 64.9 bits (159), Expect = 3e-14
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPY 200
+ GEKP+RC C + FSQ S+ H+R H+G P
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 53.3 bits (129), Expect = 4e-10
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
GEKPY+C C FSQ G+L H+RVH
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPY 144
GK +++ +L H+R H+G P
Sbjct: 18 GKAFSQKGSLIVHIRVHTGSGPS 40
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 69.1 bits (170), Expect = 8e-16
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + +GE PY C C K FS L H + HSG+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 67.5 bits (166), Expect = 3e-15
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + +GE PY C +C K FS+ L +H +THSG+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 60.2 bits (147), Expect = 2e-12
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + +GE P+ C C + FS+ + +H +THSG+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 44.4 bits (106), Expect = 7e-07
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GE PY+C C FS+ L H + H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 38.6 bits (91), Expect = 7e-05
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK ++R L +H +THSG+
Sbjct: 19 GKVFSRKDQLVSHQKTHSGQSGPSS 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 67.6 bits (166), Expect = 3e-15
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 136 RTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
SGEKP+ C C K+FS + L H +TH+ EKP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 66.8 bits (164), Expect = 6e-15
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 192 RTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
SGE+P+ C C+KAFS S L H + H+ EKP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 62.9 bits (154), Expect = 2e-13
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 164 RTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
SGEKPF C C++ FS S + H +TH+ E+P
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 220 RIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGEKP+ C C FS L H + H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 40.2 bits (95), Expect = 2e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
K ++ S L H +TH+ EKP
Sbjct: 17 EKAFSSKSYLLVHQQTHAEEKPSGP 41
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 68.1 bits (166), Expect = 4e-15
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Query: 126 ARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSS 185
+ + H G++ +C C F + + T S K C C + Q +
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCSKCGIIFIRRS-------TLSRRKTPMCEKCRKDSCQEA 53
Query: 186 SVTTHMRTHSGERPY 200
++ SG++
Sbjct: 54 ALNKDEGNESGKKTS 68
Score = 66.2 bits (161), Expect = 2e-14
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 156 AANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTL 215
+ + + H G++ +C C F + S+ S + C C+K + L
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAAL 55
Query: 216 TKHLRIHSGEKPY 228
K SG+K
Sbjct: 56 NKDEGNESGKKTS 68
Score = 61.6 bits (149), Expect = 1e-12
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 184 SSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNL 243
S S + H G+R +C C F STL++ K C+ C Q L
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAAL 55
Query: 244 NRHMRVH 250
N+
Sbjct: 56 NKDEGNE 62
Score = 26.2 bits (57), Expect = 3.7
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPY 144
K + + L SG+K
Sbjct: 46 RKDSCQEAALNKDEGNESGKKTS 68
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 67.2 bits (165), Expect = 5e-15
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + S + ++C C + F+ S L +H RIH+GEKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 66.8 bits (164), Expect = 6e-15
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + S K ++C +C + F+ ++L H R H+GEKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 59.9 bits (146), Expect = 2e-12
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ S K +C C R F+ S + H R H+GE+P
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 49.9 bits (120), Expect = 8e-09
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
S K +QC C F+ +LN+H R+H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
G+ + S L H R H+GEKP
Sbjct: 19 GRGFTLKSHLNQHQRIHTGEKPSGP 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 67.4 bits (164), Expect = 5e-15
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 144 YRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
Y CE+C + + L H+RTH+ +P+ C C+ F ++T HM++ + +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 64.7 bits (157), Expect = 6e-14
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
G +PS LK H+RTH+ +PY C CN SF NLT H+++ + K
Sbjct: 8 GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 64.0 bits (155), Expect = 8e-14
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 172 FRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
+ C C R + S + H+RTH+ RPY C C +F LTKH++ + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 57.4 bits (138), Expect = 2e-11
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 200 YRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
Y C C S L KH+R H+ +PY C C F GNL +HM+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 65.4 bits (160), Expect = 2e-14
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 134 HLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPF 172
+ GE PY C C KSF+Q +L H R+ S P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 62.3 bits (152), Expect = 3e-13
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 190 HMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPY 228
+ GE PY C C K+F+ +L H R S P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 59.6 bits (145), Expect = 3e-12
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPY 200
+ GE P+ C C + F+Q S+ H R+ S P
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 47.7 bits (114), Expect = 4e-08
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
GE PY C C F+Q G+L H R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 34.9 bits (81), Expect = 0.001
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPY 144
GK++ + +L H R+ S P
Sbjct: 18 GKSFTQRGSLAVHQRSCSQSGPS 40
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 65.3 bits (160), Expect = 2e-14
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 190 HMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ SGE+ + C C K F S L H R+H GEK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 64.5 bits (158), Expect = 4e-14
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 134 HLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ SGEK + C++C K+F + L H R H GEK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 56.8 bits (138), Expect = 3e-11
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ SGEK C C + F S++ H R H GE+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 46.8 bits (112), Expect = 1e-07
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGEK + C C F L H RVH
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCE 147
GK + S L+ H R H GEK
Sbjct: 19 GKNFCYISALRIHQRVHMGEKCSGPS 44
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 64.5 bits (158), Expect = 4e-14
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 190 HMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
+ + + Y C C KAF+ LT+H +IH+ +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 62.6 bits (153), Expect = 2e-13
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 134 HLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
+ + K Y C +C K+F++ +LT H + H+ +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
+ + K + C C + F++ +T H + H+ +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 50.3 bits (121), Expect = 6e-09
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+ K Y C C F++ +L RH ++H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 29.1 bits (66), Expect = 0.17
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
GK + R L H + H+ +
Sbjct: 19 GKAFTRIFHLTRHQKIHTRKSGPSS 43
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 63.7 bits (156), Expect = 8e-14
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 192 RTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPY 228
SG+R Y C+ C K+F +LT H RIH+G P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 63.4 bits (155), Expect = 1e-13
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 136 RTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPF 172
SG++ Y C++C KSF Q +LT H R H+G P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 54.5 bits (132), Expect = 2e-10
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 164 RTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPY 200
SG++ + C C + F Q S+T H R H+G P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 44.5 bits (106), Expect = 5e-07
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 220 RIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SG++ Y+C+ C F Q G+L H R+H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 34.9 bits (81), Expect = 0.001
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPY 144
GK++ + +L H R H+G P
Sbjct: 17 GKSFRQKGSLTLHERIHTGSGPS 39
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 60.8 bits (148), Expect = 8e-13
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 192 RTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
SGE+PY C CK+ FSD++ L +H ++H+ +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 58.5 bits (142), Expect = 5e-12
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 136 RTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC 174
SGEKPY C +C ++FS L H + H+ +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 54.3 bits (131), Expect = 2e-10
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 164 RTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 202
SGEKP+ C C FS ++ + H + H+ +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 43.1 bits (102), Expect = 2e-06
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 220 RIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGEKPY C C FS + L +H ++H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 29.6 bits (67), Expect = 0.10
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRC 146
+T++ + L H + H+ +
Sbjct: 17 KETFSDNNRLVQHQKMHTVKSGPSS 41
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 58.9 bits (143), Expect = 3e-12
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTH 194
R +G KPF+CP CDR FS+S + H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 53.1 bits (128), Expect = 5e-10
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 134 HLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTH 166
R +G KP++C DC++SFS++ +L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 52.0 bits (125), Expect = 1e-09
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 190 HMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIH 222
R +G +P++C C ++FS S L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 51.2 bits (123), Expect = 2e-09
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 218 HLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
R +G KP+QC C FS+S +L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 61.1 bits (147), Expect = 6e-12
Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 14/124 (11%)
Query: 129 STLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRC----PICDRRFSQS 184
S K +L H G + H T ++ R I + +
Sbjct: 8 SGSKKYLSNHKG--------IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDE 59
Query: 185 SSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLN 244
SS + + C LC FS S +L +H+R E C +C F+ + +
Sbjct: 60 SSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSAL 117
Query: 245 RHMR 248
H+
Sbjct: 118 DHVC 121
Score = 55.3 bits (132), Expect = 7e-10
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 112 IRLILIQFIPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
IR I+ I S+ L + C C FS + +L H+R E
Sbjct: 43 IRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHT 100
Query: 172 FRCPICDRRFSQSSSVTTHMRTH 194
CP+C + F+ + S H+
Sbjct: 101 KVCPVCKKEFTSTDSALDHVCKK 123
Score = 42.2 bits (98), Expect = 3e-05
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Query: 167 SGEKPFRCP--ICDRRFSQSSSVTTHMRTHSGERPYRC----RLCKKAFSDSSTLTKHLR 220
SG K + + H T +R R + D S+ L
Sbjct: 8 SGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67
Query: 221 IHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGSQY 254
+ C LCL+ FS S +L +H+R
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK 101
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 54.5 bits (131), Expect = 2e-10
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 133 THLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
+ + +GE P++C C++ F+Q L H RTH+ +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 52.9 bits (127), Expect = 7e-10
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 189 THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
+ + +GE P++C C + F+ + L +H R H+ +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 51.8 bits (124), Expect = 2e-09
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 AHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
+ + +GE PF+C CDR F+Q + + H RTH+ +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 41.0 bits (96), Expect = 1e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 217 KHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
+GE P++C C F+Q L +H R H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 25.2 bits (55), Expect = 5.0
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 122 GKTYARPSTLKTHLRTHSGEKP 143
+ + + + L H RTH+ +
Sbjct: 19 DRVFTQRNYLVQHERTHARKSG 40
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 54.2 bits (130), Expect = 3e-10
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 192 RTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLC 233
+ + C +C K F D L +H HSGEKPY
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 53.0 bits (127), Expect = 6e-10
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 136 RTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPIC 177
+ K CE C K F +L H +HSGEKP+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 49.9 bits (119), Expect = 7e-09
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 164 RTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLC 205
+ K C IC + F + H +HSGE+PY
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 37.2 bits (86), Expect = 2e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCN 150
GK + L H +HSGEKPY +
Sbjct: 19 GKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 33.4 bits (76), Expect = 0.007
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 220 RIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
K C++C F +LNRH H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 53.4 bits (127), Expect = 2e-09
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 140 GEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
++ Y+C CN S +H R CP C RF H + +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ESKCEYKK 69
Query: 200 YRCRLCKKAFSDSSTLTKH 218
C C + F S ++ +H
Sbjct: 70 LTCLECMRTFKSSFSIWRH 88
Score = 51.8 bits (123), Expect = 8e-09
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 5/104 (4%)
Query: 156 AANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTL 215
++ ++ ++ ++C +C+ + S +H R C C F
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELK 58
Query: 216 TKHLRIHSGEKPYQCKLCLLRFSQSGNLNRH-MRVHGSQYNMLP 258
+H K C C+ F S ++ RH + VH Q NM P
Sbjct: 59 QEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN-QNNMAP 100
Score = 29.5 bits (65), Expect = 0.52
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRT 165
+ P + H + K C +C ++F + ++ H
Sbjct: 49 SLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVE 91
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 53.3 bits (127), Expect = 5e-08
Identities = 24/203 (11%), Positives = 52/203 (25%), Gaps = 9/203 (4%)
Query: 2 KKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSECPGSGMGKP--PHDVADVLLSLK 59
K+ +K K K K + SS Q+ P +
Sbjct: 2 KRIPRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIAS 61
Query: 60 HAVVHPGQMTPPPYGDPGAPYQVGAPQQFPTASLSY-TVHPHQSSRGRPLNSGIRLILIQ 118
P D G P + G + S ++++ + ++ +
Sbjct: 62 VQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVT 121
Query: 119 FIPGKTYARPSTLKTHLRTHSGEKPYR------CEDCNKSFSQAANLTAHVRTHSGEKPF 172
+ ++ + G + E + S+ T S +
Sbjct: 122 YSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGY 181
Query: 173 RCPICDRRFSQSSSVTTHMRTHS 195
+C +C + H+ +H
Sbjct: 182 QCHVCSAVLFSPLDLDAHVASHG 204
Score = 46.0 bits (108), Expect = 1e-05
Identities = 23/214 (10%), Positives = 46/214 (21%), Gaps = 11/214 (5%)
Query: 10 KKKKKKKKRKKKGILANSSSKEKIQDRSECPGSGMGKPPHDVADVLLSLKHAVVHPGQMT 69
K+ +K K K G +S+ + P + + PG +
Sbjct: 2 KRIPRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIAS 61
Query: 70 PPPYGDPGAPYQVGAPQQFPTASLSYTVHPHQSSRGRPLNSGIRLILIQFIPGKTYARPS 129
+ + P + + + A+ +
Sbjct: 62 VQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADE--------ATQKQAKDT 113
Query: 130 TLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTT 189
T+S + N+ S+ +
Sbjct: 114 DKSKAQVTYSDTGI---NNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVG 170
Query: 190 HMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHS 223
T S Y+C +C L H+ H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Score = 44.1 bits (103), Expect = 5e-05
Identities = 29/218 (13%), Positives = 47/218 (21%), Gaps = 28/218 (12%)
Query: 40 PGSGMGKPPHDVADVLLSLKHAVVHPGQMTPPPYGDPGAPYQVGAPQQFPTASLSYTVHP 99
G GK P +PG Q ++
Sbjct: 9 KGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPG---TSNREQYRARPGIASVQRA 65
Query: 100 HQSSRGRPLNSGIRLILIQFIPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANL 159
+S+ N+ G + +T + HS K E K
Sbjct: 66 TESAELPMKNND---------EGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKS 116
Query: 160 TAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYR------CRLCKKAFSDSS 213
A V + + + + G + S
Sbjct: 117 KAQVTYSDTGIN----------NANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHP 166
Query: 214 TLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHG 251
S YQC +C +L+ H+ HG
Sbjct: 167 ARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 45.9 bits (108), Expect = 7e-07
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 162 HVRTHSGEKPFRCPICDRRFSQSSSVTTHMRT-HSGER---PYRCRLCKKAFSDSSTLTK 217
+ + E + C C + + T H+ + H Y C C L++
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 218 H-LRIHSGEKPYQCKL 232
H L+ H GE+ ++ +
Sbjct: 69 HNLKYHPGEENFKLTM 84
Score = 45.5 bits (107), Expect = 1e-06
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 134 HLRTHSGEKPYRCEDCNKSFSQAANLTAHVRT-HSG---EKPFRCPICDRRFSQSSSVTT 189
+ + E Y C+ C T HV + H + C C+ + +++
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 190 H-MRTHSGERPYRCRLCKK 207
H ++ H GE ++ + K+
Sbjct: 69 HNLKYHPGEENFKLTMVKR 87
Score = 37.8 bits (87), Expect = 6e-04
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 184 SSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRI-HSG---EKPYQCKLCLLRFSQ 239
+ + E Y C+ C D + T H+ H Y C C +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 240 SGNLNRH-MRVHGSQYN 255
L+ H ++ H + N
Sbjct: 63 YDALSEHNLKYHPGEEN 79
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 43.2 bits (101), Expect = 1e-06
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
+PY C C++ F+D L +H+RIH+GEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 35.9 bits (82), Expect = 5e-04
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
KPY C C + F+ L HVR H+GEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 31.3 bits (70), Expect = 0.026
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGER 198
KP+ C C R+F+ ++ H+R H+GE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.1 bits (67), Expect = 0.070
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 226 KPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
KPY C C +F+ G L RH+R+H +
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 25.9 bits (56), Expect = 1.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 122 GKTYARPSTLKTHLRTHSGEK 142
+ +A P L+ H+R H+GEK
Sbjct: 10 QRQFADPGALQRHVRIHTGEK 30
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 42.3 bits (100), Expect = 3e-06
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGER 198
+ F C +C R F++ + H R+H+ E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 38.5 bits (90), Expect = 6e-05
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
+ + CE C ++F++ +L H R+H+ EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 38.1 bits (89), Expect = 9e-05
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
R + C +C +AF+ L +H R H+ EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 31.5 bits (72), Expect = 0.018
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 226 KPYQCKLCLLRFSQSGNLNRHMRVH 250
+ + C++C F++ +L RH R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 28.1 bits (63), Expect = 0.28
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 122 GKTYARPSTLKTHLRTHSGEK 142
+ +AR LK H R+H+ EK
Sbjct: 9 TRAFARQEHLKRHYRSHTNEK 29
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 42.0 bits (99), Expect = 5e-06
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 139 SGEKPYRC--EDCNKSFSQAANLTAHVRTHSGEK 170
+K + C + C K + + ++L AH+R H+GE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 38.9 bits (91), Expect = 5e-05
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 167 SGEKPFRCPI--CDRRFSQSSSVTTHMRTHSGER 198
+K C I C + + ++S + H+R H+GER
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 37.3 bits (87), Expect = 2e-04
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 195 SGERPYRCRL--CKKAFSDSSTLTKHLRIHSGEK 226
++ + C + C K + +S L HLR H+GE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 35.8 bits (83), Expect = 6e-04
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 122 GKTYARPSTLKTHLRTHSGEK 142
GK Y + S L+ HLR H+GE+
Sbjct: 17 GKVYGKTSHLRAHLRWHTGER 37
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 41.1 bits (97), Expect = 8e-06
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 142 KPYRC--EDCNKSFSQAANLTAHVRTHSGEK 170
+P+ C C K F+++ L H RTH+GEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 41.1 bits (97), Expect = 8e-06
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 170 KPFRC--PICDRRFSQSSSVTTHMRTHSGER 198
+PF C C +RF++S + H RTH+GE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 39.9 bits (94), Expect = 2e-05
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 198 RPYRC--RLCKKAFSDSSTLTKHLRIHSGEK 226
RP+ C C K F+ S L +H R H+GEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 34.1 bits (79), Expect = 0.002
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 226 KPYQC--KLCLLRFSQSGNLNRHMRVH 250
+P+ C C RF++S L RH R H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 29.5 bits (67), Expect = 0.11
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 122 GKTYARPSTLKTHLRTHSGEK 142
GK + R L+ H RTH+GEK
Sbjct: 11 GKRFTRSDELQRHKRTHTGEK 31
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 39.7 bits (92), Expect = 3e-05
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 222 HSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SG++P+ C++CL F+ N RH++VH
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 39.0 bits (90), Expect = 4e-05
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 194 HSGERPYRCRLCKKAFSDSSTLTKHLRIHS 223
SG+RP+ CR+C AF+ + +HL++H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 35.9 bits (82), Expect = 5e-04
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 138 HSGEKPYRCEDCNKSFSQAANLTAHVRTHS 167
SG++P+ C C +F+ AN H++ H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 32.4 bits (73), Expect = 0.011
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 166 HSGEKPFRCPICDRRFSQSSSVTTHMRTHS 195
SG++PF C IC F+ ++ H++ H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 38.0 bits (87), Expect = 1e-04
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 166 HSGEKPFRCPICDRRFSQSSSVTTHMRTHSG 196
SGEKP+ CP+C RF + ++ H+R+H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 34.9 bits (79), Expect = 0.002
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 194 HSGERPYRCRLCKKAFSDSSTLTKHLRIHSG 224
SGE+PY C +C F ++ H+R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 34.1 bits (77), Expect = 0.003
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 138 HSGEKPYRCEDCNKSFSQAANLTAHVRTHSG 168
SGEKPY C C F + ++ HVR+H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 34.1 bits (77), Expect = 0.003
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 222 HSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
SGEKPY C +C LRF + ++ H+R H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 37.4 bits (86), Expect = 2e-04
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
KP +C C K+F+QA++L AHVR H+GEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 34.4 bits (78), Expect = 0.002
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGER 198
KP +C +C + F+Q+SS+ H+R H+GE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 33.6 bits (76), Expect = 0.004
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
+P +C +C KAF+ +S+L H+R H+GEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 25.1 bits (54), Expect = 4.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 120 IPGKTYARPSTLKTHLRTHSGEK 142
+ GK + + S+L H+R H+GEK
Sbjct: 7 MCGKAFTQASSLIAHVRQHTGEK 29
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 34.5 bits (79), Expect = 0.002
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 172 FRCPICDRRFSQSSSVTTHMRTHSGERPYR 201
F CP C +RF +S ++ H+ H R
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEER 32
Score = 29.1 bits (65), Expect = 0.15
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 144 YRCEDCNKSFSQAANLTAHVRTHSGEKPFR 173
+ C +C K F ++ +L+ H+ H R
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEER 32
Score = 28.0 bits (62), Expect = 0.43
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 200 YRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
+ C C K F S L+KH+ +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 25.6 bits (56), Expect = 2.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 228 YQCKLCLLRFSQSGNLNRHMRVHGSQ 253
+ C C RF +S +L++H+ +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELL 28
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 33.7 bits (77), Expect = 0.004
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 172 FRCPICDRRFSQSSSVTTHMRTHSGER 198
F CP C +RF +S +T H+ H ++
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 28.7 bits (64), Expect = 0.17
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 144 YRCEDCNKSFSQAANLTAHVRTHSGEK 170
+ C +C K F ++ +LT H+ H +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 28.3 bits (63), Expect = 0.26
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 200 YRCRLCKKAFSDSSTLTKHLRIHSGEK 226
+ C C K F S LT H+ +H +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 26.0 bits (57), Expect = 1.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 228 YQCKLCLLRFSQSGNLNRHMRVHGSQ 253
+ C C RF +S +L H+ +H ++
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 34.1 bits (78), Expect = 0.004
Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 141 EKPYRC--EDCNKSFSQAANLTAHVRTHSGEK 170
+K + C C K+F + N+ +H++TH ++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 31.8 bits (72), Expect = 0.021
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 169 EKPFRCPI--CDRRFSQSSSVTTHMRTHSGER 198
+K F C C + F + ++ +H++TH +R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.0 bits (57), Expect = 2.2
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 122 GKTYARPSTLKTHLRTHSGEK 142
KT+ R +++H++TH ++
Sbjct: 27 TKTFKRRYNIRSHIQTHLEDR 47
Score = 24.4 bits (53), Expect = 8.7
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 225 EKPYQCKL--CLLRFSQSGNLNRHMRVH 250
+K ++C C F + N+ H++ H
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 33.7 bits (76), Expect = 0.004
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
KPY+C C+ + + ANL H+R H+GEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 32.1 bits (72), Expect = 0.013
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGER 198
KP++CP C + +++ H+R H+GE+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.8 bits (66), Expect = 0.10
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
+PY+C C A + + L HLR H+GEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 26.7 bits (58), Expect = 1.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 226 KPYQCKLCLLRFSQSGNLNRHMRVH 250
KPY+C C + NLN H+R H
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKH 32
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.0 bits (77), Expect = 0.004
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 193 THSGERPYRCRLCKKAFSDSSTLTKHLRIHS 223
+ E+ ++C C+K FS S LT+H RIH+
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 32.9 bits (74), Expect = 0.011
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 137 THSGEKPYRCEDCNKSFSQAANLTAHVRTHS 167
+ EK ++C C K+FS + LT H R H+
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 31.7 bits (71), Expect = 0.023
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 165 THSGEKPFRCPICDRRFSQSSSVTTHMRTHS 195
+ EK F+C C++ FS S +T H R H+
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 28.3 bits (62), Expect = 0.36
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 222 HSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
EK ++C C FS S L +H R+H
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 36.7 bits (84), Expect = 0.005
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 4/49 (8%)
Query: 122 GKTYAR----PSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTH 166
+ Y + S H GEK + E + +L +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 35.6 bits (81), Expect = 0.011
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 179 RRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIH 222
+R S T H GE+ + ++ + L + +
Sbjct: 188 KRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 33.6 bits (76), Expect = 0.062
Identities = 8/53 (15%), Positives = 16/53 (30%)
Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTH 194
+ + ED K + T H GEK + ++ + +
Sbjct: 179 RVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 32.5 bits (73), Expect = 0.13
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 207 KAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 250
K S T H + GEK Q + +L + +
Sbjct: 188 KRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.5 bits (73), Expect = 0.009
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
S K + CE CNK F +L AH+R H+ EK
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 30.2 bits (67), Expect = 0.068
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 200 YRCRLCKKAFSDSSTLTKHLRIHSGEK 226
+ C C K F +L HLRIH+ EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.5 bits (60), Expect = 0.54
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
S K F C C++ F S+ H+R H+ E+
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 24.4 bits (52), Expect = 7.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 123 KTYARPSTLKTHLRTHSGEK 142
K + +L+ HLR H+ EK
Sbjct: 17 KVFKFKHSLQAHLRIHTNEK 36
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (74), Expect = 0.010
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
S EK ++C +C + F Q +L H H G+K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 31.3 bits (70), Expect = 0.028
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
S E+ ++CR C + F +L +H +H G+K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 28.2 bits (62), Expect = 0.37
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
S EK +C C F Q S+ H H G++
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 27.1 bits (59), Expect = 1.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMRVHGSQYNMLP 258
S EK +QC+ C F Q +L H +H Q N P
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGP 43
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 36.3 bits (83), Expect = 0.013
Identities = 26/187 (13%), Positives = 48/187 (25%), Gaps = 18/187 (9%)
Query: 64 HPGQMTPPPYGDPGAPYQVGAPQQFPTASLSYTVHPHQSSRGRPLNSGIRLILIQFIPGK 123
+ + P DP A Q P Q T + G+P + + +
Sbjct: 81 NDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYP 140
Query: 124 T--------YARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHV--RTHSGEKPFR 173
TL E+ + + + T + + S K +
Sbjct: 141 IDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSK 200
Query: 174 CPICD--RRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCK 231
P R + + RCR C+ S + + + ++C
Sbjct: 201 LPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCR------SYMNPFVTFIEQGRRWRCN 254
Query: 232 LCLLRFS 238
C L
Sbjct: 255 FCRLAND 261
Score = 27.1 bits (59), Expect = 8.5
Identities = 20/155 (12%), Positives = 33/155 (21%), Gaps = 21/155 (13%)
Query: 63 VHPGQMTPPPYGDPGAPYQVGAPQQFPTASLSYTVHPHQSSRGRPLNSGIRLILIQFIPG 122
+ PPP D P P ++ + S + +
Sbjct: 141 IDLLTELPPPITDLTLPP----PPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLL 196
Query: 123 KTYARPSTLKTHL--RTHSGEKP---------YRCEDCNKSFSQAANLTAHVRTHSGEKP 171
K P L + P RC C + + V +
Sbjct: 197 KKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCR------SYMNPFVTFIEQGRR 250
Query: 172 FRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCK 206
+RC C + R R +
Sbjct: 251 WRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKC 285
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 33.0 bits (75), Expect = 0.014
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 129 STLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVT 188
S H T + C+ C+ S L H + G + C C R +
Sbjct: 3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNV-LVKDLK 59
Query: 189 THMRTHSGE 197
TH E
Sbjct: 60 THPEVCGRE 68
Score = 31.5 bits (71), Expect = 0.052
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 184 SSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNL 243
SS + H T R C+ C S L +H + G + C C R +L
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHED-YCGARTELCGNC-GRNVLVKDL 58
Query: 244 NRHMRVHGSQ 253
H V G +
Sbjct: 59 KTHPEVCGRE 68
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 30.9 bits (69), Expect = 0.030
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSG 196
+P+ C +C +RFS + TH R H+G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 29.0 bits (64), Expect = 0.16
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSG 224
RPY C +C K FS + H R+H+G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.5 bits (60), Expect = 0.47
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSG 168
+PY C C K FS + H R H+G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.7 bits (58), Expect = 0.94
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 226 KPYQCKLCLLRFSQSGNLNRHMRVH 250
+PY C +C RFS + H RVH
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 30.4 bits (68), Expect = 0.046
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 142 KPYRCEDCNKSFSQAANLTAHVRTH 166
KPY CE C K F Q++ L H+R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 28.9 bits (64), Expect = 0.17
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 170 KPFRCPICDRRFSQSSSVTTHMRTH 194
KP+ C C +RF QSS + H+R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 27.0 bits (59), Expect = 0.73
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 226 KPYQCKLCLLRFSQSGNLNRHMRVH 250
KPY C+ C RF QS L H+R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 26.6 bits (58), Expect = 1.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIH 222
+PY C C K F SS L H+R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 30.1 bits (67), Expect = 0.057
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 200 YRCRLCKKAFSDSSTLTKHLRIHS 223
Y+C LC+++F + S L++H R+H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
Score = 26.7 bits (58), Expect = 0.97
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 172 FRCPICDRRFSQSSSVTTHMRTHS 195
++C +C+R F + S+++ H R H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
Score = 26.7 bits (58), Expect = 1.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 228 YQCKLCLLRFSQSGNLNRHMRVH 250
Y+C LC F + L+RH RVH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 24.0 bits (51), Expect = 8.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 144 YRCEDCNKSFSQAANLTAHVRTHS 167
Y+C C +SF + + L+ H R H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 30.1 bits (68), Expect = 0.063
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGER 198
+ + C C R F + ++ HM H +R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 27.8 bits (62), Expect = 0.44
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 198 RPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
R Y C CK+ F + L H+ +H ++
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 25.5 bits (56), Expect = 3.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 226 KPYQCKLCLLRFSQSGNLNRHMRVH 250
+ Y C C F + L HM VH
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 29.7 bits (66), Expect = 0.087
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTH 194
EKPF C +C +R S++T H+RTH
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
Score = 29.7 bits (66), Expect = 0.087
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 197 ERPYRCRLCKKAFSDSSTLTKHLRIH 222
E+P+ C LC + D S +TKHLR H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
Score = 27.0 bits (59), Expect = 0.68
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 225 EKPYQCKLCLLRFSQSGNLNRHMRVHG 251
EKP+ C LC R + +H+R HG
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTHG 27
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 29.4 bits (66), Expect = 0.091
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 170 KPFRCPICDRRFSQSSSVTTHMRT-HSG 196
K + C +C+R F++ + H + HSG
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 26.0 bits (57), Expect = 2.0
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 226 KPYQCKLCLLRFSQSGNLNRHMR-VHGS 252
K Y C LC F++ L RH + +H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 25.2 bits (55), Expect = 3.2
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 198 RPYRCRLCKKAFSDSSTLTKHLR-IHSG 224
+ Y C LC +AF+ L +H + IHSG
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 24.8 bits (54), Expect = 4.8
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 142 KPYRCEDCNKSFSQAANLTAHVRT-HSG 168
K Y C CN++F++ L H + HSG
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.5 bits (70), Expect = 0.094
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 164 RTHSGEKPFRCPICDRRFSQS-SSVTTHMRT-HSGERPYRCRLCKKAFSDSSTLTKHLRI 221
R CP C+ ++ + HM + +C+ C+K F + L H
Sbjct: 17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Query: 222 HSGEKP 227
KP
Sbjct: 77 EHSAKP 82
Score = 28.8 bits (63), Expect = 0.79
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 131 LKTHLRT-HSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKP 171
LK H+ + +C+ C K F A L H KP
Sbjct: 41 LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 33.0 bits (75), Expect = 0.12
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSS 28
KKKKKK+KK+G +
Sbjct: 87 DGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 28.3 bits (63), Expect = 4.0
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
+ KKKKK+KKK
Sbjct: 86 EDGDGDGDGATGKKKKKKKKK 106
Score = 27.2 bits (60), Expect = 8.2
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
+ KKKK+KKK
Sbjct: 85 DEDGDGDGDGATGKKKKKKKK 105
Score = 27.2 bits (60), Expect = 9.0
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSECPGSGMGKPPHDVAD 53
KKK++KKKK K +++ + +S +++ + E + D D
Sbjct: 35 AKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDED 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.12
Identities = 59/384 (15%), Positives = 94/384 (24%), Gaps = 181/384 (47%)
Query: 49 HDVADVLLSLKHAVVHPGQMTPPPYGD--------------PGAPYQVGAPQQFPTASLS 94
A+ L L + + P Y + P P
Sbjct: 189 KFSAETLSELIRTTLD----AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP----- 239
Query: 95 YTVHPHQSSRGRPLNSGIRLI-LIQF--------IPGKTYARPSTLKTHLRTHSGEKPYR 145
LI +IQ + G T P L+++L+ +G
Sbjct: 240 -------------------LIGVIQLAHYVVTAKLLGFT---PGELRSYLKGATG----- 272
Query: 146 C------------EDCNKSFSQAANLTAHVRTHSGEKPFRC----PICDRRFSQ-SSSVT 188
D +SF + V G RC P S S+
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG---VRCYEAYPNTSLPPSILEDSLE 329
Query: 189 ------THMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIH------------SGEKPYQ- 229
+ M + S + ++ +S L ++ SG P Q
Sbjct: 330 NNEGVPSPMLSISNLT--QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG--PPQS 385
Query: 230 -CKLCL-LR--------------FSQSGNLNRHMRVHGSQYNMLPVI------YM----- 262
L L LR FS+ R ++ +++ LPV +
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSE-----RKLKFS-NRF--LPVASPFHSHLLVPASD 437
Query: 263 ---------------------------GVN-QVCS-----NIVDQRRGIYVVEAV-WT-- 286
G + +V S IVD I + V W
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC---I-IRLPVKWETT 493
Query: 287 --VQSTWI-D-GRSTMCGHSFIVK 306
++T I D G G +
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTH 517
Score = 27.7 bits (61), Expect = 6.2
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 278 IYVVE-AVWTVQSTW--IDGRSTMCGHS 302
+ ++E A + + I +T GHS
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHS 1763
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 30.6 bits (68), Expect = 0.16
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 170 KPFRCPICDRRFSQS-SSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKP 227
CP C ++ + HM + + C C K + + H+ + P
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 30.6 bits (68), Expect = 0.18
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 142 KPYRCEDCNK-SFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERP 199
C C L H+ ++ F C C ++ + + H+ + P
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 27.9 bits (61), Expect = 1.4
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 131 LKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPF 172
LK H+ ++ + C C K A + HV + P
Sbjct: 51 LKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.1 bits (64), Expect = 0.18
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
+ + C+ C K F SS L +H +H+GE
Sbjct: 8 AAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 27.9 bits (61), Expect = 0.48
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGE 169
+ + C++C K F ++ L H H+GE
Sbjct: 8 AAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 25.2 bits (54), Expect = 5.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
+ + C C + F SS + H H+GE
Sbjct: 8 AAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 28.8 bits (64), Expect = 0.18
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 141 EKPYRCE--DCNKSFSQAANLTAHVRTHS 167
++PY C+ C+K+F + +L H ++H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 28.0 bits (62), Expect = 0.30
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 197 ERPYRCRL--CKKAFSDSSTLTKHLRIHS 223
+RPY C C KAF + L +H + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 26.9 bits (59), Expect = 1.0
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 169 EKPFRC--PICDRRFSQSSSVTTHMRTHS 195
++P+ C P CD+ F ++ + H ++H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 24.2 bits (52), Expect = 8.9
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 225 EKPYQCKL--CLLRFSQSGNLNRHMRVHGSQ 253
++PY C C F ++ +L RH + H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 28.5 bits (63), Expect = 0.20
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 172 FRCPICDRRFSQSSSVTTHMRT 193
F CP C +RF +S +++ H++T
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
Score = 25.4 bits (55), Expect = 3.3
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 144 YRCEDCNKSFSQAANLTAHVRT 165
+ C C K F ++ L+ H++T
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 31.7 bits (71), Expect = 0.31
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 106 RPLNSGIRLILIQFIPGKTYARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRT 165
RP + I + P + P ++K + Y C CN FS + L+ H+R+
Sbjct: 81 RPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNP--SSYVCNVCNARFSTMSALSEHLRS 138
Query: 166 -HS 167
H
Sbjct: 139 DHR 141
Score = 29.8 bits (66), Expect = 1.6
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 170 KPFRCPICDRRFSQSSSVTTHMRT-HS 195
+ C +C+ RFS S+++ H+R+ H
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHR 141
Score = 27.5 bits (60), Expect = 7.0
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 200 YRCRLCKKAFSDSSTLTKHLRI-HS 223
Y C +C FS S L++HLR H
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHR 141
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 30.3 bits (68), Expect = 0.34
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 168 GEKPFRCPICDRRFSQSSSVTTHMRTH 194
G + C CDR F+ + +H +
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLE 38
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.2 bits (62), Expect = 0.39
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 228 YQCKLCLLRFSQSGNLNRHMRVHGSQY 254
Y C +C +F + +RHM VHG ++
Sbjct: 10 YDCHICERKFKNELDRDRHMLVHGDKW 36
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_X 2go5_4 2j37_4
Length = 152
Score = 30.2 bits (68), Expect = 0.40
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKI 33
KK K ++ K K K G +KI
Sbjct: 6 AVKKADGKTQQALKVAKAVKSGS--IKRKSKKI 36
Score = 29.1 bits (65), Expect = 1.1
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 3 KKKKKKKKKKKKKKKRKKKGILANSSSKEK 32
K KK K ++ + K + + S ++
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKS 33
Score = 29.1 bits (65), Expect = 1.2
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 2 KKKKKKKKKKKKKKKKRKKKGILANSSSKEK 32
K KK K ++ K K + K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSK 34
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 0.41
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGER 198
S KPF+C +C+ S++ HM HS E+
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 26.8 bits (58), Expect = 1.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGEK 170
S KP++C C + +NL AH+ HS EK
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 25.6 bits (55), Expect = 3.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 195 SGERPYRCRLCKKAFSDSSTLTKHLRIHSGEK 226
S +P++C LC+ A S L H+ HS EK
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_e
Length = 244
Score = 31.0 bits (69), Expect = 0.44
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSEC 39
+KK+K +K K K I A + + +
Sbjct: 24 WAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDK 62
Score = 28.6 bits (63), Expect = 2.5
Identities = 9/65 (13%), Positives = 20/65 (30%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSECPGSGMGKPPHDVADVLLSLKH 60
+K K + K + ++ A +++ + G P V+
Sbjct: 35 EKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKPLFVVRIRGI 94
Query: 61 AVVHP 65
+HP
Sbjct: 95 NAMHP 99
Score = 28.3 bits (62), Expect = 3.2
Identities = 8/38 (21%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSE 38
K+++++ +KK+K +K + + + + I R+E
Sbjct: 16 LKRRREEVWAAEKKQKVAAEK--IKAAENTKVIYARAE 51
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.50
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 15/53 (28%)
Query: 1 KKKKKKKKKKKKKKKKKRKK--------------KGILANSSSKEK-IQDRSE 38
++ K +++ ++K KK K + N + + Q
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 30.5 bits (69), Expect = 0.68
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 3 KKKKKKKKKKKKKKKRKKKGILANSSSKEKIQD 35
+++ KK+KK+ + KKK + + + ++Q+
Sbjct: 476 IEQEPSKKQKKQHEGSKKKAAARDVTLENRLQN 508
Score = 28.1 bits (63), Expect = 4.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQD 35
+ KK+KK+ + KKK + L N ++ D
Sbjct: 479 EPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTD 513
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 27.9 bits (62), Expect = 0.72
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 131 LKTHLRTHSGEKPYRCEDCNKSFSQ--AANLTAHVRTHSGEKPFRCPICD 178
++T R + ++C C+ +F+ A L + FRC C
Sbjct: 2 IETDERDSTNRASFKCPVCSSTFTDLEANQLFDPMTGT-----FRCTFCH 46
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 27.1 bits (59), Expect = 0.76
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 171 PFRCPICDRRFSQSSSVTTHMRTHS 195
P+RCP+C +S+ HMR HS
Sbjct: 3 PYRCPLCRAGCPSLASMQAHMRGHS 27
Score = 25.2 bits (54), Expect = 3.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 199 PYRCRLCKKAFSDSSTLTKHLRIHS 223
PYRC LC+ +++ H+R HS
Sbjct: 3 PYRCPLCRAGCPSLASMQAHMRGHS 27
Score = 24.4 bits (52), Expect = 6.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 143 PYRCEDCNKSFSQAANLTAHVRTHS 167
PYRC C A++ AH+R HS
Sbjct: 3 PYRCPLCRAGCPSLASMQAHMRGHS 27
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q
3u5g_Z
Length = 108
Score = 28.8 bits (64), Expect = 0.97
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQ 34
K++ K K +K K + S K++ Q
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQ 37
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 29.7 bits (67), Expect = 1.1
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
+K ++ K K+K +K++ +K+
Sbjct: 320 EKMRRAKLAKEKAEKERLEKQ 340
Score = 29.3 bits (66), Expect = 1.7
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
++K ++ K K+K +K+R +K
Sbjct: 319 EEKMRRAKLAKEKAEKERLEK 339
Score = 28.2 bits (63), Expect = 3.9
Identities = 5/21 (23%), Positives = 14/21 (66%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
++ ++K ++ K K+K K++
Sbjct: 316 RETEEKMRRAKLAKEKAEKER 336
Score = 27.4 bits (61), Expect = 5.7
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
++K ++ K K+K +K + +
Sbjct: 318 TEEKMRRAKLAKEKAEKERLE 338
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 26.4 bits (57), Expect = 1.4
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 167 SGEKPFRCPICDRRFSQSSSVTTHMRTHSGE 197
S + + CP+C++ FS+ + +H++T+ E
Sbjct: 5 SSGRSYSCPVCEKSFSEDRLIKSHIKTNHPE 35
Score = 24.4 bits (52), Expect = 7.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 139 SGEKPYRCEDCNKSFSQAANLTAHVRTHSGE 169
S + Y C C KSFS+ + +H++T+ E
Sbjct: 5 SSGRSYSCPVCEKSFSEDRLIKSHIKTNHPE 35
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 26.7 bits (58), Expect = 1.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 202 CRLCKKAFSDSSTLTKHLR 220
CR CKK +SD L KH+R
Sbjct: 12 CRFCKKKYSDVKNLIKHIR 30
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 29.2 bits (65), Expect = 1.4
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 2 KKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDR 36
K KK+ K+ KK L K + +R
Sbjct: 253 MAKSTKKEPATHKRYNLKK---LTYEQRKASLVER 284
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 29.4 bits (65), Expect = 1.4
Identities = 10/53 (18%), Positives = 14/53 (26%), Gaps = 2/53 (3%)
Query: 153 FSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLC 205
+S E CP C + + +G R C LC
Sbjct: 164 WSHWLLGLEEGAVVETESRTLCPACGSP--PMAGMIRQGGKETGLRYLSCSLC 214
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 29.4 bits (65), Expect = 1.4
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 2 KKKKKKKKKKKKKKKKRKKKGILANSSSKE 31
+ ++ +K K+KR + KE
Sbjct: 25 QVAAERAARKAANKEKRAIILERNAAYQKE 54
Score = 28.6 bits (63), Expect = 2.2
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGIL 24
++ ++ +K K K+ IL
Sbjct: 22 TAEQVAAERAARKAANKEKRAIIL 45
Score = 27.5 bits (60), Expect = 5.4
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
+ +K K+K+ +R
Sbjct: 30 RAARKAANKEKRAIILERNAA 50
Score = 27.5 bits (60), Expect = 5.5
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
++ +K K+K+ +
Sbjct: 26 VAAERAARKAANKEKRAIILE 46
Score = 27.1 bits (59), Expect = 7.9
Identities = 4/36 (11%), Positives = 13/36 (36%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDR 36
++ +K K+K+ + + E+ +
Sbjct: 29 ERAARKAANKEKRAIILERNAAYQKEYETAERNIIQ 64
Score = 27.1 bits (59), Expect = 8.3
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
++ +K K+K+ ++
Sbjct: 27 AAERAARKAANKEKRAIILER 47
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 29.0 bits (64), Expect = 1.7
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKE 31
K K +++K + K+++ + A + E
Sbjct: 21 KAKAEQRKASSAQMKQRKAEWISKAQKYAAE 51
Score = 28.2 bits (62), Expect = 2.7
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGIL 24
+K K +++K + K++K +
Sbjct: 19 LRKAKAEQRKASSAQMKQRKAEWI 42
Score = 27.8 bits (61), Expect = 4.1
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 3 KKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSE 38
KK + +K +K K +++K K + +++
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQ 46
Score = 27.1 bits (59), Expect = 6.4
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDR 36
++K + K++K + K + A + EK
Sbjct: 26 QRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVD 61
Score = 26.7 bits (58), Expect = 9.0
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
K +K K +++K + +++K
Sbjct: 18 KLRKAKAEQRKASSAQMKQRK 38
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 29.1 bits (64), Expect = 1.7
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSEC 39
K K+ +KK K +K ++K I + K +
Sbjct: 50 LKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYR 88
Score = 28.7 bits (63), Expect = 2.5
Identities = 11/65 (16%), Positives = 23/65 (35%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSECPGSGMGKPPHDVADVLLSLKH 60
K +K ++K +K K K ++ ++ + G+ +A V+
Sbjct: 61 LKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGI 120
Query: 61 AVVHP 65
V P
Sbjct: 121 NGVSP 125
Score = 27.5 bits (60), Expect = 5.1
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDR 36
KK K +K ++K K K + + R
Sbjct: 57 KKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIR 92
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.44.1.3
Length = 93
Score = 27.5 bits (60), Expect = 1.9
Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 14/68 (20%)
Query: 165 THSGEKPFRCPICDRR-----FSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHL 219
+ P C IC R F Q SV +H C C + + T +
Sbjct: 9 PMANSGPLCCTICHERLEDTHFVQCPSVPSHK---------FCFPCSRESIKAQGATGEV 59
Query: 220 RIHSGEKP 227
SGEK
Sbjct: 60 YCPSGEKC 67
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
single-stranded DNA, isomerase/DNA complex; HET: DNA;
2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Length = 659
Score = 29.1 bits (66), Expect = 1.9
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILAN 26
KK +K+ KK G +A+
Sbjct: 629 KKAAPRKRSAKKSPPADEVGSGAIAH 654
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 28.9 bits (64), Expect = 2.0
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 3 KKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDR 36
+KK KK+ KKK+ R K ++ + K+++ +
Sbjct: 253 YEKKPKKEVKKKRWNRPK---MSLAQKKDRVAQK 283
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 28.9 bits (64), Expect = 2.0
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDR 36
K KK K K+ KK K L + K++++ +
Sbjct: 261 VKSTKKNDKPKRDHKKFYPTK--LTAAQRKDRVKTK 294
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 28.8 bits (64), Expect = 2.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
KK+ KK K KK K + ++K
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQK 134
Score = 26.9 bits (59), Expect = 7.2
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEK 32
K+ KK K KK K + +K + S+
Sbjct: 115 KRDKKNKSKKSKPAQGGEQKLISEEDDSAGSP 146
Score = 26.9 bits (59), Expect = 8.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 11 KKKKKKKRKKKGILANSSSKEKIQDRSECPGSGM 44
KK+ KK + KK A ++ I + + GS M
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSAGSPM 147
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 29.2 bits (65), Expect = 2.1
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILA 25
+ K K+ ++ I+
Sbjct: 15 ISSRSNGKNPFKRSTGRKVSNVIII 39
Score = 28.8 bits (64), Expect = 2.2
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILA 25
+ K K+ RK ++
Sbjct: 14 DISSRSNGKNPFKRSTGRKVSNVII 38
Score = 28.8 bits (64), Expect = 2.5
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGIL 24
+ K K+ +K I+
Sbjct: 17 SRSNGKNPFKRSTGRKVSNVIIII 40
Score = 28.4 bits (63), Expect = 3.2
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILA 25
+ K K+ +K IL
Sbjct: 18 RSNGKNPFKRSTGRKVSNVIIIILC 42
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 28.9 bits (64), Expect = 2.2
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDR 36
K +KK K++ + K+ ++ L+ ++ +
Sbjct: 254 KPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAK 289
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 27.6 bits (61), Expect = 2.3
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGI 23
+ K K+ K K G+
Sbjct: 8 AAVAEGKSKQDASPKPYAVKYGL 30
Score = 26.5 bits (58), Expect = 6.6
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 2 KKKKKKKKKKKKKKKKRKKKGIL 24
K+ + K K+ K +
Sbjct: 4 TKEAAAVAEGKSKQDASPKPYAV 26
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 27.7 bits (61), Expect = 2.4
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQ 34
K K K K ++KK + KEK+
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVN 38
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.6 bits (55), Expect = 3.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 223 SGEKPYQCKLCLLRFSQSGNLNRHMR-VHGS 252
SG Y C LCL +F S L H+R VHG+
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVHGA 33
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.4 bits (64), Expect = 3.2
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQD 35
K+ K KK K K K + + K +
Sbjct: 446 KELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGSRH 480
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 26.9 bits (59), Expect = 3.2
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKG 22
++K+K+ KK K+K+ K+KK+
Sbjct: 81 ERKRKESPKKNKEKRMKKKKRL 102
Score = 26.5 bits (58), Expect = 4.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
+K+ KK K+K+ KKKKR +
Sbjct: 84 RKESPKKNKEKRMKKKKRLNR 104
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 26.8 bits (58), Expect = 3.3
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 136 RTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRR 180
Y+C+ C+ A LT+H+ H+ E R +RR
Sbjct: 18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERR 62
Score = 26.8 bits (58), Expect = 3.5
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 192 RTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGE 225
Y+C+ C ++ LT HL IH+ E
Sbjct: 18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEE 51
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 27.4 bits (60), Expect = 3.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
KK K +K K KK+K+K
Sbjct: 10 AKKAGKAQKNITKTDKKKKRK 30
Score = 26.6 bits (58), Expect = 5.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
K KK K +K K +KKK
Sbjct: 8 KAAKKAGKAQKNITKTDKKKK 28
Score = 26.6 bits (58), Expect = 6.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
K K +K K KKKKRK+K
Sbjct: 12 KAGKAQKNITKTDKKKKRKRK 32
Score = 26.6 bits (58), Expect = 6.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
KK K +K K KKK++K+
Sbjct: 11 KKAGKAQKNITKTDKKKKRKR 31
Score = 26.2 bits (57), Expect = 8.2
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
K KK K +K K KK
Sbjct: 6 SGKAAKKAGKAQKNITKTDKK 26
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 28.3 bits (63), Expect = 3.7
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 2 KKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSECPGSGMGKPPHDVADVLLS 57
K+ +K+++ ++K ++ K A EK Q R + V D LL
Sbjct: 380 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSLLE 435
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 140
Score = 27.3 bits (61), Expect = 3.8
Identities = 3/24 (12%), Positives = 11/24 (45%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGIL 24
++ + +K ++ KG++
Sbjct: 9 GSRRNGRISSRKSASARKIPKGVI 32
Score = 26.5 bits (59), Expect = 8.2
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGI 23
K ++ + +K + I
Sbjct: 5 IPKIGSRRNGRISSRKSASARKI 27
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 26.8 bits (59), Expect = 3.9
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPI--CDRRFSQSSSVT 188
+KP + + C ++ + A + +K CP C + S +
Sbjct: 18 KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 25.2 bits (54), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 226 KPYQCKLCLLRFSQSGNLNRHMRVHGSQ 253
K YQC+ C R + S NL H++ S+
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSK 28
Score = 24.8 bits (53), Expect = 5.4
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 170 KPFRCPICDRRFSQSSSVTTHMRT-HSGER 198
K ++C C+ R + SS++ TH++T HS E+
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
Score = 24.4 bits (52), Expect = 7.3
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 142 KPYRCEDCNKSFSQAANLTAHVRT-HSGEK 170
K Y+C+ C + ++NL H++T HS EK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.1 bits (54), Expect = 4.5
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 167 SGEKPFRCPICDRRFSQSSS-VTTHMRTHSG 196
S + +CP CD F ++ S + H+ H G
Sbjct: 5 SSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG 35
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 26.8 bits (58), Expect = 4.7
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 142 KPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGE---- 197
+C+ C+ + AH ++ R + + + S + E
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQ-GEDSVPAKKFKAAPAEISDG 89
Query: 198 --RPYRCRLCKKAFSDSSTLTKHLR 220
R C +C FS H
Sbjct: 90 EDRSKCCPVCNMTFSSPVVAESHYI 114
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 26.3 bits (58), Expect = 4.7
Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 16/73 (21%)
Query: 145 RCEDCNKSFS----QAANLTAHVRTHSGEKPFRCPICDRRFSQSSSVTTHMRTHSGERPY 200
RC C++ A T H F C +C F VT + +
Sbjct: 17 RCFSCDQFIEGEVVSALGKTYHP-DC-----FVCAVCRLPFPPGDRVTFN------GKEC 64
Query: 201 RCRLCKKAFSDSS 213
C+ C S S
Sbjct: 65 MCQKCSLPVSVSG 77
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 27.9 bits (61), Expect = 4.7
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKG 22
KK K +K K K G
Sbjct: 293 TGKKNSKMTAAQKALAKVDKSG 314
Score = 27.9 bits (61), Expect = 4.9
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGIL-ANSSSKEKI 33
K K K KK K +K + + S + I
Sbjct: 285 KFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSI 318
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA,
isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo
sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A*
1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A*
1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 27.8 bits (61), Expect = 4.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
K K K K KK + K+KK
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKP 21
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 27.1 bits (59), Expect = 4.9
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSECPGSGMGK 46
++ K+KK +KK+ RK +G ++ K + + + G+ GK
Sbjct: 112 RELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGK 157
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 27.9 bits (61), Expect = 5.0
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSECP 40
KK KK KK KK KK ++ +K ++
Sbjct: 375 KKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTT 414
Score = 27.5 bits (60), Expect = 6.0
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEK 32
+KK KK KK KK KK + +K
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKAAATKKPAADK 405
Score = 27.1 bits (59), Expect = 8.6
Identities = 13/48 (27%), Positives = 18/48 (37%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSECPGSGMGKPP 48
++KK KK KK KK K A + + P + KP
Sbjct: 373 RRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKPA 420
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 26.5 bits (58), Expect = 5.1
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
+++K++ K K+ R+ +
Sbjct: 92 QEEKERINAKNILKRNNRRCQ 112
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 27.9 bits (61), Expect = 5.3
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDR 36
K K++ K +K K KK ++ + ++
Sbjct: 352 KAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEA 387
Score = 27.1 bits (59), Expect = 7.8
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEK 32
K K++ K +K K KKG A ++ K
Sbjct: 351 SKAKRQATLKANRKAAKTHKKGSQAWIAAFNK 382
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 26.5 bits (59), Expect = 5.4
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
K+ +K++ KK K
Sbjct: 89 MKRVGDYYVFEKRESKKSKGG 109
Score = 25.8 bits (57), Expect = 8.9
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKG 22
+ K+ +K++ K+ K G
Sbjct: 88 EMKRVGDYYVFEKRESKKSKGG 109
Score = 25.8 bits (57), Expect = 9.1
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEK 32
K+ + + K+ +K S E
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG, unknown FUN; 2.61A {Listeria innocua}
PDB: 3nro_A
Length = 321
Score = 27.4 bits (61), Expect = 5.6
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILA 25
+ + + K+KK K K +
Sbjct: 2 TETRTETKQKKPSTFTKVMKIASVT 26
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 26.2 bits (58), Expect = 5.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 2 KKKKKKKKKKKKKKKKRKKK 21
K K KK+ +++ RK K
Sbjct: 2 STKNAKPKKEAQRRPSRKAK 21
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 26.1 bits (58), Expect = 5.8
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 1 KKKKKKKKKKKKKKK 15
++ KK+ +KKK
Sbjct: 2 VTPREPKKRTTRKKK 16
Score = 26.1 bits (58), Expect = 5.8
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 2 KKKKKKKKKKKKKKK 16
++ KK+ +KKK
Sbjct: 2 VTPREPKKRTTRKKK 16
Score = 26.1 bits (58), Expect = 5.8
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 3 KKKKKKKKKKKKKKK 17
++ KK+ +KKK
Sbjct: 2 VTPREPKKRTTRKKK 16
Score = 25.7 bits (57), Expect = 8.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 7 KKKKKKKKKKKRKKK 21
++ KK+ RKKK
Sbjct: 2 VTPREPKKRTTRKKK 16
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 25.9 bits (57), Expect = 5.8
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 17/88 (19%)
Query: 122 GKTYARPSTLKTHLRTHSGEKPYRCEDCNK----SFSQAANLTAHVRTHSGEKPFRCPIC 177
G + + + ++ +G++ C CN+ F A + H F C C
Sbjct: 4 GSSGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPE-E-----FNCAHC 57
Query: 178 DRRFSQSSSVTTHMRTHSGERPYRCRLC 205
+ V G Y C LC
Sbjct: 58 KNTMAYIGFV-----EEKG-ALY-CELC 78
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.3 bits (60), Expect = 5.9
Identities = 7/35 (20%), Positives = 9/35 (25%), Gaps = 11/35 (31%)
Query: 173 RCPICDRRFSQSSSVTTHMRT--HSGERPYRCRLC 205
CP C + G+ C LC
Sbjct: 23 TCPEC-------KVYPPKIVERFSEGD--VVCALC 48
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 27.0 bits (59), Expect = 5.9
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 165 THSGEKPFRCPIC 177
H GE +CPIC
Sbjct: 180 IHKGEDFEKCPIC 192
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 27.2 bits (59), Expect = 6.0
Identities = 4/37 (10%), Positives = 15/37 (40%)
Query: 2 KKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSE 38
+K+K ++ K+ +++R + + +
Sbjct: 139 VRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEA 175
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 27.7 bits (60), Expect = 6.0
Identities = 10/85 (11%), Positives = 17/85 (20%), Gaps = 6/85 (7%)
Query: 125 YARPSTLKTHLRTHSGEKPYRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPICDRRFSQS 184
Y + RC C + + V + +RC C
Sbjct: 94 YQHLYDDIDPPPLNEDGLIVRCRRCR------SYMNPFVTFIEQGRRWRCNFCRLANDVP 147
Query: 185 SSVTTHMRTHSGERPYRCRLCKKAF 209
+ R R +
Sbjct: 148 MQMDQSDPNDPKSRYDRNEIKCAVM 172
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle
transport, cytoplasm, endoplasmic reticulum, ER-golgi
transport, golgi apparatus; 2.35A {Homo sapiens}
Length = 766
Score = 27.6 bits (60), Expect = 6.3
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 171 PFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
P I + ++ H P RC CK + + ++ G + +QC
Sbjct: 66 PLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCK------AYMCPFMQFIEGGRRFQC 119
Query: 231 KLCLLRF 237
C
Sbjct: 120 CFCSCIN 126
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 25.4 bits (55), Expect = 6.4
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 147 EDCNKSFSQAANLTAHV-RTHSGEK------PFRC--PICDRRFSQSSSVTTHMRTH 194
++C +S S +L H+ + H + P C CD ++S+ H+
Sbjct: 7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ 63
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 27.5 bits (60), Expect = 6.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKG 22
K KK K ++KKKK+ + K G
Sbjct: 80 PKPKKPKPQEKKKKQPAKTKPG 101
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 27.2 bits (61), Expect = 6.4
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 145 RCEDCNKSFSQAANLTAHVRTHSGEKPFRCP 175
C CNK + + P CP
Sbjct: 156 VCCTCNKIVKLNKIMLQKTSHFMHQLPPECP 186
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE]
hydrogenase maturation, zinc-finger, nickel binding,
metal-binding; HET: FME; 2.30A {Pyrococcus
kodakaraensis} PDB: 3a44_A*
Length = 139
Score = 26.5 bits (58), Expect = 6.5
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 9/43 (20%)
Query: 145 RCEDCNKSFS---------QAANLTAHVRTHSGEKPFRCPICD 178
+C +CN + + H CP C
Sbjct: 72 KCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCG 114
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 266
Score = 27.2 bits (59), Expect = 6.6
Identities = 13/72 (18%), Positives = 24/72 (33%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSECPGSGMGKPPHDVADVLLSLKH 60
K KK KK++ +K L K + P + + + L +
Sbjct: 8 KGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQR 67
Query: 61 AVVHPGQMTPPP 72
A+++ PP
Sbjct: 68 AILYKRLKVPPA 79
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 24.7 bits (53), Expect = 6.7
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 169 EKPFRCPICDRRFSQSSSVTTHMRTHS 195
+KP+ C IC +R+ ++ H HS
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH-YAHS 30
Score = 24.4 bits (52), Expect = 9.6
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 141 EKPYRCEDCNKSFSQAANLTAHVRTHS 167
+KPY C+ C K + L+ H HS
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH-YAHS 30
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 27.0 bits (59), Expect = 6.7
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 165 THSGEKPFRCPICD 178
T E P CP+C
Sbjct: 147 TAVDEAPEYCPVCG 160
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport
signal, disease mutation, endoplasmic reticulum,
ER-golgi transport, golgi apparatus, membrane; 2.70A
{Homo sapiens} PDB: 3eg9_B
Length = 770
Score = 27.5 bits (60), Expect = 6.7
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 171 PFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQC 230
P I S+ ++ H P RC CK + + ++ G + YQC
Sbjct: 70 PLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCK------AYMCPFMQFIEGGRRYQC 123
Query: 231 KLCLLRFS 238
C
Sbjct: 124 GFCNCVND 131
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 27.6 bits (61), Expect = 6.8
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEK 32
K+K+ + K K+K K A + K
Sbjct: 348 SLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 27.5 bits (61), Expect = 6.9
Identities = 8/52 (15%), Positives = 15/52 (28%)
Query: 2 KKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSECPGSGMGKPPHDVAD 53
K K+ ++K + KK+ E + S P +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTP 679
Score = 27.5 bits (61), Expect = 7.3
Identities = 5/42 (11%), Positives = 11/42 (26%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSECPGS 42
K+ ++K + KK+ K +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPK 673
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics,
protein initiative; 2.04A {Lactobacillus salivarius}
Length = 177
Score = 26.9 bits (60), Expect = 6.9
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 2 KKKKKKKKKKKKKKKKRKKKGILAN 26
+K + + K+ K K L
Sbjct: 124 EKLANRYSHDSYRNKQNKIKQSLLT 148
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 26.6 bits (58), Expect = 7.0
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQ 34
++ K++ KK K +KK KK + + ++ K
Sbjct: 111 ALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGG 144
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 26.3 bits (57), Expect = 7.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 1 KKKKKKKKKKKKKKKKKRKKK 21
K KK K +KK KKRKK
Sbjct: 13 KGSKKAVTKTQKKGDKKRKKS 33
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 26.6 bits (58), Expect = 7.6
Identities = 10/64 (15%), Positives = 16/64 (25%), Gaps = 3/64 (4%)
Query: 170 KPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQ 229
CP C R F + + H+ R C C + + H +
Sbjct: 109 ALMDCPQCQRPFQKFH-INIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQN-CPLALEH 165
Query: 230 CKLC 233
Sbjct: 166 HHHH 169
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 26.6 bits (58), Expect = 7.7
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQ 34
+ K+ KK K+ KK A + + K +
Sbjct: 108 AIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQK 141
Score = 26.2 bits (57), Expect = 9.6
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQDRSECPGSGMGKP 47
+++ + K+ KK K+ KK + A + + + + P
Sbjct: 105 REQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAP 151
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic
transcription factor, zinc binding protein, ring finger;
NMR {Homo sapiens} SCOP: g.49.1.2
Length = 59
Score = 24.8 bits (54), Expect = 7.8
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 6/34 (17%)
Query: 144 YRCEDCNKSFSQAANLTAHVRTHSGEKPFRCPIC 177
Y C C F ++ H HS CP C
Sbjct: 31 YVCAVCQNVFCVDCDVFVHDSLHS------CPGC 58
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 26.4 bits (58), Expect = 7.9
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKI 33
K+ K + K K K KKG +S +K K
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKG---SSITKHKT 31
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer,
thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A
{Pseudomonas aeruginosa} PDB: 2plq_A
Length = 341
Score = 27.1 bits (60), Expect = 8.1
Identities = 11/63 (17%), Positives = 23/63 (36%)
Query: 243 LNRHMRVHGSQYNMLPVIYMGVNQVCSNIVDQRRGIYVVEAVWTVQSTWIDGRSTMCGHS 302
+ R + G++ + YM + ++ + V + DG + GHS
Sbjct: 174 IWRDCAMKGAELIVRCQGYMYPAKDQQVMMAKAMAWANNCYVAVANAAGFDGVYSYFGHS 233
Query: 303 FIV 305
I+
Sbjct: 234 AII 236
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 26.6 bits (59), Expect = 8.4
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 1 KKKKKKKKKKKKKKKKKRKK 20
K +++ +KK + K
Sbjct: 139 KIVTERRAEKKADSRVTYSK 158
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 26.3 bits (57), Expect = 8.5
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGILANSSSKEKIQ 34
+KK K+ K + K+ K +K+K+
Sbjct: 7 AGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKVN 40
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 26.3 bits (58), Expect = 8.6
Identities = 3/22 (13%), Positives = 5/22 (22%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKG 22
KK +K+
Sbjct: 3 PKKTAPVQKEVISYGPPNVGAN 24
Score = 26.3 bits (58), Expect = 9.0
Identities = 3/23 (13%), Positives = 5/23 (21%)
Query: 1 KKKKKKKKKKKKKKKKKRKKKGI 23
KK +K+
Sbjct: 4 KKTAPVQKEVISYGPPNVGANEN 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.406
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,582,725
Number of extensions: 264122
Number of successful extensions: 4593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3551
Number of HSP's successfully gapped: 1054
Length of query: 311
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 218
Effective length of database: 4,105,140
Effective search space: 894920520
Effective search space used: 894920520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)