BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8052
         (67 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
          Length = 500

 Score = 26.6 bits (57), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 19  VVLEIERSIISQMLRKSVEAKDW-LHGIEPRNVRAVMKRIIEELTL 63
           V LE   + +  + R   E K W L   EP   RAV+ R++E L +
Sbjct: 402 VALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRI 447


>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
           Mutant From Thermus Thermophilus
 pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
           Synthetase Y225f Mutant Obtained In The Presence Of
           Peg6000
          Length = 500

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 19  VVLEIERSIISQMLRKSVEAKDW-LHGIEPRNVRAVMKRIIEELTL 63
           V LE   + +  + R   E K W L   EP   RAV+ R++E L +
Sbjct: 402 VALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRI 447


>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
           Mutant From Thermus Thermophilus
          Length = 502

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 19  VVLEIERSIISQMLRKSVEAKDW-LHGIEPRNVRAVMKRIIEELTL 63
           V LE   + +  + R   E K W L   EP   RAV+ R++E L +
Sbjct: 402 VALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRI 447


>pdb|2I9I|A Chain A, Crystal Structure Of Helicobacter Pylori Protein Hp0492
          Length = 254

 Score = 25.8 bits (55), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 21  LEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELT 62
           L    SII + L K+ E  D +H I  R    VMK+ + ELT
Sbjct: 182 LNSSNSIIHEYLEKNKE--DAIHKILNRMYAVVMKKAVTELT 221


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,576,765
Number of Sequences: 62578
Number of extensions: 38683
Number of successful extensions: 124
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 6
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)