Query psy8052
Match_columns 67
No_of_seqs 38 out of 40
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 17:10:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8052.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8052hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cnt1_ a.26.1.1 (1:) Ciliary 40.9 8.2 0.0006 24.6 2.4 24 4-27 12-35 (177)
2 d1d5ya1 a.4.1.8 (A:3-56) Rob t 32.2 15 0.0011 17.9 2.2 32 2-33 22-53 (54)
3 d2acva1 c.87.1.10 (A:3-463) Tr 30.8 24 0.0018 21.7 3.4 46 10-63 414-461 (461)
4 d2qsba1 a.29.14.1 (A:2-86) Unc 30.8 13 0.00095 21.5 2.0 19 44-62 22-40 (85)
5 d2pcsa1 d.129.3.10 (A:1-147) H 28.4 33 0.0024 18.3 3.4 25 6-30 122-146 (147)
6 d2qzga1 a.29.14.1 (A:4-91) Unc 24.7 17 0.0012 21.2 1.6 19 44-62 24-42 (88)
7 d1qc7a_ a.118.14.1 (A:) FliG { 17.0 85 0.0062 17.3 4.7 57 6-65 28-84 (101)
8 d1j77a_ a.132.1.2 (A:) Heme ox 15.2 1.2E+02 0.0085 18.0 6.0 54 11-64 96-156 (200)
9 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 12.9 84 0.0061 18.9 3.1 43 12-62 35-77 (146)
10 d1r4ga_ a.8.5.1 (A:) RNA polym 12.6 85 0.0062 16.5 2.6 21 44-64 31-51 (53)
No 1
>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.93 E-value=8.2 Score=24.62 Aligned_cols=24 Identities=13% Similarity=-0.121 Sum_probs=19.7
Q ss_pred hHHHHhhchHHHHHHHHHHHHhHH
Q psy8052 4 SLSLLFGSSPDFLGVVVLEIERSI 27 (67)
Q Consensus 4 ~~~~~~~~aaq~Ll~~yv~~qG~~ 27 (67)
+|....+.-+..|++.|+..||..
T Consensus 12 ~La~~m~k~~~~LL~~Y~~~QG~~ 35 (177)
T d1cnt1_ 12 WLARKIRSDLTALTESYVKHQGLN 35 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhHHHHHHHHHHhcCCC
Confidence 456677888999999999999964
No 2
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.24 E-value=15 Score=17.94 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=27.7
Q ss_pred hhhHHHHhhchHHHHHHHHHHHHhHHHHHHHH
Q psy8052 2 VTSLSLLFGSSPDFLGVVVLEIERSIISQMLR 33 (67)
Q Consensus 2 ~~~~~~~~~~aaq~Ll~~yv~~qG~~lsqmlr 33 (67)
+..|+..|+.+...|-+.|-+.-|....+-||
T Consensus 22 l~~lA~~~~~S~~~l~r~Fk~~~g~tp~~yir 53 (54)
T d1d5ya1 22 LDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIR 53 (54)
T ss_dssp CHHHHTTTSSCHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHh
Confidence 35678889999999999999999999988876
No 3
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]}
Probab=30.82 E-value=24 Score=21.74 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=28.7
Q ss_pred hchHHHHHH--HHHHHHhHHHHHHHHHHHhhccccccCCCchHHHHHHHHHHHHhh
Q psy8052 10 GSSPDFLGV--VVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTL 63 (67)
Q Consensus 10 ~~aaq~Ll~--~yv~~qG~~lsqmlrkSVe~rDWl~~~EPR~VRav~krvveel~a 63 (67)
.++-+.+++ ...+..=..|++++|++|+- ==+-+..++.+||||+.
T Consensus 414 ~~a~~~vl~~d~~~r~~a~~l~~~~r~a~~~--------gg~s~~~~~~~~~~~~~ 461 (461)
T d2acva1 414 EKGLKDLMDKDSIVHKKVQEMKEMSRNAVVD--------GGSSLISVGKLIDDITG 461 (461)
T ss_dssp HHHHHHHTCTTCTHHHHHHHHHHHHHHHTST--------TSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHhcC
Confidence 344445552 32456666788888887432 12356678899999863
No 4
>d2qsba1 a.29.14.1 (A:2-86) Uncharacterized protein Ta0600 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=30.79 E-value=13 Score=21.52 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=16.6
Q ss_pred cCCCchHHHHHHHHHHHHh
Q psy8052 44 GIEPRNVRAVMKRIIEELT 62 (67)
Q Consensus 44 ~~EPR~VRav~krvveel~ 62 (67)
..-||++|.++....+.|.
T Consensus 22 ~sVPRNIRr~a~e~~~~L~ 40 (85)
T d2qsba1 22 ITVPKNVRKVAQDSKAKLS 40 (85)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHH
Confidence 6789999999999888874
No 5
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}
Probab=28.41 E-value=33 Score=18.34 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=18.2
Q ss_pred HHHhhchHHHHHHHHHHHHhHHHHH
Q psy8052 6 SLLFGSSPDFLGVVVLEIERSIISQ 30 (67)
Q Consensus 6 ~~~~~~aaq~Ll~~yv~~qG~~lsq 30 (67)
+.+|...++++++.|++-=..++++
T Consensus 122 ~~li~~~~~~~~~~f~~~~~~~l~~ 146 (147)
T d2pcsa1 122 QRMLGGVAKLLISDFFKKIQKEIAK 146 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578888888888888765555554
No 6
>d2qzga1 a.29.14.1 (A:4-91) Uncharacterized protein MMP1188 {Methanococcus maripaludis [TaxId: 39152]}
Probab=24.74 E-value=17 Score=21.15 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=16.0
Q ss_pred cCCCchHHHHHHHHHHHHh
Q psy8052 44 GIEPRNVRAVMKRIIEELT 62 (67)
Q Consensus 44 ~~EPR~VRav~krvveel~ 62 (67)
..-||++|.++....+.|.
T Consensus 24 ~sVPRNIRr~a~~~~~~L~ 42 (88)
T d2qzga1 24 TTVPRNIRAAADNAKNALH 42 (88)
T ss_dssp TTSCHHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHHHH
Confidence 6789999999988887664
No 7
>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=17.00 E-value=85 Score=17.28 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=44.4
Q ss_pred HHHhhchHHHHHHHHHHHHhHHHHHHHHHHHhhccccccCCCchHHHHHHHHHHHHhhhh
Q psy8052 6 SLLFGSSPDFLGVVVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELTLVD 65 (67)
Q Consensus 6 ~~~~~~aaq~Ll~~yv~~qG~~lsqmlrkSVe~rDWl~~~EPR~VRav~krvveel~aiD 65 (67)
..-+..+.+.+.++...--+.+.+++|+--++. +....++.|..+.+.++.-+..+.
T Consensus 28 ~~ALkga~~~~~~~il~nms~R~~~~l~ee~~~---~g~v~~~dve~Aq~~Iv~~~r~l~ 84 (101)
T d1qc7a_ 28 ALALKGASDELKEKIFKNMSKRAAALLKDELEY---MGPVRLKDVEEAQQKIINIIRRLE 84 (101)
T ss_dssp HHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344566778888888888899999999988876 355678888888888888766543
No 8
>d1j77a_ a.132.1.2 (A:) Heme oxygenase HemO (PigA) {Neisseria meningitidis [TaxId: 487]}
Probab=15.20 E-value=1.2e+02 Score=18.02 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHhhcccccc-------CCCchHHHHHHHHHHHHhhh
Q psy8052 11 SSPDFLGVVVLEIERSIISQMLRKSVEAKDWLHG-------IEPRNVRAVMKRIIEELTLV 64 (67)
Q Consensus 11 ~aaq~Ll~~yv~~qG~~lsqmlrkSVe~rDWl~~-------~EPR~VRav~krvveel~ai 64 (67)
+.++.+--.||-...+.=+|+|+|-+..-.++.. ..+.+.-...|++.+.|.++
T Consensus 96 ~~~~~lg~~YV~eGs~lGGq~i~r~~~~~~~~~~~~~~f~~~~~~~~~~~w~~f~~~L~~~ 156 (200)
T d1j77a_ 96 AGNKAIGWLYCAEGSNLGAAFLFKHAQKLDYNGEHGARHLAPHPDGRGKHWRAFVEHLNAL 156 (200)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCBTTBBCGGGSCCTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCcccchhhcCCccccHHHHHHHHHHHHcC
Confidence 4567788899955444446888888766555442 23444545566666666554
No 9
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=12.94 E-value=84 Score=18.86 Aligned_cols=43 Identities=7% Similarity=0.040 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhhccccccCCCchHHHHHHHHHHHHh
Q psy8052 12 SPDFLGVVVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEELT 62 (67)
Q Consensus 12 aaq~Ll~~yv~~qG~~lsqmlrkSVe~rDWl~~~EPR~VRav~krvveel~ 62 (67)
...++++...+.+......|+.+- ...|++--..+++|.+|+.
T Consensus 35 tik~~v~~i~~kh~~~F~~ml~~L--------~i~~~~~~~~f~~V~~elF 77 (146)
T d1k3ka_ 35 PIKLYITGLMRDKESLFEAMLANV--------RFHSTTGIDQLGLSMLQVS 77 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTS--------CCCHHHHHHHHHTHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHHH
Confidence 467788888888888888888554 4556666677888888875
No 10
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]}
Probab=12.55 E-value=85 Score=16.52 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.6
Q ss_pred cCCCchHHHHHHHHHHHHhhh
Q psy8052 44 GIEPRNVRAVMKRIIEELTLV 64 (67)
Q Consensus 44 ~~EPR~VRav~krvveel~ai 64 (67)
|..-+-|..+|..+=||+.++
T Consensus 31 Cktd~EV~evMdlf~EDi~sl 51 (53)
T d1r4ga_ 31 CKTDQEVKAVMELVEEDIESL 51 (53)
T ss_dssp CCSSHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHh
Confidence 777889999999999999875
Done!