RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8052
         (67 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 36.0 bits (82), Expect = 3e-04
 Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 19/67 (28%)

Query: 5   LSLLFGSSPDFLGVVVLEIERSIISQMLRKSVEAKDW------LHGI------EPRNVRA 52
           LSL++                 +++++ + S+  K        +  I      +  N  A
Sbjct: 392 LSLIWFDVIK-------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 53  VMKRIIE 59
           + + I++
Sbjct: 445 LHRSIVD 451


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.4 bits (55), Expect = 1.7
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 11  SSP-----DFLGVVVLEIERSIISQM---LRKSVEA--KDWLHGIEPRNVRAVMKRIIEE 60
           ++P      FLG V   +E S + Q    L   +      +L G    ++ A+  ++++E
Sbjct: 55  TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG---NDIHALAAKLLQE 111


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.137    0.373 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,050,333
Number of extensions: 49905
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 8
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)