RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8052
         (67 letters)



>d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 165

 Score = 22.9 bits (49), Expect = 3.3
 Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 5/45 (11%)

Query: 16 LGVVVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEE 60
          L +         ++++   +         I+P  V  V    I  
Sbjct: 31 LPIEDSGRVEQQLAKLGEDARS-----QHIDPDYVTRVFDDQIRA 70


>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
          Length = 443

 Score = 22.0 bits (46), Expect = 8.6
 Identities = 6/43 (13%), Positives = 19/43 (44%)

Query: 19  VVLEIERSIISQMLRKSVEAKDWLHGIEPRNVRAVMKRIIEEL 61
           V +      + ++   +    +    I  R +  VM+R+++++
Sbjct: 364 VNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKI 406


>d1pv0a_ a.2.12.1 (A:) Sporulation inhibitor Sda {Bacillus
          subtilis [TaxId: 1423]}
          Length = 46

 Score = 21.0 bits (44), Expect = 9.4
 Identities = 6/24 (25%), Positives = 14/24 (58%)

Query: 12 SPDFLGVVVLEIERSIISQMLRKS 35
          + DF+ ++  EI+R  +  ++  S
Sbjct: 22 NRDFIELIENEIKRRSLGHIISVS 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.373 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 248,370
Number of extensions: 8736
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 5
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)