RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8053
(492 letters)
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C,
catalytic domain. The protein architecture and deduced
catalytic mechanism of PP2C phosphatases are similar to
the PP1, PP2A, PP2B family of protein Ser/Thr
phosphatases, with which PP2C shares no sequence
similarity.
Length = 252
Score = 115 bits (290), Expect = 2e-29
Identities = 76/294 (25%), Positives = 104/294 (35%), Gaps = 110/294 (37%)
Query: 129 SNQLPSNKPIEDTRCEAKCLLTTGVLLGVFDGHGGAACAQVLSKRLFDYIAATLLPDQLI 188
S+ KP+ED L +G GVFDGHGG+ A+ LSK L +
Sbjct: 14 SSMQGVRKPMEDAHVITPDLSDSGGFFGVFDGHGGSEAAKFLSKNLPEI----------- 62
Query: 189 SDCLARLESQEPIQLVESYNDKFDIVGELKQLYLNSFKSFLKQLLSSQKEQQFEMKHMLV 248
L + L +K++ +++ L
Sbjct: 63 ----------------------------------------LAEELIKEKDELEDVEEALR 82
Query: 249 NAFLSLDQHISQEAQLKQG---------GNHL---N---------------MKTLGHNTD 281
AFLS D+ I +E + G GN L N T H
Sbjct: 83 KAFLSTDEEILEELEALSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPS 142
Query: 282 NVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGDVRYKWSKELLQKYVVPHVGEQA 341
N E RI + R+ G LA RA GD K
Sbjct: 143 NEDERARIEAAGG------FVINGRVNGVLALSRAIGDFFLK------------------ 178
Query: 342 LAPNYFTPPYLTAQPDVIHYRLTPRDRFLILATDGLWDLLSPLQAVRLVGEHMS 395
PY++A+PDV LT +D FLILA+DGLWD+LS + V +V +H+S
Sbjct: 179 --------PYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLS 224
Score = 68.9 bits (169), Expect = 3e-13
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 15 AKADEGAVCCVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHNTDNVREVERI 74
+A G+ VA I G L+VAN GD +AV+ + A +++ +H N E RI
Sbjct: 96 LEALSGSTAVVALISGNKLYVANVGDSRAVLC--RNGK---AVQLTEDHKPSNEDERARI 150
Query: 75 LNEHPKNERDTVIRMERLLGQLAPLRAFGDV 105
+ R+ G LA RA GD
Sbjct: 151 EAAGG------FVINGRVNGVLALSRAIGDF 175
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic
domain; The protein architecture and deduced catalytic
mechanism of PP2C phosphatases are similar to the PP1,
PP2A, PP2B family of protein Ser/Thr phosphatases, with
which PP2C shares no sequence similarity.
Length = 254
Score = 102 bits (256), Expect = 1e-24
Identities = 69/307 (22%), Positives = 99/307 (32%), Gaps = 115/307 (37%)
Query: 124 VKSYDSNQLPSNKPIEDTRCEAKCLLTTGV-LLGVFDGHGGAACAQVLSKRLFDYIAATL 182
+ S++ K ED L L GVFDGHGG A + SK L
Sbjct: 1 FSAGVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLL-------- 52
Query: 183 LPDQLISDCLARLESQEPIQLVESYNDKFDIVGELKQLYLNSFKSFLKQLLSSQKEQQFE 242
+ L++L + + +
Sbjct: 53 ------------------------------------------VEELLEELEETLTLSEED 70
Query: 243 MKHMLVNAFLSLDQHISQEAQLKQGGN---------HLNMKTL-----G----------- 277
++ L AFL D+ I +EAQ + + L G
Sbjct: 71 IEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGE 130
Query: 278 -------HNTDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGDVRYKWSKELLQ 330
H N E ERI + + R+ G LA RA GD K
Sbjct: 131 AVQLTKDHKPVNEEERERIEKAGGR------VSNGRVPGVLAVTRALGDFDLK------- 177
Query: 331 KYVVPHVGEQALAPNYFTPPYLTAQPDVIHYRLTPRDRFLILATDGLWDLLSPLQAVRLV 390
P ++A+PDV +LT D FLILA+DGLWD+LS +AV +V
Sbjct: 178 -------------------PGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIV 218
Query: 391 GEHMSGK 397
++ +
Sbjct: 219 RSELAKE 225
Score = 73.5 bits (181), Expect = 1e-14
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 20 GAVCCVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHNTDNVREVERILNEHP 79
G VA I G L+VAN GD +AV+ N A +++ +H N E ERI
Sbjct: 100 GTTAVVALIRGNKLYVANVGDSRAVLC-----RNGEAVQLTKDHKPVNEEERERIEKAGG 154
Query: 80 KNERDTVIRMERLLGQLAPLRAFGD 104
+ + R+ G LA RA GD
Sbjct: 155 R------VSNGRVPGVLAVTRALGD 173
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C. Protein phosphatase 2C is
a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 252
Score = 82.8 bits (205), Expect = 6e-18
Identities = 43/132 (32%), Positives = 57/132 (43%), Gaps = 27/132 (20%)
Query: 264 LKQGGNHLNMKTLGHNTDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGDVRYK 323
L + GN + T H N E RI V R R+ G LA RAFGD K
Sbjct: 124 LCRNGNAIKQLTEDHKPSNEDERRRIRGAGG-----FVSRNGRVNGVLAVSRAFGDFELK 178
Query: 324 WSKELLQKYVVPHVGEQALAPNYFTPPYLTAQPDVIHYRLTPRDRFLILATDGLWDLLSP 383
P ++A+PDV +++T D FLILA+DGLWD+LS
Sbjct: 179 ----------------------KGKPQPVSAEPDVTSHKITESDEFLILASDGLWDVLSD 216
Query: 384 LQAVRLVGEHMS 395
+ V +V +S
Sbjct: 217 QEVVDIVRSELS 228
Score = 69.3 bits (170), Expect = 3e-13
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 13 RRAKADEGAVCCVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHNTDNVREVE 72
G+ VA I G L+VAN GD +AV+ N K+++ +H N E
Sbjct: 92 NHEDLSSGSTAVVALIRGQKLYVANVGDSRAVLC----RNGNAIKQLTEDHKPSNEDERR 147
Query: 73 RILNEHPKNERDTVIRMERLLGQLAPLRAFGDV 105
RI V R R+ G LA RAFGD
Sbjct: 148 RIRGAGG-----FVSRNGRVNGVLAVSRAFGDF 175
Score = 28.1 bits (63), Expect = 8.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 154 LLGVFDGHGGAACAQVLSKRL 174
VFDGHGG+ A+ K L
Sbjct: 36 FFAVFDGHGGSQAAKYAGKHL 56
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal
transduction mechanisms].
Length = 262
Score = 42.3 bits (100), Expect = 3e-04
Identities = 49/253 (19%), Positives = 80/253 (31%), Gaps = 80/253 (31%)
Query: 154 LLGVFDGHGGAACAQVLS-------KRLFDYIAATLLPDQLISDCLARLESQEPIQLVES 206
L V DG GG A +V S RLFD L ++ + + L +E I
Sbjct: 40 LFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSL-NESLEELL-----KEAILKA-- 91
Query: 207 YNDKFDIVGELKQLYLNSFKSFLKQLLSSQKEQQFEMKH----MLVNAFLSLDQHISQEA 262
N+ G+L + + + L + + + + + ++
Sbjct: 92 -NEAIAEEGQLNEDVRGMGTTLV---LLLIRGNKLYVANVGDSRAY---------LLRDG 138
Query: 263 QLKQGGNHLNMKTLGHNTDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGDVRY 322
+LKQ T H+ N E I+ R A RA GD
Sbjct: 139 ELKQ-------LTEDHSLVNRLEQRGIITPEE------ARSHPRRN---ALTRALGDFDL 182
Query: 323 KWSKELLQKYVVPHVGEQALAPNYFTPPYLTAQPDVIHYRLTPRDRFLILATDGLWDLLS 382
+PD+ L P FL+L +DGLWD++S
Sbjct: 183 -------------------------------LEPDITELELEP-GDFLLLCSDGLWDVVS 210
Query: 383 PLQAVRLVGEHMS 395
+ V ++ +
Sbjct: 211 DDEIVDILKNSET 223
Score = 39.6 bits (93), Expect = 0.002
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 20 GAVCCVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHNTDNVREVERILNEHP 79
G + I G L+VAN GD +A +L D K+++ +H+ N E I+
Sbjct: 109 GTTLVLLLIRGNKLYVANVGDSRAY--LLRDGE---LKQLTEDHSLVNRLEQRGIITPEE 163
Query: 80 KNERDTVIRMERLLGQLAPLRAFGDVTTILRTNEFSLEIEN 120
R A RA GD +L + LE+E
Sbjct: 164 ------ARSHPRR---NALTRALGD-FDLLEPDITELELEP 194
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional.
Length = 365
Score = 40.3 bits (94), Expect = 0.002
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 352 LTAQPDVIHYRLTPRDRFLILATDGLWDLLSPLQAV----RLVGEH 393
L+A+P+++ +LT D FLI+ DG+WD+ AV R + EH
Sbjct: 254 LSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEH 299
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional.
Length = 381
Score = 34.0 bits (78), Expect = 0.16
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 28/107 (26%)
Query: 275 TLGHNTDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGDVRYKW--SKELLQKY 332
T H +N E +RI + + R+ G LA RAFGD +K + + L++
Sbjct: 141 TEDHKPNNPGERQRIEACGGRVVSN------RVDGDLAVSRAFGDRSFKVKGTGDYLEQK 194
Query: 333 VVPHVGEQALAPNYFTPPYLTAQPDVIHYRLTPRDRFLILATDGLWD 379
V+ A PDV H D F+ILA DG+++
Sbjct: 195 VI-------------------AVPDVTHLTCQSND-FIILACDGVFE 221
Score = 30.9 bits (70), Expect = 1.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 154 LLGVFDGHGGAACAQVLSKRL 174
GVFDGH C+Q L++
Sbjct: 50 FFGVFDGHVNDECSQYLARAW 70
Score = 28.6 bits (64), Expect = 9.4
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 32 HLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHNTDNVREVERILNEHPKNERDTVIRMER 91
HL V N GD + ++ + + +H +N E +RI + + R
Sbjct: 118 HLQVGNVGDSRVLVCR-----DGKLVFATEDHKPNNPGERQRIEACGGRVVSN------R 166
Query: 92 LLGQLAPLRAFGD 104
+ G LA RAFGD
Sbjct: 167 VDGDLAVSRAFGD 179
>gnl|CDD|188496 TIGR03981, SAM_quin_mod, His-Xaa-Ser system putative quinone
modification maturase. One clue for the interpretation
of this protein family is homology to the MauG protein
(see TIGR03791) involved in the tryptophan
tryptophylquinone post-translational modification of
methylamine dehydrogenase light (beta) chain. The other
is occurrence only in a five gene context in which two
members are radical SAM proteins (TIGR03977 and
TIGR03978) also likely involved in post-translational
modification.
Length = 411
Score = 33.3 bits (76), Expect = 0.28
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 194 RLESQEPIQLVES--YNDKFDIVGELKQLYLNSFKS-FLKQLLSSQKEQQFEMKHMLV-- 248
S + LVES Y++K + +L Q L +F S +K+LL ++E E + +
Sbjct: 171 IYRSSRHLDLVESVYYDEKVNAANKLIQERLLTFNSEEVKELLKLKEEAGIETADLTLPN 230
Query: 249 --NAFLS-LDQHISQEAQLKQGGNHLNMKTLGHNTDNVREVER 288
NA S + +S E Q+ Q +L N + V++
Sbjct: 231 VGNALASFIAVKVSNECQVSQWEKYLA-----GNKPALSPVQK 268
>gnl|CDD|173947 cd08188, Fe-ADH4, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenase-like. Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde to
alcohol with NADP as cofactor. Its activity requires
iron ions. The protein structure represents a
dehydroquinate synthase-like fold and is belonged to the
alcohol dehydrogenase-like superfamily. They are
distinct from other alcohol dehydrogenases which contain
different protein domains. Proteins of this family have
not been characterized. Their specific function is
unknown.
Length = 377
Score = 31.4 bits (72), Expect = 1.1
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 15/81 (18%)
Query: 369 FLILATDGLWDLLSPLQAVRLVGEHMSGKVTLRPLQLPRKHMKLSEINELLIARQEGLSL 428
++ A+ L DL + L+A+RL+ + L P ++ E + +L + Q GL+
Sbjct: 200 YVSNASSPLTDLHA-LEAIRLIAAN------LPPAIANPTDLEARE-SMMLASLQAGLAF 251
Query: 429 KPLDSNA---ATHLLRHALGG 446
SNA A H + H+LGG
Sbjct: 252 ----SNAILGAVHAMAHSLGG 268
>gnl|CDD|220861 pfam10720, DUF2515, Protein of unknown function (DUF2515). This
family is conserved in Firmicutes. Several members are
annotated as YppC. The function is not known.
Length = 306
Score = 30.3 bits (69), Expect = 2.4
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 334 VPHVG-----EQAL--APNYFTPPYLTAQPDVIHYRLTPRDRF 369
PH G E L A ++P TA P V H RD F
Sbjct: 224 TPHTGSRFDYEPYLFGAKKLYSPALRTAYPIVKHEFDDKRDWF 266
>gnl|CDD|233406 TIGR01420, pilT_fam, pilus retraction protein PilT. This model
represents the PilT subfamily of proteins related to
GspE, a protein involved in type II secretion (also
called the General Secretion Pathway). PilT is an
apparent cytosolic ATPase associated with type IV pilus
systems. It is not required for pilin biogenesis, but is
required for twitching motility and social gliding
behaviors, shown in some species, powered by pilus
retraction. Members of this family may be found in some
species that type IV pili but have related structures
for DNA uptake and natural transformation [Cell
envelope, Surface structures, Cellular processes,
Chemotaxis and motility].
Length = 343
Score = 30.0 bits (68), Expect = 3.3
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 270 HLNMKTLGHNTDNVREVERILNEHPKNERDTV 301
HL TL H + +ERI++ P E++ +
Sbjct: 221 HLVFGTL-HTNSAAQTIERIIDVFPAEEQEQI 251
>gnl|CDD|238551 cd01131, PilT, Pilus retraction ATPase PilT. PilT is a nucleotide
binding protein responsible for the retraction of type
IV pili, likely by pili disassembly. This retraction
provides the force required for travel of bacteria in
low water environments by a mechanism known as twitching
motility.
Length = 198
Score = 29.2 bits (66), Expect = 3.4
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 270 HLNMKTLGHNTDNVREVERILNEHPKNERDTV 301
HL M TL H + ++RI++ P ERD +
Sbjct: 100 HLVMSTL-HTNSAAKTIDRIIDVFPAEERDQI 130
>gnl|CDD|107029 PHA01351, PHA01351, putative minor structural protein.
Length = 1070
Score = 29.9 bits (67), Expect = 4.2
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 202 QLVESYNDKFDIVGELKQLYLNSFKSFLKQLLSSQKEQQFEMKHMLVNAFLSLDQHISQE 261
+ YN + I +L KS L+Q KE + E+K + +N +L+ +Q I +E
Sbjct: 614 AFINFYNQELQI-----SAFLTILKSQLRQFQIDPKEAETELKKLNINEYLA-NQIIQEE 667
Query: 262 AQLKQGGNHLNM-----KTLGHNTDNV-REVERI 289
+ L++ KTL ++ + E+++I
Sbjct: 668 YNINIAKLQLSVLETIAKTLYYDQQQLSGELKKI 701
>gnl|CDD|131379 TIGR02326, transamin_PhnW, 2-aminoethylphosphonate--pyruvate
transaminase. Members of this family are
2-aminoethylphosphonate--pyruvate transaminase. This
enzyme acts on the most common type of naturally
occurring phosphonate. It interconverts
2-aminoethylphosphonate plus pyruvate with
2-phosphonoacetaldehyde plus alanine. The enzyme
phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually
encoded by an adjacent gene, then cleaves the C-P bond
of phosphonoacetaldehyde, adding water to yield
acetaldehyde plus inorganic phosphate. Species with this
pathway generally have an identified phosphonate ABC
transporter but do not also have the multisubunit C-P
lysase complex as found in Escherichia coli [Central
intermediary metabolism, Phosphorus compounds].
Length = 363
Score = 29.4 bits (66), Expect = 4.3
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 282 NVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGDVRYKWSKELL 329
+V EVE IL P ++ E G L P+ A + ++ K +
Sbjct: 116 DVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTI 163
>gnl|CDD|222308 pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C
is a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 211
Score = 28.8 bits (65), Expect = 4.5
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 335 PHVGEQALAPNYFTPPYLTAQPDVIHYRLT-PRDRFLILATDGLWDLLSP 383
P GE A + T P A + RLT L L TDGL D L
Sbjct: 135 PDSGEYANETTFLTSP--DALEEFRIRRLTLEPGDALALMTDGLSDSLVT 182
>gnl|CDD|235085 PRK02910, PRK02910, light-independent protochlorophyllide reductase
subunit B; Provisional.
Length = 519
Score = 29.5 bits (67), Expect = 5.1
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 247 LVNAFLSLDQHISQEAQLKQGGNHLNMKTLG-HNTDNVREVERILNEH 293
LV A + Q + N L LG H+ D++ E+ R+L
Sbjct: 140 LVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATL 187
>gnl|CDD|214354 CHL00074, rps14, ribosomal protein S14.
Length = 100
Score = 27.5 bits (62), Expect = 5.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 194 RLESQEPIQLVESYNDKFDIVGELKQLYLNSFKSFLK 230
R ++ I+ V S ++K++I G+L+ L NS + L
Sbjct: 24 RRSLKKEIKKVSSLSEKWEIHGKLQSLPRNSAPTRLH 60
>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large
subunit. Carbamoyl-phosphate synthase (CPSase)
catalyzes the first committed step in pyrimidine,
arginine, and urea biosynthesis. In general, it is a
glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II
in eukaryotes. An exception is the mammalian
mitochondrial urea-cycle form, CPSase I, in which the
glutamine amidotransferase domain active site Cys on the
small subunit has been lost, and the enzyme is
ammonia-dependent. In both CPSase I and the closely
related, glutamine-dependent CPSase III (allosterically
activated by acetyl-glutamate) demonstrated in some
other vertebrates, the small and large chain regions are
fused in a single polypeptide chain. This model
represents the large chain of glutamine-hydrolysing
carbamoyl-phosphate synthases, or the corresponding
regions of larger, multifunctional proteins, as found in
all domains of life, and CPSase I forms are considered
exceptions within the family. In several thermophilic
species (Methanobacterium thermoautotrophicum,
Methanococcus jannaschii, Aquifex aeolicus), the large
subunit appears split, at different points, into two
separate genes [Purines, pyrimidines, nucleosides, and
nucleotides, Pyrimidine ribonucleotide biosynthesis].
Length = 1050
Score = 29.2 bits (66), Expect = 5.8
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 412 LSEINELLIARQEGLSLKPLDSNAATHLLRHALGGTEYGIEHSKIAQLLSMPQEVVRLFR 471
L +I ++ +E +K + + LLR A + G ++IA+L+ + + VR R
Sbjct: 458 LHKIKNIVDLEEELEEVKLTELDPE--LLRRA---KKLGFSDAQIARLIGVTEAEVRKLR 512
Query: 472 DDITITVVY 480
++ I VY
Sbjct: 513 KELGIMPVY 521
>gnl|CDD|111000 pfam02057, Glyco_hydro_59, Glycosyl hydrolase family 59.
Length = 669
Score = 29.2 bits (65), Expect = 5.9
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 367 DRFLILATDGLWDLLSP--------LQAVRLVGEHMSGKVTLRPLQLPRKHMKLSE 414
R I+A+D LW+ +S + V ++G H G T++ +L K + SE
Sbjct: 203 QRVKIIASDNLWEPISASMLLDQELWKVVDVIGAHYPGTHTVKDAKLTGKKLWSSE 258
>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1066
Score = 29.3 bits (67), Expect = 6.2
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 407 RKHMKLSEINEL-------------LIARQEGLSLKPLDSNAATHLLRHALGGTEYGIEH 453
R+ + EI+EL ++ +E L L +A LLR A G
Sbjct: 441 RRGASVEEIHELTKIDPWFLEQIEEIVELEEELKENGLPLDAE--LLREA---KRLGFSD 495
Query: 454 SKIAQLLSMPQEVVRLFRDDITITVVY 480
++IA+LL + ++ VR R + I VY
Sbjct: 496 ARIAKLLGVTEDEVRKLRKALGIHPVY 522
>gnl|CDD|225364 COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 353
Score = 28.8 bits (65), Expect = 6.8
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 270 HLNMKTLGHNTDNVREVERILNEHPKNERDTV 301
HL TL H + ++RI++ P E+D V
Sbjct: 224 HLVFGTL-HTNSAAKTIDRIIDVFPAEEKDQV 254
>gnl|CDD|220492 pfam09960, DUF2194, Uncharacterized protein conserved in bacteria
(DUF2194). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 573
Score = 28.9 bits (65), Expect = 7.1
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 203 LVESYNDK----FDIVGELKQLYLNSFKSFLKQLLSSQKE 238
++E+YN+K F +Q + F F K+LL+S E
Sbjct: 295 VIENYNNKTTPPFSFF---EQKNTDEFIYFGKELLNSGGE 331
>gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional.
Length = 251
Score = 28.5 bits (64), Expect = 7.1
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 171 SKRLFDYIAATLLPDQLISDCLARLESQEPIQLVESYNDKFDI-------VGELKQLYLN 223
S+ L + IA LL ++R E++E +L E YN V EL+
Sbjct: 10 SQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELETN--- 66
Query: 224 SFKSFLKQLLSSQKEQQFEMKHMLVNA 250
++LSS +E H++ NA
Sbjct: 67 -----FNEILSSIQEDNVSSIHLINNA 88
>gnl|CDD|213655 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase,
prokaryotic clade. This clade of
hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found
in a limited spectrum of mostly gram-positive bacteria
which make isopentenyl pyrophosphate (IPP) via the
mevalonate pathway. This pathway is found primarily in
eukaryotes and archaea, but the bacterial homologs are
distinct, having aparrently diverged after being
laterally transferred from an early eukaryote. HMG-CoA
synthase is the first step in the pathway and joins
acetyl-CoA with acetoacetyl-CoA with the release of one
molecule of CoA. The Borellia sequence may have resulted
from a separate lateral transfer event.
Length = 379
Score = 28.6 bits (64), Expect = 8.2
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 15/50 (30%)
Query: 423 QEGLSLKPLD-------SNAATHLL--------RHALGGTEYGIEHSKIA 457
Q+ +++ P+D ++AA +L + GTE GI+ SK A
Sbjct: 37 QKKMAVPPIDEDIVTMAASAAKPILDRNDKQKIDMVIFGTESGIDQSKAA 86
>gnl|CDD|185644 PTZ00465, PTZ00465, rhoptry-associated protein 1 (RAP-1);
Provisional.
Length = 565
Score = 28.6 bits (63), Expect = 9.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 85 TVIRMERLLGQLAPLRAFGDVTTILRTNEFSLEIENHTSVKSYDSNQLPSN 135
+ R + +G LAP GD+T+ L T + + + +H + D + SN
Sbjct: 20 SAFRHNQRVGSLAPAEVVGDLTSTLETADTLMTLRDHMHNITKDMKHVLSN 70
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.391
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,119,682
Number of extensions: 2495821
Number of successful extensions: 2360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2347
Number of HSP's successfully gapped: 46
Length of query: 492
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 391
Effective length of database: 6,457,848
Effective search space: 2525018568
Effective search space used: 2525018568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)