RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8053
(492 letters)
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 318 bits (815), Expect = e-104
Identities = 162/450 (36%), Positives = 255/450 (56%), Gaps = 64/450 (14%)
Query: 104 DVTTILRTNEFSLEI-----ENHTSVKSYDSNQLPSNKPIEDTRCEAKCLLTTGVLLGVF 158
V +IL+ NE+S ++ +N +S+ +DSN+LP+N PIED R CL T G+LLGVF
Sbjct: 13 QVNSILKANEYSFKVPEFDGKNVSSILGFDSNRLPANAPIEDRRSATTCLQTRGMLLGVF 72
Query: 159 DGHGGAACAQVLSKRLFDYIAATLLPDQLISDCLARLESQEPIQLVESYNDKFD--IVGE 216
DGH G AC+Q +S+RLF YIA +LLP + + + +ES + + ++ + E
Sbjct: 73 DGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKE 132
Query: 217 LKQLYLNSFKSFLKQLLSSQK--EQQFEMKHMLVNAFLSLDQHISQEAQLKQGGNHLNMK 274
+LY N +++ ++L+ ++K L+NAF LD IS EAQ+ + LN
Sbjct: 133 ASKLYFNGLRTYWQELIDLNTGESADIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYL 192
Query: 275 TLG-----------------------------------------------HNTDNVREVE 287
L HN N RE++
Sbjct: 193 VLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELQ 252
Query: 288 RILNEHPKNERDTVIRMERLLGQLAPLRAFGDVRYKWSKELLQKYVVPHVGE-------Q 340
R+ EHPKNE +V++ +RLLG L P RAFGDV++KWS +L ++ + + +
Sbjct: 253 RLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTK 312
Query: 341 ALAPNYFTPPYLTAQPDVIHYRLTPRDRFLILATDGLWDLLSPLQAVRLVGEHMSGKVTL 400
+ PNY TPPYLTA+P+V ++RL P+D+FL+LATDGLW+ + VR+VGE+++G
Sbjct: 313 FIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQ 372
Query: 401 RPLQLPRKHMKLSEINELLIARQEGLSLKPLDSNAATHLLRHALGGTEYG-IEHSKIAQL 459
+P+ + + L +++ LL R+ +S D NAATHL+RHA+G E+G ++H +++++
Sbjct: 373 QPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKM 432
Query: 460 LSMPQEVVRLFRDDITITVVYFDSDYLRSP 489
LS+P+E+ R++RDDITI VV F+S + +
Sbjct: 433 LSLPEELARMYRDDITIIVVQFNSHVVGAY 462
Score = 123 bits (310), Expect = 7e-31
Identities = 49/101 (48%), Positives = 66/101 (65%)
Query: 5 SSHSIRASRRAKADEGAVCCVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHN 64
+ + A GA CVAH+DG LHVANTGD +A++GV +D +W A +S +HN
Sbjct: 185 PNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHN 244
Query: 65 TDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGDV 105
N RE++R+ EHPKNE +V++ +RLLG L P RAFGDV
Sbjct: 245 AQNERELQRLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDV 285
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 154 bits (390), Expect = 2e-42
Identities = 56/382 (14%), Positives = 114/382 (29%), Gaps = 67/382 (17%)
Query: 129 SNQLPSNKPIEDTRCEAKCLLTTGVLLGVFDGHGGAACAQVLSKRLFDYIAATLLPDQLI 188
+ + P ED+ + + L GVF+G+ G +++RL + L +
Sbjct: 40 DGKGTESHPPEDSWLKFRSE-NNCFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHA 98
Query: 189 SDCLARLESQEPIQLVESYNDKFD-IVGELKQLYLNSFKSFLKQLLSSQKEQQFEMKHML 247
+ R+ Q + S+ + D + E L + + L Q ++ E L
Sbjct: 99 EADVRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTL 158
Query: 248 VNAF---------LSLDQHI-------SQEAQLKQGGNHLNMKTL--GHNTDNVREVERI 289
+ L+ + ++ K + L + L H T+N E+ R+
Sbjct: 159 EREISGGAMAVVAVLLNNKLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRL 218
Query: 290 LNEHPKNERDTVIRMERLLGQLAPLRAFGDVRYKWSKELLQKYVVPHVGEQALAPNYFTP 349
+ I+ ++ R GD + K+ +
Sbjct: 219 SQLGLDAGK---IKQVGIICGQESTRRIGDYKVKYGY------------TDIDLLSAAKS 263
Query: 350 PYLTAQPDVIHY-RLTPRDRFLILATDGLWDLLSPLQAVRLVGEHMSGKVTLRPLQLPRK 408
+ A+P++ L FL+L ++GL+ L + ++ + K
Sbjct: 264 KPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMIDTE----FAK 319
Query: 409 HMKLSEINELLIARQEGLSLKPLDSNAATHLLRHALGGTEYGIEHSKIAQLLSMPQEVVR 468
L + + + +D H A GG
Sbjct: 320 QTSLDAVAQAV-----------VDRVKRIHSDTFASGGER----------------ARFC 352
Query: 469 LFRDDITITVVYFDSDYLRSPN 490
+D+T+ V F
Sbjct: 353 PRHEDMTLLVRNFGYPLGEMSQ 374
Score = 87.7 bits (217), Expect = 6e-19
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 17 ADEGAVCCVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHNTDNVREVERILN 76
GA+ VA + L+VAN G +A++ + + +++V+H T+N E+ R+
Sbjct: 162 ISGGAMAVVAVLLNNKLYVANVGTNRALLCK-STVDGLQVTQLNVDHTTENEDELFRLSQ 220
Query: 77 EHPKNERDTVIRMERLLGQLAPLRAFGD 104
+ I+ ++ R GD
Sbjct: 221 LGLDAGK---IKQVGIICGQESTRRIGD 245
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 132 bits (334), Expect = 7e-35
Identities = 59/406 (14%), Positives = 115/406 (28%), Gaps = 106/406 (26%)
Query: 121 HTSVKSYDSNQLPS-------NKPIEDTRCEAKCLLTTGVLLGVFDGHGGAACAQVLSKR 173
+ + NQ+ D +C T L + GH G A+ +
Sbjct: 13 NQTGVGEAINQIYKDDGRRCEGYESRDKKCLCISDNNTS-LYAILSGHNGVTVAENALQE 71
Query: 174 LFDYIAATLL----PDQLISDCLARLESQEPIQLVESYNDKFDIVGELKQLYLNSFKSFL 229
+ + L D+ + + + + +S N ++ +
Sbjct: 72 MAAELLLGQLNVCNTDEAVKELIRQSFMSVEKGYFDSINPHVATKTAIQLHLSADGMNQY 131
Query: 230 KQLLSSQKEQQFEMKHMLVNAFLS---------LDQHI-------SQEAQLKQGGNHLNM 273
+ +S Q E + L NA H+ + A L + H +
Sbjct: 132 E--ISQQFENVLQKLDSLNNALSVGSSAVLALIHRSHLYLGNIGNCR-ALLCKTDEHDTL 188
Query: 274 K----TLGHNTDNVREVERILN--EHPKNERDTVIRMERLLGQLAPLRAFGDVRYKWSKE 327
++ HN N E R+ +N + R +G + D + S
Sbjct: 189 TVTQLSVDHNLLNAEEAARLFRLGLMAQNFEGVPLYSTRCIGNYLGKAGYKDCNFLSSAT 248
Query: 328 LLQKYVVPHVGEQALAPNYFTPPYLTAQPDVI-HYRLTPRDRFLILATDGLWDLLSPL-- 384
P +P+++ ++TP RFL+L + GL L +
Sbjct: 249 A--------------------EPV-IFEPEIVGGIQITPACRFLVLMSSGLCRALHEIFP 287
Query: 385 --------QAVRLVGEHMSGKVTLRPLQLPRKHMKLSEINELLIARQEGLSLKPLDSNAA 436
+ VR++ E + L + + + +
Sbjct: 288 GDASTGNRELVRMISEEF------------QNQSTLGGVAQSV-----------VHRIVQ 324
Query: 437 THLLRHALGGTEYGIEHSKIAQLLSMPQEVVRLFRDDITITVVYFD 482
H H QL+ + V RDD+T+ + F+
Sbjct: 325 AH--------------HDTYMQLVEEHRSVTFNSRDDVTLLIRNFN 356
Score = 100 bits (251), Expect = 1e-23
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 20 GAVCCVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHNTDNVREVERILN--E 77
G+ +A I HL++ N G+C+A++ + + ++SV+HN N E R+
Sbjct: 154 GSSAVLALIHRSHLYLGNIGNCRALLCKTDEHDTLTVTQLSVDHNLLNAEEAARLFRLGL 213
Query: 78 HPKNERDTVIRMERLLGQLAPLRAFGDV 105
+N + R +G + D
Sbjct: 214 MAQNFEGVPLYSTRCIGNYLGKAGYKDC 241
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 104 bits (262), Expect = 3e-25
Identities = 67/355 (18%), Positives = 107/355 (30%), Gaps = 135/355 (38%)
Query: 156 GVFDGHGGAACAQVLSKRLFDYIAATLLPDQLISDCLARLESQEPIQLVESYNDKFDIVG 215
GV+DGHGG+ A +R+ +A +
Sbjct: 56 GVYDGHGGSQVANYCRERMHLALAEEI--------------------------------- 82
Query: 216 ELKQLYLNSFKSFLKQLLSSQKEQQFEMKHMLVNAFLSLDQHISQEAQLKQG-------- 267
+ K +LS + K L N+FL +D I A G
Sbjct: 83 -----------AKEKPMLSDGDTWLEKWKKALFNSFLRVDSEIESVAPETVGSTSVVAVV 131
Query: 268 -GNHLNMKTLG------------------HNTDNVREVERILNEHPKNERDTVIRME--R 306
+H+ + G H D E RI K VI+ R
Sbjct: 132 FPSHIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGK-----VIQWNGAR 186
Query: 307 LLGQLAPLRAFGDVRYKWSKELLQKYVVPHVGEQALAPNYFTPPYLTAQPDVIHYRLTPR 366
+ G LA R+ GD K P + P+V +
Sbjct: 187 VFGVLAMSRSIGDRYLK--------------------------PSIIPDPEVTAVKRVKE 220
Query: 367 DRFLILATDGLWDLLSPLQAVRLVGEHMSGKVTLRPLQLPRKHMKLSEINELLIARQEGL 426
D LILA+DG+WD+++ +A + + + L K ++ LL +
Sbjct: 221 DDCLILASDGVWDVMTDEEACEMARKR---------ILLWHKKNAVAGGASLLADERRKE 271
Query: 427 SLKPLDSNAATHLLRHALGGTEYGIEHSKIAQLLSMPQEVVRLFRDDITITVVYF 481
P +AA +L + A+ R +D+I++ VV
Sbjct: 272 GKDPAAMSAAEYLSKLAIQ----------------------RGSKDNISVVVVDL 304
Score = 59.4 bits (144), Expect = 6e-10
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 13 RRAKADEGAVCCVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHNTDNVREVE 72
A G+ VA + H+ VAN GD +AV+ A +SV+H D E
Sbjct: 116 SVAPETVGSTSVVAVVFPSHIFVANCGDSRAVLCR-----GKTALPLSVDHKPDREDEAA 170
Query: 73 RILNEHPKNERDTVIRME--RLLGQLAPLRAFGD 104
RI K VI+ R+ G LA R+ GD
Sbjct: 171 RIEAAGGK-----VIQWNGARVFGVLAMSRSIGD 199
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase,
PSI-2, protein structure initiative; 1.82A {Homo
sapiens}
Length = 307
Score = 102 bits (257), Expect = 1e-24
Identities = 55/256 (21%), Positives = 88/256 (34%), Gaps = 53/256 (20%)
Query: 156 GVFDGHGGAACAQVLSKRLFDYIAATLLPDQLISDCLARLESQEPIQLVESYNDKFDIVG 215
V+DGH G+ A S L ++I +++ +S + V
Sbjct: 59 AVYDGHAGSRVANYCSTHLLEHI----------------TTNEDFRAAGKSGSALELSVE 102
Query: 216 ELKQLYLNSFKSFLKQLLSSQKEQQFEMKHM---LVNAFLSLDQHI-------SQEAQLK 265
+K F + + + + + M V +S +HI S+ A L
Sbjct: 103 NVKNGIRTGFLKIDEYMRN-FSDLRNGMDRSGSTAVGVMIS-PKHIYFINCGDSR-AVLY 159
Query: 266 QGGNHLNMKTLGHNTDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGDVRYKWS 325
+ G T H N RE ERI N + ++R+ G LA RA GD YK
Sbjct: 160 RNGQVCFS-TQDHKPCNPREKERIQN------AGGSVMIQRVNGSLAVSRALGDYDYKCV 212
Query: 326 KELLQKYVVPHVGEQALAPNYFTPPYLTAQPDVIHYRLTPRDRFLILATDGLWDLLSPLQ 385
++ +P+V D F+ILA DG+WD++S +
Sbjct: 213 DGKGPT-----------------EQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEE 255
Query: 386 AVRLVGEHMSGKVTLR 401
V + L
Sbjct: 256 LCEYVKSRLEVSDDLE 271
Score = 61.3 bits (149), Expect = 1e-10
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 7 HSIRASRRAKADEGAVCCVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHNTD 66
+ R G+ I H++ N GD +AV+ N + +H
Sbjct: 120 RNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYR-----NGQVCFSTQDHKPC 174
Query: 67 NVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGD 104
N RE ERI N + ++R+ G LA RA GD
Sbjct: 175 NPREKERIQN------AGGSVMIQRVNGSLAVSRALGD 206
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 102 bits (255), Expect = 3e-24
Identities = 68/377 (18%), Positives = 114/377 (30%), Gaps = 101/377 (26%)
Query: 127 YDSNQLPSNKPIEDTRCEAKCLLTTGV-LLGVFDGHGGAACAQVLSKRLFDYIAATLLPD 185
+LP + D + L GV+DGHGG A RL +A +
Sbjct: 36 PHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEI--- 92
Query: 186 QLISDCLARLESQEPIQLVESYNDKFDIVGELKQLYLNSFKSFLKQLLSSQKEQQFEMKH 245
E + + +L ++ + ++
Sbjct: 93 --------ERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLE 144
Query: 246 ML---------VNAFLSLDQHI-------SQEAQLKQGGNHLNMKTLGHNTDNVREVERI 289
+ V A + HI S+ A L +G + + ++ H D E RI
Sbjct: 145 AVASETVGSTAVVALVC-SSHIVVSNCGDSR-AVLFRGKEAMPL-SVDHKPDREDEYARI 201
Query: 290 LNEHPKNERDTVIRME--RLLGQLAPLRAFGDVRYKWSKELLQKYVVPHVGEQALAPNYF 347
N VI+ + R+ G LA R+ GD K
Sbjct: 202 ENAG-----GKVIQWQGARVFGVLAMSRSIGDRYLK------------------------ 232
Query: 348 TPPYLTAQPDVIHYRLTPRDRFLILATDGLWDLLSPLQAVRLVGEHMSGKVTLRPLQLPR 407
PY+ +P+V + D LILA+DGLWD+++ + + +
Sbjct: 233 --PYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMW---------- 280
Query: 408 KHMKLSEINELLIARQEGLSLKPLDSNAATHLLRHALGGTEYGIEHSKIAQLLSMPQEVV 467
+ N + G + P AA +L AL S
Sbjct: 281 -----HKKNGAPPLAERGKGIDPACQAAADYLSMLALQK------GS------------- 316
Query: 468 RLFRDDITITVVYFDSD 484
+D+I+I V+ +
Sbjct: 317 ---KDNISIIVIDLKAQ 330
Score = 58.8 bits (142), Expect = 1e-09
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 18 DEGAVCCVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHNTDNVREVERILNE 77
G+ VA + H+ V+N GD +AV+ A +SV+H D E RI N
Sbjct: 150 TVGSTAVVALVCSSHIVVSNCGDSRAVLFR-----GKEAMPLSVDHKPDREDEYARIENA 204
Query: 78 HPKNERDTVIRME--RLLGQLAPLRAFGD 104
VI+ + R+ G LA R+ GD
Sbjct: 205 G-----GKVIQWQGARVFGVLAMSRSIGD 228
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI,
protei structure initiative, NEW YORK SGX research
center for STRU genomics; 1.70A {Anopheles gambiae}
Length = 304
Score = 99.4 bits (248), Expect = 2e-23
Identities = 56/259 (21%), Positives = 95/259 (36%), Gaps = 68/259 (26%)
Query: 156 GVFDGHGGAACAQVLSKRLFDYIAATLLPDQLISDCLARLESQEPIQLVESYNDKFDIVG 215
V+DGHGGA AQ S L ++ E+Y K +
Sbjct: 55 AVYDGHGGAEVAQYCSLHLPTFLKTV-----------------------EAYGRK-EFEK 90
Query: 216 ELKQLYLNSFKSFLKQLLSSQKEQQFEMKHML------------VNAFLSLDQHI----- 258
LK+ +L + L++ + + + V A L + +
Sbjct: 91 ALKEAFLGFDATLLQEKVIEELKVLSGDSAGSDAEPGKDSGCTAVVALLH-GKDLYVANA 149
Query: 259 --SQEAQLKQGGNHLNMKTLGHNTDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRA 316
S+ + + G L M + H ++ E +RI + V R+ G L RA
Sbjct: 150 GDSR-CVVCRNGKALEM-SFDHKPEDTVEYQRI-----EKAGGRVTLDGRVNGGLNLSRA 202
Query: 317 FGDVRYKWSKELLQKYVVPHVGEQALAPNYFTPPYLTAQPDVIHYRLTPRDRFLILATDG 376
GD YK +K L + ++A PD+ + P D F++LA DG
Sbjct: 203 IGDHGYKMNKSLPAE-----------------EQMISALPDIEKITVGPEDEFMVLACDG 245
Query: 377 LWDLLSPLQAVRLVGEHMS 395
+W+ ++ Q V+ V E ++
Sbjct: 246 IWNFMTSEQVVQFVQERIN 264
Score = 61.6 bits (150), Expect = 1e-10
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 1 MSSVSSHSIRASRRAKADEGAVCCVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVS 60
+ +S S + D G VA + G L+VAN GD + V+ N A ++S
Sbjct: 112 LKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCR-----NGKALEMS 166
Query: 61 VEHNTDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGD 104
+H ++ E +RI + V R+ G L RA GD
Sbjct: 167 FDHKPEDTVEYQRI-----EKAGGRVTLDGRVNGGLNLSRAIGD 205
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics,
protein structure initiative; 2.04A {Toxoplasma gondii}
Length = 324
Score = 98.6 bits (246), Expect = 6e-23
Identities = 45/258 (17%), Positives = 88/258 (34%), Gaps = 56/258 (21%)
Query: 156 GVFDGHGGAACAQVLSKRLFDYIAATLLPDQLISDCLARLESQEPIQLVESYNDKFDIVG 215
GVFDG G ++ + + + ++ ++ + + + E + +
Sbjct: 57 GVFDGTVGDFASENVKDLVVPQLISSPAWQEVTEMLRSDVPATEVDE---------KLPQ 107
Query: 216 ELKQLYLNSFKSFLKQLLSSQKEQQFEM------------KHMLV-N-----AFLSLDQH 257
L Q + +K+ +L+ ++ + + V + + ++
Sbjct: 108 LLDQAVDDMYKNADNELVKMCEQLNKDYASSTSVTAVLAKGFVAVGHLGDSRIAMGVETP 167
Query: 258 ISQEA-QLKQGGNHLNMKTLGHNTDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRA 316
L T+ H D E RI+ + +R
Sbjct: 168 NGLNCEFL----------TVDHKPDMPHEKLRIMR------NGGSVEYLHNHNNKPFIRG 211
Query: 317 FGDVRYKWSKELLQKYVVPHVGEQALA----PNYFTPPYLTAQPDVIHYRLTPRDRFLIL 372
GD ++ S+ + + L+ QPDV R+TP+ R +IL
Sbjct: 212 -GDFSFRKSRGEQP-------MQLQYSRAFGGKDLKMYGLSNQPDVRVVRVTPQHRVMIL 263
Query: 373 ATDGLWDLLSPLQAVRLV 390
ATDGLWD++S QAV +
Sbjct: 264 ATDGLWDVMSAAQAVEIA 281
Score = 57.4 bits (139), Expect = 3e-09
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 16/100 (16%)
Query: 20 GAVCCVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHNTDNVREVERILN--- 76
+ A + + V + GD + +GV N + ++V+H D E RI+
Sbjct: 137 SSTSVTAVLAKGFVAVGHLGDSRIAMGV-ETPNGLNCEFLTVDHKPDMPHEKLRIMRNGG 195
Query: 77 ---EHPKNERDTVIRM---------ERLLGQLAPLRAFGD 104
+ IR QL RAFG
Sbjct: 196 SVEYLHNHNNKPFIRGGDFSFRKSRGEQPMQLQYSRAFGG 235
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin,
hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1
d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Length = 382
Score = 93.3 bits (232), Expect = 7e-21
Identities = 44/262 (16%), Positives = 77/262 (29%), Gaps = 69/262 (26%)
Query: 156 GVFDGHGGAACAQVLSKRLFDYIAATLLPDQLISDCLARLESQEPIQLVESYNDKFDIVG 215
V+DGH G+ A+ + L D+I + + + ++
Sbjct: 57 AVYDGHAGSQVAKYCCEHLLDHIT-----------------NNQDFKGSAGAPSVENVKN 99
Query: 216 ELKQLYLNSFKSFLKQLLSSQKEQQ---------FEMKHMLV-N-----AFLSLDQHISQ 260
++ +L + + +H N L
Sbjct: 100 GIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLC------- 152
Query: 261 EAQLKQGGNHLNMKTLGHNTDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGDV 320
+ T H N E ERI N + ++R+ G LA RA GD
Sbjct: 153 -----RNRKVHFF-TQDHKPSNPLEKERIQN------AGGSVMIQRVNGSLAVSRALGDF 200
Query: 321 RYKWSKELLQKYVVPHVGEQALAPNYFTPPYLTAQPDVIHYRLTP-RDRFLILATDGLWD 379
YK ++ +P+V + D+F+ILA DG+WD
Sbjct: 201 DYKCVHGKGPT-----------------EQLVSPEPEVHDIERSEEDDQFIILACDGIWD 243
Query: 380 LLSPLQAVRLVGEHMSGKVTLR 401
++ + V + L
Sbjct: 244 VMGNEELCDFVRSRLEVTDDLE 265
Score = 59.4 bits (144), Expect = 9e-10
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 20 GAVCCVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHNTDNVREVERILNEHP 79
G+ I H + N GD + ++ N + +H N E ERI N
Sbjct: 126 GSTAVGVLISPQHTYFINCGDSRGLLCR-----NRKVHFFTQDHKPSNPLEKERIQN--- 177
Query: 80 KNERDTVIRMERLLGQLAPLRAFGD 104
+ ++R+ G LA RA GD
Sbjct: 178 ---AGGSVMIQRVNGSLAVSRALGD 199
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.25A {Homo sapiens}
Length = 274
Score = 88.2 bits (219), Expect = 8e-20
Identities = 48/265 (18%), Positives = 84/265 (31%), Gaps = 62/265 (23%)
Query: 139 EDTRCEAKCLLTTGVLLGVFDGHGGAACAQVLSKRLFDYIAATLLPDQLISDCLARLESQ 198
ED R + L + V+DGHGG A A + I
Sbjct: 23 ED-RFDFAQLTDEVLYFAVYDGHGGPAAADFCHTHMEKCIM------------------- 62
Query: 199 EPIQLVESYNDKFDIVGELKQLYLNSFKSFLKQLLSSQKEQQFEMKHMLVNAFLSLDQHI 258
+ + ++ L +L K+F S A L +
Sbjct: 63 ------DLLPKEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGIEL 116
Query: 259 -------SQEAQLKQGGNHLNMKTLGHNTDNVREVERILNEHPKNERDTVIRMERLLGQL 311
S+ A L + G + + T+ H + E ERI +++ + + G+L
Sbjct: 117 VVASVGDSR-AILCRKGKPMKL-TIDHTPERKDEKERIKKCGGFVAWNSLGQP-HVNGRL 173
Query: 312 APLRAFGDVRYKWSKELLQKYVVPHVGEQALAPNYFTPPYLTAQPDVIHYRLTPR-DRFL 370
A R+ GD+ K + A+P+ +L D FL
Sbjct: 174 AMTRSIGDLDLK-------------------------TSGVIAEPETKRIKLHHADDSFL 208
Query: 371 ILATDGLWDLLSPLQAVRLVGEHMS 395
+L TDG+ +++ + V +
Sbjct: 209 VLTTDGINFMVNSQEICDFVNQCHD 233
Score = 54.3 bits (131), Expect = 2e-08
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 6 SHSIRASRRAKADEGAVCCVAHI-DGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHN 64
SH+ ++ G VA + DG L VA+ GD +A++ K++++H
Sbjct: 88 SHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCR-----KGKPMKLTIDHT 142
Query: 65 TDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGD 104
+ E ERI +++ + + G+LA R+ GD
Sbjct: 143 PERKDEKERIKKCGGFVAWNSLGQP-HVNGRLAMTRSIGD 181
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 86.5 bits (214), Expect = 1e-18
Identities = 48/265 (18%), Positives = 84/265 (31%), Gaps = 62/265 (23%)
Query: 139 EDTRCEAKCLLTTGVLLGVFDGHGGAACAQVLSKRLFDYIAATLLPDQLISDCLARLESQ 198
ED R + L + V+DGHGG A A + I
Sbjct: 137 ED-RFDFAQLTDEVLYFAVYDGHGGPAAADFCHTHMEKCIM------------------- 176
Query: 199 EPIQLVESYNDKFDIVGELKQLYLNSFKSFLKQLLSSQKEQQFEMKHMLVNAFLSLDQHI 258
+ + ++ L +L K+F S A L +
Sbjct: 177 ------DLLPKEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGIEL 230
Query: 259 -------SQEAQLKQGGNHLNMKTLGHNTDNVREVERILNEHPKNERDTVIRMERLLGQL 311
S+ A L + G + + T+ H + E ERI +++ + + G+L
Sbjct: 231 VVASVGDSR-AILCRKGKPMKL-TIDHTPERKDEKERIKKCGGFVAWNSLGQP-HVNGRL 287
Query: 312 APLRAFGDVRYKWSKELLQKYVVPHVGEQALAPNYFTPPYLTAQPDVIHYRLTPR-DRFL 370
A R+ GD+ K + A+P+ +L D FL
Sbjct: 288 AMTRSIGDLDLK-------------------------TSGVIAEPETKRIKLHHADDSFL 322
Query: 371 ILATDGLWDLLSPLQAVRLVGEHMS 395
+L TDG+ +++ + V +
Sbjct: 323 VLTTDGINFMVNSQEICDFVNQCHD 347
Score = 54.1 bits (130), Expect = 4e-08
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 6 SHSIRASRRAKADEGAVCCVAHI-DGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHN 64
SH+ ++ G VA + DG L VA+ GD +A++ K++++H
Sbjct: 202 SHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCR-----KGKPMKLTIDHT 256
Query: 65 TDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGD 104
+ E ERI +++ + + G+LA R+ GD
Sbjct: 257 PERKDEKERIKKCGGFVAWNSLGQP-HVNGRLAMTRSIGD 295
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein
structure initiative, NEW YORK structural research
consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 83.2 bits (205), Expect = 2e-17
Identities = 39/294 (13%), Positives = 79/294 (26%), Gaps = 66/294 (22%)
Query: 154 LLGVFDGHGGAACAQVLSKRLFDYIA------------ATLLPDQLISDCLARLESQEPI 201
+ +FDG G A L++ + +Y+ D + S I
Sbjct: 50 VHAMFDGFQGRHSAMWLAQNVMNYLNDLRDVNEEEITRQFERMDGDLRAANLPGGSSALI 109
Query: 202 QLVESYNDKFDIVGELKQLYLNSFKSFLKQLLSSQKEQQFEMKHMLVNAFLSLDQHISQE 261
V + +Q+ K F S + + ++ F +
Sbjct: 110 IFVRYEKKPTEARVVGRQIVPEGAKEFT----SVAEALGGPLMPVVAMNFRRDPRAAKGI 165
Query: 262 AQ------------LKQGGNHLNMKTLGHNTDNVREVERILNEHPKNERDTVIRME---R 306
LK G +++ + H + +E R+ +
Sbjct: 166 YTIHVASLGNSRCVLKSGRTAIHL-STPHTASSHKERHRVQAAG-----GVFTTVNGELL 219
Query: 307 LLGQLAPLRAFGDVRYKWSKELLQKYVVPHVGEQALAPNYFTPPYLTAQPDVIHYRLTPR 366
L G + RAFG +K + + ++A PDV + P
Sbjct: 220 LGGVVPMTRAFGSFDFKKGGQGKLQ-----------------QDLVSAVPDVTTFFAYPG 262
Query: 367 DRFLILATDGLWDLLSPLQAVRLVGEHMSGKVTLRPLQLPRKHMKLSEINELLI 420
D ++ T G + A+ P + + + ++
Sbjct: 263 D-DIVAGTAGAFAHFRSHAAIAAAIAL-----------YPVSPETVLDAAKAMV 304
Score = 45.4 bits (107), Expect = 2e-05
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 13/84 (15%)
Query: 24 CVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHNTDNVREVERILNEHPKNER 83
A +HVA+ G+ + V+ A +S H + +E R+
Sbjct: 159 PRAAKGIYTIHVASLGNSRCVLKS-----GRTAIHLSTPHTASSHKERHRVQAAG----- 208
Query: 84 DTVIRME---RLLGQLAPLRAFGD 104
+ L G + RAFG
Sbjct: 209 GVFTTVNGELLLGGVVPMTRAFGS 232
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
sulfate structural genomics, PSI-2, protein structure
initiative; 1.90A {Toxoplasma gondii}
Length = 364
Score = 73.2 bits (179), Expect = 3e-14
Identities = 49/306 (16%), Positives = 88/306 (28%), Gaps = 76/306 (24%)
Query: 154 LLGVFDGHGGAACAQVLSKRLFDYIAATLLPDQLISDCLARLESQEPIQLVESYNDKFDI 213
+ VFDGH G A +Q +K ++ + ++ + + L K
Sbjct: 45 IKAVFDGHAGEATSQYCAKHAAKHLGKL--SEFTFAEV-----KKACLSLDAEIIRKLGP 97
Query: 214 VGELKQLYLNSFKSFLKQLLSSQKEQQFEMKHMLVNAFLSLDQHISQEAQ---------- 263
+ L + + + F+ L++ I +E +
Sbjct: 98 KHVAGSTGIIVAIERLSAPVVENVVGREIVPRAHEETFVPLEKLIQEEEEAEHPELVGRY 157
Query: 264 ----------LKQGGNHLNMKTLG-------------------HNTDNVREVERILNEHP 294
+ G + +G H ++ E RI
Sbjct: 158 PRVPDVQQKTIPAGSFLVTAINIGDSRATLIHSDGGLTRLSKDHKPNHPTEASRIEK--- 214
Query: 295 KNERDTVIRMERLLGQLAPLRAFGDVRYKWSKELLQKYVVPHVGEQALAPNYFTPPYLTA 354
+ R+ G LA RAFGD +K + L EQ + A
Sbjct: 215 AGGSVETFDVPRVDGVLALSRAFGDSDFKMNPNL-------PPEEQ----------KVIA 257
Query: 355 QPDVIHYRLTPRDRFLILATDGLWDLLSPLQAVRLVGEHMSGKVTLRPLQLPRKHMKLSE 414
PDV + D L+LA DG+++ A ++ R L E
Sbjct: 258 VPDVRQFYALSSD-LLLLACDGVYEPSGMDWAYVRDLTV---------AEMQRSKGDLEE 307
Query: 415 INELLI 420
+ ++
Sbjct: 308 VAARVM 313
Score = 49.3 bits (117), Expect = 2e-06
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 1 MSSVSSHSIRASRRAKADEGAVCCVAHIDGPHLHVANTGDCQAVIGVLTDDNNWIAKKVS 60
+ R + N GD +A + ++ ++S
Sbjct: 143 QEEEEAEHPELVGRYPRVPDVQQKTIPAGSFLVTAINIGDSRATL----IHSDGGLTRLS 198
Query: 61 VEHNTDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGD 104
+H ++ E RI + R+ G LA RAFGD
Sbjct: 199 KDHKPNHPTEASRIEK---AGGSVETFDVPRVDGVLALSRAFGD 239
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.0 bits (178), Expect = 1e-13
Identities = 94/582 (16%), Positives = 172/582 (29%), Gaps = 202/582 (34%)
Query: 27 HID---GPHLHVANTGDCQAVIGVLTDDNNWIAKKVSVEHNTDNVR------EVERILNE 77
H+D G H + + ++ V D + D + E++ I+
Sbjct: 6 HMDFETGEHQY-----QYKDILSVFEDA---FVDNFDCKDVQDMPKSILSKEEIDHII-- 55
Query: 78 HPKNERDTVIRMERLLGQL-----APLRAFGDVTTILRTN-EF------------SLEIE 119
+D V RL L ++ F V +LR N +F S+
Sbjct: 56 ---MSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 120 NHTSVKS--YDSNQL------PSNKPIEDTRCEAKCLL----TTGVLLGVFDGHGGAACA 167
+ + Y+ NQ+ +P R + LL VL+ G
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---QALLELRPAKNVLI-----DGVLGSG 162
Query: 168 -QVL-SKRLFDYIAATLLPDQL----ISDCL---ARLESQEPI--QLVESYNDKFDIVGE 216
+ Y + ++ + +C LE + + Q+ ++ + D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 217 LKQLYLNSFKSFLKQLLSSQKEQQFEMKHMLVNAFLSLDQHISQEAQLKQGGNHLNM--K 274
+K L ++S ++ L++LL S+ N L L ++ N+ K
Sbjct: 223 IK-LRIHSIQAELRRLLKSKP---------YENCLLVLL-NVQNAKAWN----AFNLSCK 267
Query: 275 TLGHNTDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGDVRYKWSKELLQKYV- 333
L T ++V L+ T I ++ L P K LL KY+
Sbjct: 268 IL--LTTRFKQVTDFLS----AATTTHISLDHHSMTLTP---------DEVKSLLLKYLD 312
Query: 334 -----VPHVGEQALAPNYFTPPYLTA------QPDVIH---YR----------------- 362
+P + L N P + + + ++
Sbjct: 313 CRPQDLP---REVLTTN----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 363 LTP---RDRFLILAT--DG----------LW---------DLLSPLQAVRLVGEHM-SGK 397
L P R F L+ +W +++ L LV +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 398 VTLRPLQLPRKHMKLSEINEL---LIAR--------QEGLSLKPLDSNAATHLLRHALGG 446
+++ + L +KL L ++ + L LD +H+ H
Sbjct: 426 ISIPSIYL-ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL--- 481
Query: 447 TEYGIEHSKIAQLLSMPQEVVRLFRDDITITVVYFDSDYLRS 488
IEH E + LFR V+ D +L
Sbjct: 482 --KNIEHP----------ERMTLFRM------VFLDFRFLEQ 505
Score = 65.3 bits (158), Expect = 3e-11
Identities = 72/515 (13%), Positives = 126/515 (24%), Gaps = 222/515 (43%)
Query: 54 WIAKKVSVEHNTDNVREVERILNEHPKNERDTVIRMERLLGQLAP---LRAFGDVTTILR 110
W+ N++ + +++LL Q+ P R+ LR
Sbjct: 186 WL-----------NLKNCNS--------PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 111 TNEFSLEIENHTSVKSYDSNQL------PSNKPIE--DTRCEAKCLLTTGVLLGVFDGHG 162
+ E+ K Y N L + K + C K LLTT V D
Sbjct: 227 IHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSC--KILLTTRFK-QVTDFLS 282
Query: 163 GAA---------------------CAQVLSKRLFD--------------YIAATL----- 182
A + L R D IA ++
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 183 --------LPDQL---ISDCLARLESQE-----------------PIQLVE------SYN 208
D+L I L LE E P L+ +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 209 DKFDIVGELKQLYLNSFKSFLKQLLSSQKEQQFEMKHMLVNAFLSLDQHISQEAQLKQGG 268
D +V +L + S +++ KE + + +L L + E L
Sbjct: 403 DVMVVVNKLHK------YSLVEK---QPKESTISI-PSI---YLELKVKLENEYAL---- 445
Query: 269 NHLNMKTLGHNTDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGDVRYKW--SK 326
H ++ + F
Sbjct: 446 ---------HR--------------------------SIVDHYNIPKTF----DSDDLIP 466
Query: 327 ELLQKYVVPHVG------EQALAPNYFTPPYLTAQPDVIHYRLTPRDRFL---ILATDGL 377
L +Y H+G E F +L D RFL I
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL----D---------FRFLEQKIRHDSTA 513
Query: 378 W----DLLSPLQAVRLVGEHMSGKVTLRPLQLPRKHMKLSEINELLIARQEGLSLKPLDS 433
W +L+ LQ ++ ++ P+ ++ I + L
Sbjct: 514 WNASGSILNTLQQLKFYKPYIC-------DNDPKYERLVNAILDFLP------------- 553
Query: 434 NAATHLLRHALGGTEYGIEHSKIAQL-LSMPQEVV 467
+L+ +++ + ++ L E +
Sbjct: 554 KIEENLICS---------KYTDLLRIALMAEDEAI 579
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 4e-07
Identities = 71/475 (14%), Positives = 131/475 (27%), Gaps = 175/475 (36%)
Query: 161 HGGAACAQVLSKRLFDYIAATLLPDQLISDCLARLES----QEP---IQLVESY------ 207
HG ++ + A+ L +Q E EP +LV +
Sbjct: 13 HGSLEHVLLVPTAS--FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 208 ---NDKFDIVGELKQLYLNSFKS-FLK---------QLLSSQKEQQFEMKHMLVN---AF 251
K ++ L L F++ +L+ +LL + K ++ N A
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 252 LSLDQHISQEAQ--LKQ-------------GGNHLNMKTLGHNTDNVREVERILNEHPKN 296
+ + +++ L + GG G+ D E+ + +
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-------GNTDDYFEELRDLYQTYHVL 183
Query: 297 ERDTVIRMERLLGQLAPLRAFGDVRY-------KWSKELLQKYVVPHVGEQALAPNYFTP 349
D + L +L + + +W L+ P + P+
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW----LEN---P-----SNTPD---K 228
Query: 350 PYLTAQP---------DVIHYR-------LTP---RDRF-------------LILATDGL 377
YL + P + HY TP R + +A
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 378 WD--LLSPLQAVRL---VGEHMSGKVTLRPLQLPRKHMKLS-EINE------LLIARQEG 425
W+ +S +A+ + +G LP ++ S E NE L I
Sbjct: 289 WESFFVSVRKAITVLFFIGVR--CYEAYPNTSLPPSILEDSLENNEGVPSPMLSI---SN 343
Query: 426 LSLKPLDS--------------------NAATHL---------------LR--HALGGTE 448
L+ + + N A +L LR A G +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 449 -YGIEHSK-----IAQLL--SMP------QEVVRLFRDDITITVVYFDSDYLRSP 489
I S+ + L + P L D+ V F++ ++ P
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Score = 40.8 bits (95), Expect = 0.001
Identities = 43/257 (16%), Positives = 72/257 (28%), Gaps = 93/257 (36%)
Query: 65 TDNVREVERILNEHPKNERDTVIRMERLL---------GQLAPLRAFGDVTTILRTNEFS 115
D V L H E+ IR E G+L + F ++ + F
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIR-ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 116 LEIE--NHTSVKSYDSNQLPSNKPIEDTRCEAKCLLTTGVLL-------GVFD------G 160
E + T P L G+ G
Sbjct: 1721 SEKGLLSATQ------FTQP-------------ALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 161 HG-G-----AACAQVLS---------KR--------------LFDYIAATLLPDQL-ISD 190
H G A+ A V+S R +Y + P ++ S
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 191 CLARLE------SQEPIQLVESYNDKFD---IV--GELKQLYLNSFKSFLKQLLSSQKEQ 239
L+ + LVE N + V G+L+ L + +L+ K Q
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT------VTNVLNFIKLQ 1875
Query: 240 QFEMKHMLVNAFLSLDQ 256
+ ++ + + LSL++
Sbjct: 1876 KIDIIELQKS--LSLEE 1890
Score = 35.8 bits (82), Expect = 0.041
Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 43/121 (35%)
Query: 394 MSGKVTLRPLQLPRKHMKLSEINELLI-------ARQEGLSLK---------PLDSNAA- 436
M + RPL L H L + LL+ A Q L+ P + AA
Sbjct: 1 MDA-YSTRPLTL--SHGSLE--HVLLVPTASFFIASQ----LQEQFNKILPEPTEGFAAD 51
Query: 437 ------THLLRHALGGTEYGIEHSKIAQLLSMPQEVVRLFRDDITITVVYFDSDYLRSPN 490
L+ LG +E SK+ Q +V+ L + F++ YL +
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQF----DQVLNL-------CLTEFENCYLEGND 100
Query: 491 V 491
+
Sbjct: 101 I 101
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 33.7 bits (78), Expect = 0.089
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 353 TAQPDVIHYRLTPRDRFLILATDGLWDLLS 382
PDV P DR L +++DGL+
Sbjct: 165 HIGPDVFGIDCGPGDRLL-ISSDGLFAAAD 193
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases,
PSTP/PPP, structural genomics, PSI, protein structure
initiative; 1.95A {Mycobacterium tuberculosis} SCOP:
d.219.1.1 PDB: 2cm1_A
Length = 237
Score = 33.7 bits (78), Expect = 0.093
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 354 AQPDVIHYRLTPRDRFLILATDGLWDLLS 382
+P + DR+L L +DGL D +S
Sbjct: 168 VEPTLTMREARAGDRYL-LCSDGLSDPVS 195
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
PDB: 2j86_A 2y09_A 2xzv_A
Length = 240
Score = 33.3 bits (77), Expect = 0.11
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 353 TAQPDVIHYRLTPRDRFLILATDGLWDLLS 382
+Q D+ L P DR L L +DGL + L+
Sbjct: 172 LSQIDIQPIDLEPGDRLL-LCSDGLTEELT 200
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling
protein; 2.65A {Streptococcus agalactiae}
Length = 250
Score = 33.4 bits (77), Expect = 0.12
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 353 TAQPDVIHYRLTPRDRFLILATDGLWDLLSPLQAVRLVGEHMS 395
+PD+ + L D + + +DGL ++LS ++ + +
Sbjct: 176 PVEPDLGVHLLEEGDYLV-VNSDGLTNMLSNADIATVLTQEKT 217
>3rnr_A Stage II sporulation E family protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Length = 211
Score = 31.1 bits (71), Expect = 0.58
Identities = 5/35 (14%), Positives = 10/35 (28%), Gaps = 1/35 (2%)
Query: 348 TPPYLTAQPDVIHYRLTPRDRFLILATDGLWDLLS 382
L + L + +DG++ L
Sbjct: 139 IENLTEISTSEAPLPLEAGEGVL-VVSDGVYRSLH 172
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 29.8 bits (68), Expect = 2.0
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 388 RLVGEHMSGKVTLRPLQLPRKHMKLSEINELLIARQEGLSLKP 430
LV + GK L K EIN+ I ++G++LKP
Sbjct: 327 ELVRLYQQGKFPFDQL---VKFYAFDEINQAAIDSRKGITLKP 366
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.9
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 7/27 (25%)
Query: 116 LEIENHTSVKSYDSNQLPS---NKPIE 139
L+ S+K Y + P+ +E
Sbjct: 25 LQ----ASLKLYADDSAPALAIKATME 47
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 29.0 bits (66), Expect = 4.5
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 17/87 (19%)
Query: 407 RKHMKLSEINEL-------------LIARQEGLSLKPLDSNAATHLLRHALGGTEYGIEH 453
R + + + L L+ +E ++ + A LR G
Sbjct: 444 RAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNA-DFLRQL---KRKGFAD 499
Query: 454 SKIAQLLSMPQEVVRLFRDDITITVVY 480
+++A+L + + +R RD + VY
Sbjct: 500 ARLAKLAGVREAEIRKLRDQYDLHPVY 526
>3gbh_A NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FMN oxidoreductase,
structural genomics, JO center for structural genomics;
HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc
12228}
Length = 213
Score = 28.4 bits (64), Expect = 4.5
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 106 TTILRTNEFSLEIENHTSVKSYDSNQLPSNKPIED 140
+ R N+F+ + + SVK +D N I
Sbjct: 3 QKLTRINDFNEVLNSRKSVKVFD-----ENYKIPR 32
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B
2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Length = 1131
Score = 28.7 bits (64), Expect = 5.7
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 14/78 (17%)
Query: 273 MKTLGHNTDNVRE-VERILNEHPKNER-----------DTVIRMERLLGQLAPLRAFGDV 320
M+ LG TD R+ V + + V +G + +
Sbjct: 230 MRALGILTD--RDIVYAVSLDPEIQNELFPSLEQASSIANVDDALDFIGSRVAIGQKREN 287
Query: 321 RYKWSKELLQKYVVPHVG 338
R + +++++ KY +PH+G
Sbjct: 288 RIEKAQQIIDKYFLPHLG 305
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics,
montreal-kingston BA structural genomics initiative,
BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Length = 246
Score = 27.6 bits (61), Expect = 8.1
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 18/69 (26%)
Query: 402 PLQLPRKHMKLSEINELL-----IARQEGLSLKP-----------LDSNAATHLLRHALG 445
+PR MK S IN++L Q + L P LD+ A + LG
Sbjct: 12 SGLVPRGSMKRSAINDILGHTRQFFSQHDVHLPPFASFSPAQWQQLDTAAWEEVFDLKLG 71
Query: 446 G--TEYGIE 452
T +G
Sbjct: 72 WDVTAFGRN 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.391
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,392,413
Number of extensions: 453072
Number of successful extensions: 1183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1116
Number of HSP's successfully gapped: 68
Length of query: 492
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 395
Effective length of database: 3,993,456
Effective search space: 1577415120
Effective search space used: 1577415120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)