RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8053
         (492 letters)



>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase
           2C, catalytic domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 295

 Score = 65.0 bits (157), Expect = 3e-12
 Identities = 52/331 (15%), Positives = 90/331 (27%), Gaps = 93/331 (28%)

Query: 154 LLGVFDGHGGAACAQVLSKRLFDYIAATLLPDQLISDCLARLESQEPIQLVESYNDKFDI 213
              V+DGH G+  A+   + L D+I                             ++   +
Sbjct: 54  FFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRV 113

Query: 214 VGELKQLYLNSFKSFLKQLLSSQKEQQFEMKHMLVNAFLSLDQHISQEAQLKQGGNHLNM 273
           + E K     S  + +  L+S Q                           L +       
Sbjct: 114 MSEKKHGADRSGSTAVGVLISPQHTYFINCGD--------------SRGLLCRNRKVHFF 159

Query: 274 KTLGHNTDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGDVRYKWSKELLQKYV 333
            T  H   N  E ERI N            ++R+ G LA  RA GD  YK          
Sbjct: 160 -TQDHKPSNPLEKERIQNAGGSV------MIQRVNGSLAVSRALGDFDYKCVHGK----- 207

Query: 334 VPHVGEQALAPNYFTPPYLTAQPDVIHYRLT-PRDRFLILATDGLWDLLSPLQAVRLVGE 392
                         T   ++ +P+V     +   D+F+ILA DG+WD++   +    V  
Sbjct: 208 ------------GPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRS 255

Query: 393 HMSGKVTLRPLQLPRKHMKLSEINELLIARQEGLSLKPLDSNAATHLLRHALGGTEYGIE 452
            +     L                                      ++   L        
Sbjct: 256 RLEVTDDLE--------------------------------KVCNEVVDTCLY------- 276

Query: 453 HSKIAQLLSMPQEVVRLFRDDITITVVYFDS 483
                          +  RD++++ ++ F +
Sbjct: 277 ---------------KGSRDNMSVILICFPN 292


>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase
           pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 235

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 147 CLLTTGVLLGVFDGHGGAACAQVLSKRLFDYIAATLLPDQLISDCLARLE 196
            +     LL + DG GG A  +V S+ +   +A  L  D+   D LA+L+
Sbjct: 21  SVYAGARLLALADGMGGHAAGEVASQLVIAALAH-LDDDEPGGDLLAKLD 69


>d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies
           virus, strain CVS-11 [TaxId: 11292]}
          Length = 111

 Score = 26.4 bits (58), Expect = 3.5
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 440 LRHALGGTEYGIEHSKIAQLLSMPQEVVRLFRDDI 474
           LR  LG     + +SK  QLL    ++ ++ +DD+
Sbjct: 74  LRCVLGWV--ALANSKKFQLLVEADKLSKIMQDDL 106


>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl
           transferase subunit beta, AccD {Escherichia coli [TaxId:
           562]}
          Length = 263

 Score = 27.1 bits (59), Expect = 5.4
 Identities = 13/66 (19%), Positives = 22/66 (33%)

Query: 360 HYRLTPRDRFLILATDGLWDLLSPLQAVRLVGEHMSGKVTLRPLQLPRKHMKLSEINELL 419
           H R+T R+R   L  +G    L      + V +    K     L   +K     +   ++
Sbjct: 30  HMRMTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVM 89

Query: 420 IARQEG 425
                G
Sbjct: 90  KGTLYG 95


>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 217

 Score = 26.6 bits (58), Expect = 6.3
 Identities = 9/72 (12%), Positives = 27/72 (37%)

Query: 49  TDDNNWIAKKVSVEHNTDNVREVERILNEHPKNERDTVIRMERLLGQLAPLRAFGDVTTI 108
           + D+    +++S + +      + +   +     +     M+ +  +L+    +G V  +
Sbjct: 45  SRDDKDSKERMSRKMSIQEYELIHQDKEDEGCLRKYRRQCMQDMHQKLSFGPRYGFVYEL 104

Query: 109 LRTNEFSLEIEN 120
               +F   IE 
Sbjct: 105 ETGEQFLETIEK 116


>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus
           subtilis [TaxId: 1423]}
          Length = 152

 Score = 25.8 bits (56), Expect = 8.9
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 205 ESYNDKFDIVGELKQLYLNSFKSFLKQLLSSQKE 238
           E    ++D V   +    +SF  F    +   K+
Sbjct: 109 ECPVVEWDRVIGYQDTVADSFIEFFYNKIQEAKD 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,757,269
Number of extensions: 82122
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 11
Length of query: 492
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 403
Effective length of database: 1,185,626
Effective search space: 477807278
Effective search space used: 477807278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)