BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8055
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EHU|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
pdb|3EHU|B Chain B, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 6 YLNAENASKWCNANGSWNSFANYSLCTDI 34
Y N + C ANGSW + NYS C +I
Sbjct: 428 YNTTNNGYRECLANGSWAARVNYSECQEI 456
>pdb|3EHT|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 6 YLNAENASKWCNANGSWNSFANYSLCTDI 34
Y N + C ANGSW + NYS C +I
Sbjct: 428 YNTTNNGYRECLANGSWAARVNYSECQEI 456
>pdb|3EHS|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (Crfr1)
Length = 476
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 6 YLNAENASKWCNANGSWNSFANYSLCTDI 34
Y N + C ANGSW + NYS C +I
Sbjct: 428 YNTTNNGYRECLANGSWAARVNYSECQEI 456
>pdb|3N93|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N93|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N95|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N96|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
Length = 482
Score = 29.6 bits (65), Expect = 0.53, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 6 YLNAENASKWCNANGSWNSFANYSLCTDI 34
Y NA + C NG+W S NYS C I
Sbjct: 445 YNTTRNAYRECLENGTWASKINYSQCEPI 473
>pdb|2V9K|A Chain A, Crystal Structure Of Human Pus10, A Novel Pseudouridine
Synthase
Length = 530
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 34 IKKTTQDLSEPGIEITTMIYSVGYTLSLIALIIAVWIFV 72
IKK Q + G E T++++SV + L A W+ V
Sbjct: 126 IKKVCQKVEASGFEFTSLVFSVSFPPQLSVREHAAWLLV 164
>pdb|2L27|A Chain A, Nmr Structure Of The Ecd1 Of Crf-R1 In Complex With A
Peptide Agonist
Length = 84
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 6 YLNAENASKWCNANGSWNSFANYSLCTDI 34
Y N + C ANGSW + NYS C +I
Sbjct: 53 YNTTNNGYRECLANGSWAARVNYSECQEI 81
>pdb|2JNC|A Chain A, Refined 3d Nmr Structure Of Ecd1 Of Mcrf-R2beta At Ph 5
Length = 119
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 6 YLNAENASKWCNANGSWNSFANYSLCTDI 34
Y NA + C NG+W S NYS C I
Sbjct: 79 YNTTRNAYRECLENGTWASRVNYSHCEPI 107
>pdb|2JND|A Chain A, 3d Nmr Structure Of Ecd1 Of Mcrf-R2b In Complex With
Astressin
Length = 119
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 6 YLNAENASKWCNANGSWNSFANYSLCTDI 34
Y NA + C NG+W S NYS C I
Sbjct: 79 YNTTRNAYRECLENGTWASRVNYSHCEPI 107
>pdb|1U34|A Chain A, 3d Nmr Structure Of The First Extracellular Domain Of
Crfr- 2beta, A Type B1 G-Protein Coupled Receptor
Length = 119
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 6 YLNAENASKWCNANGSWNSFANYSLCTDI 34
Y NA + C NG+W S NYS C I
Sbjct: 79 YNTTRNAYRECLENGTWASRVNYSHCEPI 107
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 27.3 bits (59), Expect = 2.7, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 19 NGSWNSFANYSLCTDIKKTTQ 39
+G WN ++N+S C+ +KT Q
Sbjct: 491 DGKWNCWSNWSSCSGRRKTRQ 511
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.139 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,910,233
Number of Sequences: 62578
Number of extensions: 127444
Number of successful extensions: 341
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 11
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 46 (22.3 bits)