Query psy8055
Match_columns 139
No_of_seqs 121 out of 1084
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 17:14:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4564|consensus 100.0 2.7E-32 5.8E-37 228.5 12.8 134 6-139 96-253 (473)
2 KOG4193|consensus 99.9 6.6E-24 1.4E-28 183.4 10.5 119 17-139 272-410 (610)
3 PF00002 7tm_2: 7 transmembran 99.8 8.1E-20 1.8E-24 140.7 1.3 93 47-139 1-96 (242)
4 KOG4289|consensus 99.7 5.1E-16 1.1E-20 141.1 9.9 127 8-139 2105-2250(2531)
5 PF05462 Dicty_CAR: Slime mold 98.6 4.2E-07 9E-12 73.5 10.3 96 43-138 3-98 (303)
6 PF11710 Git3: G protein-coupl 97.8 0.00017 3.7E-09 55.1 8.7 91 49-139 3-98 (201)
7 PF02793 HRM: Hormone receptor 97.6 2E-05 4.3E-10 49.7 1.1 30 4-33 34-65 (66)
8 smart00008 HormR Domain presen 97.0 0.00073 1.6E-08 43.2 2.9 31 5-35 34-65 (70)
9 PF01534 Frizzled: Frizzled/Sm 96.9 0.012 2.6E-07 48.2 10.0 91 46-136 8-115 (328)
10 PF02101 Ocular_alb: Ocular al 88.2 5.4 0.00012 33.7 9.1 25 114-138 115-139 (405)
11 PF04148 Erv26: Transmembrane 74.3 37 0.0008 26.3 8.6 56 48-103 3-63 (211)
12 PHA02639 EEV host range protei 74.1 3.6 7.9E-05 33.3 3.2 26 5-32 181-206 (295)
13 PF00084 Sushi: Sushi domain ( 73.3 1.1 2.5E-05 25.8 0.1 20 5-24 32-51 (56)
14 PHA02831 EEV host range protei 71.0 6.9 0.00015 31.3 4.0 20 5-24 171-190 (268)
15 smart00032 CCP Domain abundant 70.2 2.5 5.4E-05 24.1 1.1 19 6-24 34-52 (57)
16 PHA03234 DNA packaging protein 66.3 70 0.0015 26.0 9.9 88 49-136 35-126 (338)
17 PHA02638 CC chemokine receptor 65.6 81 0.0017 26.5 10.0 79 48-131 100-184 (417)
18 PF05760 IER: Immediate early 65.2 6.1 0.00013 32.2 2.7 16 82-97 28-43 (300)
19 cd00033 CCP Complement control 63.8 3.7 7.9E-05 23.5 0.9 19 6-24 33-51 (57)
20 PF00001 7tm_1: 7 transmembran 62.8 55 0.0012 23.6 8.1 68 69-136 7-78 (257)
21 smart00303 GPS G-protein-coupl 60.4 3.4 7.4E-05 24.1 0.3 12 25-36 26-37 (49)
22 PF01825 GPS: Latrophilin/CL-1 57.4 3 6.4E-05 23.8 -0.3 20 17-36 10-37 (44)
23 COG2322 Predicted membrane pro 53.2 60 0.0013 24.4 5.9 59 39-103 35-93 (177)
24 PF05297 Herpes_LMP1: Herpesvi 52.1 4.8 0.0001 32.9 0.0 26 55-80 54-79 (381)
25 CHL00106 petL cytochrome b6/f 50.7 36 0.00078 18.3 3.3 27 50-78 3-29 (31)
26 PF00822 PMP22_Claudin: PMP-22 46.5 39 0.00084 23.9 4.1 33 43-75 67-99 (166)
27 PF05115 PetL: Cytochrome B6-F 46.5 47 0.001 17.9 3.7 27 50-78 3-29 (31)
28 PF01102 Glycophorin_A: Glycop 40.4 50 0.0011 23.4 3.7 16 64-80 79-94 (122)
29 PF05297 Herpes_LMP1: Herpesvi 40.2 9.4 0.0002 31.2 0.0 79 55-137 107-187 (381)
30 PF04238 DUF420: Protein of un 38.6 1.3E+02 0.0027 21.5 5.6 30 75-104 24-53 (133)
31 PHA02817 EEV Host range protei 37.8 20 0.00043 28.0 1.5 27 5-33 121-147 (225)
32 PF14293 YWFCY: YWFCY protein 37.2 1E+02 0.0023 19.2 5.0 46 43-88 3-53 (61)
33 PRK13707 conjugal transfer pil 36.1 1.2E+02 0.0026 20.6 5.0 22 61-82 46-67 (101)
34 PHA02817 EEV Host range protei 34.4 26 0.00056 27.4 1.6 19 6-24 61-79 (225)
35 PHA03099 epidermal growth fact 33.7 58 0.0013 23.4 3.2 35 46-80 95-129 (139)
36 PF01484 Col_cuticle_N: Nemato 29.8 89 0.0019 17.8 3.1 32 53-84 3-35 (53)
37 PF10661 EssA: WXG100 protein 27.5 82 0.0018 22.8 3.2 27 51-77 117-143 (145)
38 PHA02680 ORF090 IMV phosphoryl 27.3 1.4E+02 0.0031 20.0 4.0 20 83-102 43-62 (91)
39 PF15179 Myc_target_1: Myc tar 27.0 67 0.0014 24.5 2.7 20 56-75 24-44 (197)
40 PF02038 ATP1G1_PLM_MAT8: ATP1 26.8 69 0.0015 19.1 2.2 29 50-79 12-40 (50)
41 PF01299 Lamp: Lysosome-associ 24.7 44 0.00096 26.8 1.5 21 55-76 277-297 (306)
42 PHA02639 EEV host range protei 24.1 48 0.001 26.8 1.6 19 6-24 121-139 (295)
43 PF15018 InaF-motif: TRP-inter 24.0 1.1E+02 0.0023 17.2 2.5 23 50-72 6-28 (38)
44 PRK11371 hypothetical protein; 23.8 2.4E+02 0.0052 19.6 4.7 13 114-126 44-56 (126)
45 PF04906 Tweety: Tweety; Inte 23.7 3.1E+02 0.0067 23.1 6.4 39 37-76 8-49 (406)
46 PF11286 DUF3087: Protein of u 23.3 3.1E+02 0.0066 20.5 5.6 56 40-97 5-62 (165)
47 PF11085 YqhR: Conserved membr 23.2 3.3E+02 0.0071 20.5 5.8 27 62-88 80-106 (173)
48 PF04834 Adeno_E3_14_5: Early 23.1 96 0.0021 21.1 2.6 33 43-75 16-48 (97)
49 PF02439 Adeno_E3_CR2: Adenovi 22.3 1.6E+02 0.0035 16.5 3.2 22 55-76 10-31 (38)
50 PF15050 SCIMP: SCIMP protein 21.9 1.1E+02 0.0024 21.8 2.8 20 57-76 14-33 (133)
51 TIGR02921 PEP_integral PEP-CTE 20.6 3.9E+02 0.0084 24.6 6.5 37 64-100 90-126 (952)
No 1
>KOG4564|consensus
Probab=99.98 E-value=2.7e-32 Score=228.45 Aligned_cols=134 Identities=38% Similarity=0.812 Sum_probs=115.6
Q ss_pred cCCCCceeeeCCCCCcccC------CCCccccccCCCCccc-C-CcchhhhhHHhhhhhhHhHHHHHHHHHHHHHHhhhc
Q psy8055 6 YLNAENASKWCNANGSWNS------FANYSLCTDIKKTTQD-L-SEPGIEITTMIYSVGYTLSLIALIIAVWIFVYFKDL 77 (139)
Q Consensus 6 ~~~~~~~~r~C~~~G~W~~------~~~yt~C~~~~~~~~~-~-~~~~~~~l~~i~~vG~~lSl~~L~~tii~~~~~r~l 77 (139)
++++++++|.|++||+|+. |+|||+|..+.+.... . .+.....+++++++|+++|+++|++|+++|..||++
T Consensus 96 ~~~~~~v~R~C~~~G~W~~~~~~~~W~nyt~C~~~~~~~~~~~~~~~~~~~~~~lytvGyslSl~sL~vAl~If~~FR~L 175 (473)
T KOG4564|consen 96 YSTSGNVTRNCTSNGTWSERPPSRTWTNYTACGKNEEEEERQLDREYFLELLKILYTVGYSLSLVSLLVALIIFLYFRSL 175 (473)
T ss_pred ccCCCceEeecCCCCccCCCCCcCCCCCchhccCcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3499999999999999973 6999999998655422 1 245566678999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhhcc---------------cCC-chhHHHHHHHHHHHHHHHHHHHHhhcC
Q psy8055 78 RCLRNKIHTNLMCTYILADFMWILTMTVQMSV---------------QSN-FACVILYIFLHYCHLTNFFWMFVEGSR 139 (139)
Q Consensus 78 r~~~~~Ih~nL~~slll~~l~fli~~~~~~~~---------------~~~-~~C~~~a~~lhy~~la~f~Wmlveg~~ 139 (139)
||+|++||+||++|++++.+..++.+.....+ .++ .+|+++.+++|||.+++|+||++||+|
T Consensus 176 ~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ck~~~~~~~Yf~~aNf~WmlvEGlY 253 (473)
T KOG4564|consen 176 HCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGCKLLFVFFQYFVLANFFWMLVEGLY 253 (473)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998754322 022 299999999999999999999999986
No 2
>KOG4193|consensus
Probab=99.90 E-value=6.6e-24 Score=183.44 Aligned_cols=119 Identities=27% Similarity=0.540 Sum_probs=101.9
Q ss_pred CCCCcccC--------CCCccccccCCCCc---------c-cCCcchhhhhHHhhhhhhHhHHHHHHHHHHHHHHhhhcc
Q psy8055 17 NANGSWNS--------FANYSLCTDIKKTT---------Q-DLSEPGIEITTMIYSVGYTLSLIALIIAVWIFVYFKDLR 78 (139)
Q Consensus 17 ~~~G~W~~--------~~~yt~C~~~~~~~---------~-~~~~~~~~~l~~i~~vG~~lSl~~L~~tii~~~~~r~lr 78 (139)
..+|.|++ ..+++.|.|.|..+ . ..++.....++++++|||++|+++|++++++|.++|++|
T Consensus 272 ~~~~~ws~~gc~~~~~~~~~~~c~C~hltsFavlm~~~~~~~~~~~~~~~l~~i~~VG~~iSlvcL~lti~ty~~~~~l~ 351 (610)
T KOG4193|consen 272 SMGGYWSTEGCSLETSNETSTICACNHLTSFAVLMAHSDVAIEDAVLTLLLDILSTVGCIISLVCLLLTIATYLLFRKLQ 351 (610)
T ss_pred CCCCccccCCceeeEeecCceEEEeccchhHHHhccccccccccchhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35778963 45589999986432 1 234666778999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhhcccCCc--hhHHHHHHHHHHHHHHHHHHHHhhcC
Q psy8055 79 CLRNKIHTNLMCTYILADFMWILTMTVQMSVQSNF--ACVILYIFLHYCHLTNFFWMFVEGSR 139 (139)
Q Consensus 79 ~~~~~Ih~nL~~slll~~l~fli~~~~~~~~~~~~--~C~~~a~~lhy~~la~f~Wmlveg~~ 139 (139)
.+|++||+|||+|+++++++||+++ ..+... .|+++|+++|||+||+|+||++||+|
T Consensus 352 ~~~~~i~~~l~~~L~l~~l~fL~~~----~~~~~~~~~C~~~a~llhff~LaaF~Wm~leg~h 410 (610)
T KOG4193|consen 352 NDRTKIHINLCLCLFLAELLFLLGI----DRTSTSVVLCIAAAILLHFFFLAAFFWMLLEGFH 410 (610)
T ss_pred hhcchhHHHHHHHHHHHHHHHhccc----ccccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 333333 69999999999999999999999987
No 3
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=99.76 E-value=8.1e-20 Score=140.71 Aligned_cols=93 Identities=35% Similarity=0.688 Sum_probs=10.2
Q ss_pred hhhHHhhhhhhHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhcccC---CchhHHHHHHHH
Q psy8055 47 EITTMIYSVGYTLSLIALIIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMTVQMSVQS---NFACVILYIFLH 123 (139)
Q Consensus 47 ~~l~~i~~vG~~lSl~~L~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~~~~~~~~~---~~~C~~~a~~lh 123 (139)
++++++++||+++|++++++++++|..+|++|+.|+++|+||++|+++.++.++++.....+... +..|++.|+++|
T Consensus 1 ~~l~~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~~~~~~~~~~~~C~~~a~~~h 80 (242)
T PF00002_consen 1 TALSIISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQTFSPISTTNHCLCRAIAILLH 80 (242)
T ss_dssp -HHHHHHHHHHH--------------------------------------------------------------------
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhccccccccccccchhhhhHhH
Confidence 36899999999999999999999999999999999999999999999999999988743222111 125999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q psy8055 124 YCHLTNFFWMFVEGSR 139 (139)
Q Consensus 124 y~~la~f~Wmlveg~~ 139 (139)
|+.+++|+||++||+|
T Consensus 81 y~~la~f~Wm~~~~~~ 96 (242)
T PF00002_consen 81 YFFLASFFWMLVEAFY 96 (242)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999986
No 4
>KOG4289|consensus
Probab=99.65 E-value=5.1e-16 Score=141.10 Aligned_cols=127 Identities=24% Similarity=0.478 Sum_probs=106.6
Q ss_pred CCCceeeeC----CCCCcccC--------CCCccccccCCC--Cc-----ccCCcchhhhhHHhhhhhhHhHHHHHHHHH
Q psy8055 8 NAENASKWC----NANGSWNS--------FANYSLCTDIKK--TT-----QDLSEPGIEITTMIYSVGYTLSLIALIIAV 68 (139)
Q Consensus 8 ~~~~~~r~C----~~~G~W~~--------~~~yt~C~~~~~--~~-----~~~~~~~~~~l~~i~~vG~~lSl~~L~~ti 68 (139)
+.+.....| .+.|+|.. +.+|.-|+|++- ++ +..+......+.+.+++-.++|+++|++++
T Consensus 2105 ~~~rtkpiCV~wde~tG~WtARgcelv~rN~tHaaCqcnr~gsF~vlmd~s~re~g~~~~l~~~t~a~~gvslaal~lt~ 2184 (2531)
T KOG4289|consen 2105 TEERTKPICVFWDEGTGGWTARGCELVGRNLTHAACQCNRTGSFAVLMDDSRRENGEALPLKMTTYAAVGVSLAALLLTF 2184 (2531)
T ss_pred ccCcccceEEEEcCCCCceeeccceeeccccceeeeeeccceeEEEEEccCcccccceehhhhhhHHHHHHHHHHHHHHH
Confidence 344445556 67889962 567889999863 22 112256677899999999999999999999
Q ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHhhcC
Q psy8055 69 WIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMTVQMSVQSNFACVILYIFLHYCHLTNFFWMFVEGSR 139 (139)
Q Consensus 69 i~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~~~~~~~~~~~~C~~~a~~lhy~~la~f~Wmlveg~~ 139 (139)
++....|.||+....||.||++++.+++++|+.++ . +.+..|.++++++||++++.|.|.++||+|
T Consensus 2185 ~llls~RsLksn~~~I~~~l~~Al~l~~L~Fv~gi----~-~nq~~CtvvailLhf~~~stFaWlfl~gLh 2250 (2531)
T KOG4289|consen 2185 LLLLSLRSLKSNSHGIHFNLAAALGLAQLVFVLGI----N-QNQFYCTVVAILLHFTYLSTFAWLFLEGLH 2250 (2531)
T ss_pred HHHHHHHHHhhcchhhhhHHHHHHhHHHHHhhhhc----c-cCchhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999998 3 344599999999999999999999999987
No 5
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.61 E-value=4.2e-07 Score=73.49 Aligned_cols=96 Identities=20% Similarity=0.329 Sum_probs=77.7
Q ss_pred cchhhhhHHhhhhhhHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhcccCCchhHHHHHHH
Q psy8055 43 EPGIEITTMIYSVGYTLSLIALIIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMTVQMSVQSNFACVILYIFL 122 (139)
Q Consensus 43 ~~~~~~l~~i~~vG~~lSl~~L~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~~~~~~~~~~~~C~~~a~~l 122 (139)
+++.+.+..+..++.++|+++.++.+++|..+|++|+..+++-.-++++-++.++..++.......++++..|.+.|++.
T Consensus 3 ~~~~~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~~~~~~~s~lC~~Qafli 82 (303)
T PF05462_consen 3 KQQIRTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLSPSAGENSFLCQFQAFLI 82 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHhHHH
Confidence 45567888999999999999999999999999999988888888888888887765544332221223344999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q psy8055 123 HYCHLTNFFWMFVEGS 138 (139)
Q Consensus 123 hy~~la~f~Wmlveg~ 138 (139)
|||.++++.|.++-++
T Consensus 83 q~f~~as~lWt~~iA~ 98 (303)
T PF05462_consen 83 QFFMLASFLWTLCIAF 98 (303)
T ss_pred HHhhHHHHHHHHHHHH
Confidence 9999999999998765
No 6
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=97.80 E-value=0.00017 Score=55.06 Aligned_cols=91 Identities=14% Similarity=0.261 Sum_probs=72.7
Q ss_pred hHHhhhhhhHhHHHHHHHHHHHHHHh-hhccccchhhHHHHHHHHHHHHHHHHH-Hhhhhhcc---cCCchhHHHHHHHH
Q psy8055 49 TTMIYSVGYTLSLIALIIAVWIFVYF-KDLRCLRNKIHTNLMCTYILADFMWIL-TMTVQMSV---QSNFACVILYIFLH 123 (139)
Q Consensus 49 l~~i~~vG~~lSl~~L~~tii~~~~~-r~lr~~~~~Ih~nL~~slll~~l~fli-~~~~~~~~---~~~~~C~~~a~~lh 123 (139)
+++.+.++.++|+++.+.++..+... ++.|.-|+.+..||.++=++..+.+++ ......++ .++..|.+.|.+.+
T Consensus 3 ~r~~~i~~s~lSlls~~~~l~~~~~~~~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q 82 (201)
T PF11710_consen 3 LRIGSIVISALSLLSSLAVLYLFFFITYRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQ 82 (201)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHH
Confidence 56788899999999888787777765 455677889999999999999999988 33222211 23459999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q psy8055 124 YCHLTNFFWMFVEGSR 139 (139)
Q Consensus 124 y~~la~f~Wmlveg~~ 139 (139)
....++=.|.+.-|+|
T Consensus 83 ~g~~~sd~~ilaIAih 98 (201)
T PF11710_consen 83 VGDEASDLWILAIAIH 98 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998876
No 7
>PF02793 HRM: Hormone receptor domain; InterPro: IPR001879 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. This domain is found in the extracellular part of some of the secretin-like (family 2) GPCRs including the calcitonin receptor; corticotropin releasing factor receptor 1; diuretic hormone receptor; glucagon-like peptide 1 receptor; and parathyroid hormone peptide receptor.; GO: 0004930 G-protein coupled receptor activity, 0016020 membrane; PDB: 3EHT_A 3EHU_A 2L27_A 3EHS_A 4DLO_B 2QKH_A 3C5T_A 3C59_A 3IOL_A 3N7R_B ....
Probab=97.64 E-value=2e-05 Score=49.71 Aligned_cols=30 Identities=37% Similarity=0.730 Sum_probs=26.4
Q ss_pred cccCCCCceeeeCCCCCcccCC--CCcccccc
Q psy8055 4 FFYLNAENASKWCNANGSWNSF--ANYSLCTD 33 (139)
Q Consensus 4 ~~~~~~~~~~r~C~~~G~W~~~--~~yt~C~~ 33 (139)
..++..++|+|+|.+||+|... +||+.|..
T Consensus 34 ~~~~~~g~a~R~C~~nG~W~~~~~~nys~C~~ 65 (66)
T PF02793_consen 34 FGSDTSGNATRNCTENGTWEEHRPPNYSNCVS 65 (66)
T ss_dssp CTSSTTSEEEEEEETTSSBECSSCEBHTTCSS
T ss_pred cccccceeEEEEcCCCCcCCCcCCCCcccccC
Confidence 4677899999999999999876 89999974
No 8
>smart00008 HormR Domain present in hormone receptors.
Probab=96.99 E-value=0.00073 Score=43.19 Aligned_cols=31 Identities=35% Similarity=0.622 Sum_probs=24.5
Q ss_pred ccCCCCceeeeCCCCCcccCC-CCccccccCC
Q psy8055 5 FYLNAENASKWCNANGSWNSF-ANYSLCTDIK 35 (139)
Q Consensus 5 ~~~~~~~~~r~C~~~G~W~~~-~~yt~C~~~~ 35 (139)
.|+++..++|.|+++|+|+.. +||+.|....
T Consensus 34 g~~~~~~a~R~C~~~G~W~~~~~ny~~C~~~~ 65 (70)
T smart00008 34 GFSYKTGASRNCTENGGWSPPFPNYSNCTSND 65 (70)
T ss_pred CcCCCCCEEEEcCCCCCCccCCCCHhhccCCc
Confidence 344444599999999999876 7999998754
No 9
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=96.90 E-value=0.012 Score=48.23 Aligned_cols=91 Identities=13% Similarity=0.296 Sum_probs=61.3
Q ss_pred hhhhHHhhhhhhHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhhhhcc----------------
Q psy8055 46 IEITTMIYSVGYTLSLIALIIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMTVQMSV---------------- 109 (139)
Q Consensus 46 ~~~l~~i~~vG~~lSl~~L~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~~~~~~~---------------- 109 (139)
.+-.+....+-.+++.++.++|+++|..-++.-.-+.+...-+.+|.++..+.+++......++
T Consensus 8 ~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~ 87 (328)
T PF01534_consen 8 KEFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQD 87 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeec
Confidence 3344666667777888888889999988665212234444445566666677777665431111
Q ss_pred -cCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy8055 110 -QSNFACVILYIFLHYCHLTNFFWMFVE 136 (139)
Q Consensus 110 -~~~~~C~~~a~~lhy~~la~f~Wmlve 136 (139)
.++..|.++.+++.||.+|+..|..+-
T Consensus 88 ~~~~~~C~~~F~l~Yyf~mAa~~WWviL 115 (328)
T PF01534_consen 88 GLENSSCTVVFLLLYYFGMAASLWWVIL 115 (328)
T ss_pred CCCCCchhhHHHHHHHHHhHHHHHHHHH
Confidence 123499999999999999999998764
No 10
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=88.21 E-value=5.4 Score=33.66 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q psy8055 114 ACVILYIFLHYCHLTNFFWMFVEGS 138 (139)
Q Consensus 114 ~C~~~a~~lhy~~la~f~Wmlveg~ 138 (139)
.|...++..|||+.|+|.|.++-++
T Consensus 115 fCv~ss~WIq~fYsAtfwWtfcYAV 139 (405)
T PF02101_consen 115 FCVGSSMWIQLFYSATFWWTFCYAV 139 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998764
No 11
>PF04148 Erv26: Transmembrane adaptor Erv26; InterPro: IPR007277 Erv26 is an integral membrane protein that is packed into COPII vesicles and cycles between the ER and Golgi compartments. It directs pro-alkaline phosphatase into endoplasmic reticulum-derived COPII transport vesicles [].
Probab=74.31 E-value=37 Score=26.32 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=33.5
Q ss_pred hhHHhhhhhhHhHHHHHHHHHHHHHHh-hh---ccccch-hhHHHHHHHHHHHHHHHHHHh
Q psy8055 48 ITTMIYSVGYTLSLIALIIAVWIFVYF-KD---LRCLRN-KIHTNLMCTYILADFMWILTM 103 (139)
Q Consensus 48 ~l~~i~~vG~~lSl~~L~~tii~~~~~-r~---lr~~~~-~Ih~nL~~slll~~l~fli~~ 103 (139)
.|.+++++|..+.++++.+++..=... .+ -++.++ ++...+..+.+..++++++.+
T Consensus 3 ~L~lls~~g~~~~~~f~tlsiAsGLyYlsElVEEht~~akril~~~I~~ii~~~vlL~~~D 63 (211)
T PF04148_consen 3 FLPLLSYLGTVLGFVFLTLSIASGLYYLSELVEEHTVLAKRILKRLIYFIIALHVLLLLFD 63 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467899999999888877777543332 22 233332 455555556666666555443
No 12
>PHA02639 EEV host range protein; Provisional
Probab=74.06 E-value=3.6 Score=33.29 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=18.1
Q ss_pred ccCCCCceeeeCCCCCcccCCCCccccc
Q psy8055 5 FYLNAENASKWCNANGSWNSFANYSLCT 32 (139)
Q Consensus 5 ~~~~~~~~~r~C~~~G~W~~~~~yt~C~ 32 (139)
.|.-.|...++|..+|+|+. .-.+|.
T Consensus 181 GY~L~Gs~~~tC~~nG~Ws~--~~P~C~ 206 (295)
T PHA02639 181 GFDLVGEKYSTCNINATWFP--SIPTCV 206 (295)
T ss_pred CCeEcCCCcEEECCCCeECC--CCCeEe
Confidence 35556778899999999953 234454
No 13
>PF00084 Sushi: Sushi domain (SCR repeat); InterPro: IPR000436 Sushi domains are also known as Complement control protein (CCP) modules, or short consensus repeats (SCR), exist in a wide variety of complement and adhesion proteins. The structure is known for this domain, it is based on a beta-sandwich arrangement; one face made up of three beta-strands hydrogen-bonded to form a triple-stranded region at its centre and the other face formed from two separate beta-strands []. CD21 (also called C3d receptor, CR2, Epstein Barr virus receptor or EBV-R) is the receptor for EBV and for C3d, C3dg and iC3b. Complement components may activate B cells through CD21. CD21 is part of a large signal-transduction complex that also involves CD19, CD81, and Leu13. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Complement decay-accelerating factor (Antigen CD55) belongs to the Cromer blood group system and is associated with Cr(a), Dr(a), Es(a), Tc(a/b/c), Wd(a), WES(a/b), IFC and UMC antigens. Complement receptor type 1 (C3b/C4b receptor) (Antigen CD35) belongs to the Knops blood group system and is associated with Kn(a/b), McC(a), Sl(a) and Yk(a) antigens. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 1HFH_A 1HFI_A 1E5G_A 2UWN_A 2V8E_A 2XWB_H 3HS0_I 2OK5_A 2XWJ_J 3HRZ_D ....
Probab=73.32 E-value=1.1 Score=25.84 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=15.7
Q ss_pred ccCCCCceeeeCCCCCcccC
Q psy8055 5 FYLNAENASKWCNANGSWNS 24 (139)
Q Consensus 5 ~~~~~~~~~r~C~~~G~W~~ 24 (139)
.|...+.....|.++|+|+.
T Consensus 32 Gy~~~g~~~~~C~~~g~W~~ 51 (56)
T PF00084_consen 32 GYELSGSSTITCQSNGQWSP 51 (56)
T ss_dssp TEEEESSSEEEEETTSEESS
T ss_pred CCEecCCCEEEECCCCEECC
Confidence 35566778999999999965
No 14
>PHA02831 EEV host range protein; Provisional
Probab=70.99 E-value=6.9 Score=31.33 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=15.8
Q ss_pred ccCCCCceeeeCCCCCcccC
Q psy8055 5 FYLNAENASKWCNANGSWNS 24 (139)
Q Consensus 5 ~~~~~~~~~r~C~~~G~W~~ 24 (139)
.|.-.|.+.+.|.++|+|+.
T Consensus 171 GY~L~Gss~~tC~~nG~Wsp 190 (268)
T PHA02831 171 GFILLGSSVSTCDINSIWYP 190 (268)
T ss_pred CCEECCCccEEECCCCeECC
Confidence 35556778999999999963
No 15
>smart00032 CCP Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR). The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.
Probab=70.18 E-value=2.5 Score=24.09 Aligned_cols=19 Identities=21% Similarity=0.599 Sum_probs=13.7
Q ss_pred cCCCCceeeeCCCCCcccC
Q psy8055 6 YLNAENASKWCNANGSWNS 24 (139)
Q Consensus 6 ~~~~~~~~r~C~~~G~W~~ 24 (139)
|.-.+.....|.++|.|+.
T Consensus 34 y~l~g~~~~~C~~~g~Ws~ 52 (57)
T smart00032 34 YTLIGSSTITCLEDGTWSP 52 (57)
T ss_pred CEEcCCCeeEECCCCEECC
Confidence 3445557888999999964
No 16
>PHA03234 DNA packaging protein UL33; Provisional
Probab=66.28 E-value=70 Score=25.96 Aligned_cols=88 Identities=10% Similarity=0.088 Sum_probs=46.3
Q ss_pred hHHhhhhhhHhHHHHHHHHHHHHHHhh--hccccchhhHHHHHHHHHHHHHHHH--HHhhhhhcccCCchhHHHHHHHHH
Q psy8055 49 TTMIYSVGYTLSLIALIIAVWIFVYFK--DLRCLRNKIHTNLMCTYILADFMWI--LTMTVQMSVQSNFACVILYIFLHY 124 (139)
Q Consensus 49 l~~i~~vG~~lSl~~L~~tii~~~~~r--~lr~~~~~Ih~nL~~slll~~l~fl--i~~~~~~~~~~~~~C~~~a~~lhy 124 (139)
+..++.+=..+++++=.+++.++...+ +.|+..+....||++|=++..+... +......+.-.+..|++.+.+...
T Consensus 35 ~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~~~~w~fG~~lCk~~~~~~~~ 114 (338)
T PHA03234 35 ESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNREALFNFNQAFCQCVLFIYHA 114 (338)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhHHHHHHHHHHH
Confidence 344555555555555555565555333 2345556777888777544433221 111000011123499999987777
Q ss_pred HHHHHHHHHHHh
Q psy8055 125 CHLTNFFWMFVE 136 (139)
Q Consensus 125 ~~la~f~Wmlve 136 (139)
..-++..-+..-
T Consensus 115 ~~~~Si~~L~~I 126 (338)
T PHA03234 115 SCSYSICMLAII 126 (338)
T ss_pred HHHHHHHHHHHH
Confidence 666665554443
No 17
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=65.62 E-value=81 Score=26.45 Aligned_cols=79 Identities=14% Similarity=0.327 Sum_probs=40.7
Q ss_pred hhHHhhhhhhHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh------hhcccCCchhHHHHHH
Q psy8055 48 ITTMIYSVGYTLSLIALIIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMTV------QMSVQSNFACVILYIF 121 (139)
Q Consensus 48 ~l~~i~~vG~~lSl~~L~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~~~------~~~~~~~~~C~~~a~~ 121 (139)
-+.+++.+...+++++=++.+.+.. .|++|+..+....||+++= ++++...+. ..+.-.+..|+....+
T Consensus 100 ~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisD----Ll~~l~lPf~i~~~~~~W~fg~~~Ck~~~~l 174 (417)
T PHA02638 100 YIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISD----LIFVIDFPFIIYNEFDQWIFGDFMCKVISAS 174 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHH----HHHHHHHHHHHHHHhccccccccchhhHHHH
Confidence 4556666777777766554444432 2555554455666665543 333322211 1111233489998876
Q ss_pred HHHHHHHHHH
Q psy8055 122 LHYCHLTNFF 131 (139)
Q Consensus 122 lhy~~la~f~ 131 (139)
....+.++.+
T Consensus 175 ~~~~~~~Si~ 184 (417)
T PHA02638 175 YYIGFFSNMF 184 (417)
T ss_pred HHHHHHHHHH
Confidence 6655555433
No 18
>PF05760 IER: Immediate early response protein (IER); InterPro: IPR008653 This family consists of several eukaryotic immediate early response (IER) 2 and 5 proteins. The role of IER5 is unclear although it play an important role in mediating the cellular response to mitogenic signals. Again, little is known about the function of IER2 although it is thought to play a role in mediating the cellular responses to a variety of extracellular signals [, ].
Probab=65.19 E-value=6.1 Score=32.17 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHH
Q psy8055 82 NKIHTNLMCTYILADF 97 (139)
Q Consensus 82 ~~Ih~nL~~slll~~l 97 (139)
.++|+||.+++++++.
T Consensus 28 ~kLHrnLlvs~vlrsA 43 (300)
T PF05760_consen 28 IKLHRNLLVSLVLRSA 43 (300)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4899999999999985
No 19
>cd00033 CCP Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system. SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.
Probab=63.83 E-value=3.7 Score=23.51 Aligned_cols=19 Identities=26% Similarity=0.685 Sum_probs=13.7
Q ss_pred cCCCCceeeeCCCCCcccC
Q psy8055 6 YLNAENASKWCNANGSWNS 24 (139)
Q Consensus 6 ~~~~~~~~r~C~~~G~W~~ 24 (139)
|...+.....|.++|+|+.
T Consensus 33 y~~~g~~~~~C~~~g~W~~ 51 (57)
T cd00033 33 YTLVGSSTITCTENGGWSP 51 (57)
T ss_pred CeEeCCCeeEECCCCeECC
Confidence 4445566788888998964
No 20
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=62.84 E-value=55 Score=23.58 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=36.7
Q ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHhhh--hh--cccCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy8055 69 WIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTMTV--QM--SVQSNFACVILYIFLHYCHLTNFFWMFVE 136 (139)
Q Consensus 69 i~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~~~--~~--~~~~~~~C~~~a~~lhy~~la~f~Wmlve 136 (139)
.++..-|++|+..+....||+++=++..+........ .. ...++..|+....+...+..++..-+..-
T Consensus 7 ~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~i 78 (257)
T PF00001_consen 7 LVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAI 78 (257)
T ss_dssp HHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3334435566555667777777665554433322211 11 11122399999988877777776655543
No 21
>smart00303 GPS G-protein-coupled receptor proteolytic site domain. Present in latrophilin/CL-1, sea urchin REJ and polycystin.
Probab=60.41 E-value=3.4 Score=24.15 Aligned_cols=12 Identities=8% Similarity=0.058 Sum_probs=9.8
Q ss_pred CCCccccccCCC
Q psy8055 25 FANYSLCTDIKK 36 (139)
Q Consensus 25 ~~~yt~C~~~~~ 36 (139)
.++++.|+|+|.
T Consensus 26 ~~~~~~C~CnHl 37 (49)
T smart00303 26 NSTHTTCSCNHL 37 (49)
T ss_pred CCCEEEEEEEcc
Confidence 558999999874
No 22
>PF01825 GPS: Latrophilin/CL-1-like GPS domain; InterPro: IPR000203 This domain has been termed the GPS domain (for GPCR proteolytic site), because it contains a cleavage site in O97830 from SWISSPROT latrophilin []. However this region in latrophilin is found in many otherwise unrelated cell surface receptors []. There is no evidence currently that this domain provides a cleavage site in any of the other receptors. However the peptide bond that is cleaved in latrophilin is between Leu and Thr residues that are conserved in some of the other receptors []. GPS domains are about 50 residues long and contain either 2 or 4 cysteine residues that are likely to form disulphide bridges. Based on conservation of these cysteines the following pairing can be predicted. +-----------------+ | | +-----------------+---------------+ | | | | | XXXCXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXCXCXXLTXXXXXXX ^ cleavage site ; GO: 0007218 neuropeptide signaling pathway, 0016020 membrane; PDB: 4DLQ_B 4DLO_B.
Probab=57.41 E-value=3 Score=23.83 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=14.2
Q ss_pred CCCCccc--------CCCCccccccCCC
Q psy8055 17 NANGSWN--------SFANYSLCTDIKK 36 (139)
Q Consensus 17 ~~~G~W~--------~~~~yt~C~~~~~ 36 (139)
.+.|.|+ +.+++++|+|+|.
T Consensus 10 ~~~~~W~~~GC~~~~~~~~~~~C~C~Hl 37 (44)
T PF01825_consen 10 EGTGSWSSDGCQVVESSNSHVTCSCNHL 37 (44)
T ss_dssp TTTEEEE-TTEEEEEEETTEEEEEECC-
T ss_pred CCCCCCCcccccEecccCCCEEEEeeCC
Confidence 4567785 3667899999874
No 23
>COG2322 Predicted membrane protein [Function unknown]
Probab=53.20 E-value=60 Score=24.38 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=39.6
Q ss_pred ccCCcchhhhhHHhhhhhhHhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHh
Q psy8055 39 QDLSEPGIEITTMIYSVGYTLSLIALIIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWILTM 103 (139)
Q Consensus 39 ~~~~~~~~~~l~~i~~vG~~lSl~~L~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fli~~ 103 (139)
++.|+...+.+-.++-+-.++|.++++..+ |-+|+....-|++...+-....+.|++-.
T Consensus 35 ~~~~~~~v~i~p~lnai~~~~s~~~llag~------~~Ikrg~i~~Hk~aMltA~~l~l~FlvlY 93 (177)
T COG2322 35 PQADAFNVEILPMLNAIFNSLSFIFLLAGW------RLIKRGNIEKHKRAMLTAFTLALVFLVLY 93 (177)
T ss_pred CCCCccCchhhhhHHHHHHHHHHHHHHHHH------HHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777788888888887777655 33444455678887777777777776554
No 24
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=52.08 E-value=4.8 Score=32.91 Aligned_cols=26 Identities=27% Similarity=0.628 Sum_probs=0.0
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhcccc
Q psy8055 55 VGYTLSLIALIIAVWIFVYFKDLRCL 80 (139)
Q Consensus 55 vG~~lSl~~L~~tii~~~~~r~lr~~ 80 (139)
|=++..++-.++.+||+++-|++-|-
T Consensus 54 vl~sfAvvliiIIiIImlF~RrLLCP 79 (381)
T PF05297_consen 54 VLYSFAVVLIIIIIIIMLFKRRLLCP 79 (381)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 33444444445555566655666554
No 25
>CHL00106 petL cytochrome b6/f complex subunit VI
Probab=50.71 E-value=36 Score=18.32 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=17.6
Q ss_pred HHhhhhhhHhHHHHHHHHHHHHHHhhhcc
Q psy8055 50 TMIYSVGYTLSLIALIIAVWIFVYFKDLR 78 (139)
Q Consensus 50 ~~i~~vG~~lSl~~L~~tii~~~~~r~lr 78 (139)
.+++|.|..++ ++.+|...|.-+++.|
T Consensus 3 tiisYf~~L~~--a~~~t~~lfigL~kIk 29 (31)
T CHL00106 3 TITSYFGFLLA--ALTITSGLFIGLSKIR 29 (31)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHHhhe
Confidence 56777776654 4555666777777654
No 26
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=46.54 E-value=39 Score=23.87 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=21.3
Q ss_pred cchhhhhHHhhhhhhHhHHHHHHHHHHHHHHhh
Q psy8055 43 EPGIEITTMIYSVGYTLSLIALIIAVWIFVYFK 75 (139)
Q Consensus 43 ~~~~~~l~~i~~vG~~lSl~~L~~tii~~~~~r 75 (139)
++.....+.+..+++.++.++++++++-+...+
T Consensus 67 ~~~~~a~r~l~i~s~il~~l~~~l~~~g~~~~~ 99 (166)
T PF00822_consen 67 PGYLQAARALMILSIILGFLGLILALFGLCCTK 99 (166)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHhcccccc
Confidence 344556677777777777777776665544443
No 27
>PF05115 PetL: Cytochrome B6-F complex subunit VI (PetL); InterPro: IPR007802 This family consists of several Cytochrome B6-F complex subunit VI (PetL) proteins found in a number of plant species. PetL is one of the small subunits which make up the cytochrome b(6)f complex. PetL is not absolutely required for either the accumulation or for the function of cytochrome b6f; in its absence, however, the complex becomes unstable in vivo in aging cells and labile in vitro. It has been suggested that the N terminus of the protein is likely to lie in the thylakoid lumen [].; GO: 0009055 electron carrier activity, 0009512 cytochrome b6f complex; PDB: 2ZT9_E 1Q90_L.
Probab=46.45 E-value=47 Score=17.85 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=17.6
Q ss_pred HHhhhhhhHhHHHHHHHHHHHHHHhhhcc
Q psy8055 50 TMIYSVGYTLSLIALIIAVWIFVYFKDLR 78 (139)
Q Consensus 50 ~~i~~vG~~lSl~~L~~tii~~~~~r~lr 78 (139)
.+++|.|..+. ++.+|...|.-+++.|
T Consensus 3 tiisYf~fL~~--al~~t~~lfiGL~kIk 29 (31)
T PF05115_consen 3 TIISYFGFLLA--ALTLTLVLFIGLSKIK 29 (31)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHHhhc
Confidence 56777776644 5566677777777654
No 28
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.38 E-value=50 Score=23.36 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhcccc
Q psy8055 64 LIIAVWIFVYFKDLRCL 80 (139)
Q Consensus 64 L~~tii~~~~~r~lr~~ 80 (139)
+++.++.|++ ||+|++
T Consensus 79 g~Illi~y~i-rR~~Kk 94 (122)
T PF01102_consen 79 GIILLISYCI-RRLRKK 94 (122)
T ss_dssp HHHHHHHHHH-HHHS--
T ss_pred HHHHHHHHHH-HHHhcc
Confidence 3444555666 444443
No 29
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=40.23 E-value=9.4 Score=31.25 Aligned_cols=79 Identities=16% Similarity=0.407 Sum_probs=0.0
Q ss_pred hhhHhHHHHHHHHHHHHHHhhhccccchh--hHHHHHHHHHHHHHHHHHHhhhhhcccCCchhHHHHHHHHHHHHHHHHH
Q psy8055 55 VGYTLSLIALIIAVWIFVYFKDLRCLRNK--IHTNLMCTYILADFMWILTMTVQMSVQSNFACVILYIFLHYCHLTNFFW 132 (139)
Q Consensus 55 vG~~lSl~~L~~tii~~~~~r~lr~~~~~--Ih~nL~~slll~~l~fli~~~~~~~~~~~~~C~~~a~~lhy~~la~f~W 132 (139)
+|..+=++++++++.+.++..-+|..... -...+|+|++++-++.++.... .....-..+-...-..++|...|
T Consensus 107 ~Gi~~l~l~~lLaL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L----~qaWfT~L~dL~WL~LFlaiLIW 182 (381)
T PF05297_consen 107 VGIVILFLCCLLALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLL----HQAWFTILVDLYWLLLFLAILIW 182 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555554444444443332 2344556666655555544421 11223333334444556677778
Q ss_pred HHHhh
Q psy8055 133 MFVEG 137 (139)
Q Consensus 133 mlveg 137 (139)
|-+..
T Consensus 183 lY~H~ 187 (381)
T PF05297_consen 183 LYVHD 187 (381)
T ss_dssp -----
T ss_pred HHhcC
Confidence 76543
No 30
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=38.58 E-value=1.3e+02 Score=21.50 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=23.1
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy8055 75 KDLRCLRNKIHTNLMCTYILADFMWILTMT 104 (139)
Q Consensus 75 r~lr~~~~~Ih~nL~~slll~~l~fli~~~ 104 (139)
+-.|+.+.+.|.+...+-+.....|++...
T Consensus 24 ~~Ir~~~~~~Hr~~Ml~a~~ls~lFlv~Yl 53 (133)
T PF04238_consen 24 YFIRRGRIKLHRKLMLTAFVLSALFLVSYL 53 (133)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788999998888888888877663
No 31
>PHA02817 EEV Host range protein; Provisional
Probab=37.76 E-value=20 Score=27.99 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=19.0
Q ss_pred ccCCCCceeeeCCCCCcccCCCCcccccc
Q psy8055 5 FYLNAENASKWCNANGSWNSFANYSLCTD 33 (139)
Q Consensus 5 ~~~~~~~~~r~C~~~G~W~~~~~yt~C~~ 33 (139)
.|.-.|.....|.++|+|++ ...+|..
T Consensus 121 Gy~L~G~~~~tC~~~G~WSp--~~P~C~~ 147 (225)
T PHA02817 121 GFVLIGTKYSVCGINSSWIP--KVPICSR 147 (225)
T ss_pred CCEEcCCCceEECCCCeECC--CCCEeec
Confidence 34556777889999999954 3356754
No 32
>PF14293 YWFCY: YWFCY protein
Probab=37.25 E-value=1e+02 Score=19.15 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=30.8
Q ss_pred cchhhhhHHhhhhhhHhHHHHHHHHHHH--HHHhhhcccc---chhhHHHH
Q psy8055 43 EPGIEITTMIYSVGYTLSLIALIIAVWI--FVYFKDLRCL---RNKIHTNL 88 (139)
Q Consensus 43 ~~~~~~l~~i~~vG~~lSl~~L~~tii~--~~~~r~lr~~---~~~Ih~nL 88 (139)
+++...|..+.-..-.+|++.|++-+=. |-.|+...-+ -.+|..|+
T Consensus 3 eddlr~L~KImdf~R~iSI~~l~ih~Y~~CY~af~~wg~t~~v~DrIL~n~ 53 (61)
T PF14293_consen 3 EDDLRALRKIMDFMRAISILFLVIHFYWFCYEAFQEWGLTIGVVDRILLNF 53 (61)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 5677788888889999999888876643 4444444322 23666664
No 33
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=36.14 E-value=1.2e+02 Score=20.58 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhhccccch
Q psy8055 61 LIALIIAVWIFVYFKDLRCLRN 82 (139)
Q Consensus 61 l~~L~~tii~~~~~r~lr~~~~ 82 (139)
++++++++..+...|++|..+.
T Consensus 46 l~g~i~g~~~~~~~r~lK~g~g 67 (101)
T PRK13707 46 LFGIIAAVLVWFGIRKLKKGRG 67 (101)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 6788888888888899887653
No 34
>PHA02817 EEV Host range protein; Provisional
Probab=34.41 E-value=26 Score=27.37 Aligned_cols=19 Identities=26% Similarity=0.690 Sum_probs=15.2
Q ss_pred cCCCCceeeeCCCCCcccC
Q psy8055 6 YLNAENASKWCNANGSWNS 24 (139)
Q Consensus 6 ~~~~~~~~r~C~~~G~W~~ 24 (139)
|.-.|..+..|.++|+|+.
T Consensus 61 Y~L~G~~~i~C~~dG~Ws~ 79 (225)
T PHA02817 61 YTLVGEKNIICEKDGKWNK 79 (225)
T ss_pred EEECCCCeEEECCCCcCCC
Confidence 5556777899999999963
No 35
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=33.68 E-value=58 Score=23.44 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=23.7
Q ss_pred hhhhHHhhhhhhHhHHHHHHHHHHHHHHhhhcccc
Q psy8055 46 IEITTMIYSVGYTLSLIALIIAVWIFVYFKDLRCL 80 (139)
Q Consensus 46 ~~~l~~i~~vG~~lSl~~L~~tii~~~~~r~lr~~ 80 (139)
+..-+++-.-+..+.++.++++...+.+.|+.|++
T Consensus 95 n~~t~Yia~~~il~il~~i~is~~~~~~yr~~r~~ 129 (139)
T PHA03099 95 NTTTSYIPSPGIVLVLVGIIITCCLLSVYRFTRRT 129 (139)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHhhheeeecc
Confidence 44445666666666777778888888887776654
No 36
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=29.76 E-value=89 Score=17.81 Aligned_cols=32 Identities=9% Similarity=0.245 Sum_probs=16.4
Q ss_pred hhhhhHhHHHHHHHHHHHHH-Hhhhccccchhh
Q psy8055 53 YSVGYTLSLIALIIAVWIFV-YFKDLRCLRNKI 84 (139)
Q Consensus 53 ~~vG~~lSl~~L~~tii~~~-~~r~lr~~~~~I 84 (139)
.+++.++|.++++.+++..- .+++++..+..+
T Consensus 3 a~~a~~~s~~ai~~~l~~~p~i~~~i~~~~~~~ 35 (53)
T PF01484_consen 3 AYGAIVVSTVAILSCLITVPSIYNDIQNFQSEL 35 (53)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777766666554432 234444444333
No 37
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=27.45 E-value=82 Score=22.81 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=19.1
Q ss_pred HhhhhhhHhHHHHHHHHHHHHHHhhhc
Q psy8055 51 MIYSVGYTLSLIALIIAVWIFVYFKDL 77 (139)
Q Consensus 51 ~i~~vG~~lSl~~L~~tii~~~~~r~l 77 (139)
+-.++|.++..+-++++..+|...|++
T Consensus 117 ~~~~i~~~i~g~ll~i~~giy~~~r~~ 143 (145)
T PF10661_consen 117 ISPTILLSIGGILLAICGGIYVVLRKV 143 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666666677788999998874
No 38
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=27.27 E-value=1.4e+02 Score=19.97 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy8055 83 KIHTNLMCTYILADFMWILT 102 (139)
Q Consensus 83 ~Ih~nL~~slll~~l~fli~ 102 (139)
+...-|++--++..+..+++
T Consensus 43 ~~wRalSii~FIlG~vl~lG 62 (91)
T PHA02680 43 YVWRALSVTCFIVGAVLLLG 62 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45555555444444444444
No 39
>PF15179 Myc_target_1: Myc target protein 1
Probab=26.96 E-value=67 Score=24.51 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=11.8
Q ss_pred hhHhHH-HHHHHHHHHHHHhh
Q psy8055 56 GYTLSL-IALIIAVWIFVYFK 75 (139)
Q Consensus 56 G~~lSl-~~L~~tii~~~~~r 75 (139)
..++|+ ++|++..++|+++.
T Consensus 24 aF~vSm~iGLviG~li~~Llt 44 (197)
T PF15179_consen 24 AFCVSMAIGLVIGALIWALLT 44 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444554 56666666666663
No 40
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=26.78 E-value=69 Score=19.14 Aligned_cols=29 Identities=14% Similarity=0.352 Sum_probs=13.0
Q ss_pred HHhhhhhhHhHHHHHHHHHHHHHHhhhccc
Q psy8055 50 TMIYSVGYTLSLIALIIAVWIFVYFKDLRC 79 (139)
Q Consensus 50 ~~i~~vG~~lSl~~L~~tii~~~~~r~lr~ 79 (139)
+.+-..|..+..+..++.+++..+ ++.||
T Consensus 12 ~tLrigGLi~A~vlfi~Gi~iils-~kckC 40 (50)
T PF02038_consen 12 ETLRIGGLIFAGVLFILGILIILS-GKCKC 40 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCT-THHHH
T ss_pred hHhhccchHHHHHHHHHHHHHHHc-Ccccc
Confidence 334444555544444444444333 44444
No 41
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=24.73 E-value=44 Score=26.80 Aligned_cols=21 Identities=19% Similarity=0.369 Sum_probs=13.4
Q ss_pred hhhHhHHHHHHHHHHHHHHhhh
Q psy8055 55 VGYTLSLIALIIAVWIFVYFKD 76 (139)
Q Consensus 55 vG~~lSl~~L~~tii~~~~~r~ 76 (139)
||++|..+ +++.++.|++-||
T Consensus 277 VG~~La~l-vlivLiaYli~Rr 297 (306)
T PF01299_consen 277 VGAALAGL-VLIVLIAYLIGRR 297 (306)
T ss_pred HHHHHHHH-HHHHHHhheeEec
Confidence 78877544 3445667777665
No 42
>PHA02639 EEV host range protein; Provisional
Probab=24.15 E-value=48 Score=26.83 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=15.2
Q ss_pred cCCCCceeeeCCCCCcccC
Q psy8055 6 YLNAENASKWCNANGSWNS 24 (139)
Q Consensus 6 ~~~~~~~~r~C~~~G~W~~ 24 (139)
|.-.|...+.|.++|+|+.
T Consensus 121 Y~L~G~~~~~C~~dG~WS~ 139 (295)
T PHA02639 121 YSLVGNEKITCIQDKSWKP 139 (295)
T ss_pred eEECCCCeEEECCCCeECC
Confidence 5556778899999999963
No 43
>PF15018 InaF-motif: TRP-interacting helix
Probab=23.99 E-value=1.1e+02 Score=17.22 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=11.2
Q ss_pred HHhhhhhhHhHHHHHHHHHHHHH
Q psy8055 50 TMIYSVGYTLSLIALIIAVWIFV 72 (139)
Q Consensus 50 ~~i~~vG~~lSl~~L~~tii~~~ 72 (139)
++++.+|+.+|+-...+.+.+|-
T Consensus 6 R~~tV~~Yl~~VSl~Ai~LsiYY 28 (38)
T PF15018_consen 6 RVLTVVAYLFSVSLAAIVLSIYY 28 (38)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHH
Confidence 45555665555444444444443
No 44
>PRK11371 hypothetical protein; Provisional
Probab=23.82 E-value=2.4e+02 Score=19.58 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHH
Q psy8055 114 ACVILYIFLHYCH 126 (139)
Q Consensus 114 ~C~~~a~~lhy~~ 126 (139)
.-....+++||..
T Consensus 44 l~i~~tillhylv 56 (126)
T PRK11371 44 LVIVSTILLHYLV 56 (126)
T ss_pred hhHHHHHHHHHHh
Confidence 5555667777764
No 45
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=23.68 E-value=3.1e+02 Score=23.14 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=21.4
Q ss_pred CcccCCcchhhhhHHhhhh---hhHhHHHHHHHHHHHHHHhhh
Q psy8055 37 TTQDLSEPGIEITTMIYSV---GYTLSLIALIIAVWIFVYFKD 76 (139)
Q Consensus 37 ~~~~~~~~~~~~l~~i~~v---G~~lSl~~L~~tii~~~~~r~ 76 (139)
|.|+ ++++.++|-++..+ +.+++++.|++-++..++-|+
T Consensus 8 F~p~-~~~Y~qsL~~la~v~~~~l~l~Ll~ll~yl~~~CC~r~ 49 (406)
T PF04906_consen 8 FNPQ-DEEYQQSLLILASVAAACLALSLLFLLIYLICRCCCRR 49 (406)
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4444 35666676555554 555555555555555555454
No 46
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=23.34 E-value=3.1e+02 Score=20.48 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=30.3
Q ss_pred cCCcchhhhhHHhhhhhhHhHHHHHHHHHH--HHHHhhhccccchhhHHHHHHHHHHHHH
Q psy8055 40 DLSEPGIEITTMIYSVGYTLSLIALIIAVW--IFVYFKDLRCLRNKIHTNLMCTYILADF 97 (139)
Q Consensus 40 ~~~~~~~~~l~~i~~vG~~lSl~~L~~tii--~~~~~r~lr~~~~~Ih~nL~~slll~~l 97 (139)
+++++.++.-.-+.++++..+++.+.+++- .-..|.. -...-.|.||.--++-.-+
T Consensus 5 ~idk~~YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~--~~~~nf~~NllGVil~~~~ 62 (165)
T PF11286_consen 5 EIDKERYRKHLNRVIVACVASLAILSLAFSQLLIALFGG--ESGGNFHWNLLGVILGLLL 62 (165)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCceeeeHHHHHHHHHH
Confidence 345555555556666777777655544443 3333331 1234688888766544443
No 47
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=23.24 E-value=3.3e+02 Score=20.48 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhhccccchhhHHHH
Q psy8055 62 IALIIAVWIFVYFKDLRCLRNKIHTNL 88 (139)
Q Consensus 62 ~~L~~tii~~~~~r~lr~~~~~Ih~nL 88 (139)
++.+.+++-+..+||+|.--.-+...+
T Consensus 80 ~Si~aAllY~~~l~k~~g~W~Gi~YG~ 106 (173)
T PF11085_consen 80 FSIVAALLYYALLKKFKGPWPGILYGL 106 (173)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 556777888888899988766554443
No 48
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=23.10 E-value=96 Score=21.10 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=23.4
Q ss_pred cchhhhhHHhhhhhhHhHHHHHHHHHHHHHHhh
Q psy8055 43 EPGIEITTMIYSVGYTLSLIALIIAVWIFVYFK 75 (139)
Q Consensus 43 ~~~~~~l~~i~~vG~~lSl~~L~~tii~~~~~r 75 (139)
|+.+..-..++.+|.++-..+.++++.+|-.|+
T Consensus 16 ~~~d~~~~Wl~~i~~~~v~~~t~~~l~iYp~f~ 48 (97)
T PF04834_consen 16 KKSDMPNYWLYAIGIVLVFCSTFFSLAIYPCFD 48 (97)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 333444467888888777778888888887764
No 49
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=22.33 E-value=1.6e+02 Score=16.55 Aligned_cols=22 Identities=14% Similarity=0.369 Sum_probs=13.9
Q ss_pred hhhHhHHHHHHHHHHHHHHhhh
Q psy8055 55 VGYTLSLIALIIAVWIFVYFKD 76 (139)
Q Consensus 55 vG~~lSl~~L~~tii~~~~~r~ 76 (139)
+|..+-++-++++++.|.+.+|
T Consensus 10 v~V~vg~~iiii~~~~YaCcyk 31 (38)
T PF02439_consen 10 VAVVVGMAIIIICMFYYACCYK 31 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4555555666777777777644
No 50
>PF15050 SCIMP: SCIMP protein
Probab=21.87 E-value=1.1e+02 Score=21.81 Aligned_cols=20 Identities=5% Similarity=0.341 Sum_probs=15.0
Q ss_pred hHhHHHHHHHHHHHHHHhhh
Q psy8055 57 YTLSLIALIIAVWIFVYFKD 76 (139)
Q Consensus 57 ~~lSl~~L~~tii~~~~~r~ 76 (139)
.++=++++.+.+|.|+..|+
T Consensus 14 VaII~vS~~lglIlyCvcR~ 33 (133)
T PF15050_consen 14 VAIILVSVVLGLILYCVCRW 33 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556778888999988875
No 51
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=20.64 E-value=3.9e+02 Score=24.60 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHH
Q psy8055 64 LIIAVWIFVYFKDLRCLRNKIHTNLMCTYILADFMWI 100 (139)
Q Consensus 64 L~~tii~~~~~r~lr~~~~~Ih~nL~~slll~~l~fl 100 (139)
.++++......|.+.-..+.|.+|+.+++.-......
T Consensus 90 ~~i~l~~lflirel~p~~s~ili~~~i~i~a~~~~l~ 126 (952)
T TIGR02921 90 FFICLLRLFLIRELNPASSHILINIGIAIAAFAACLF 126 (952)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHh
Confidence 3445555556678777778888888888754443333
Done!